Experiment set3IT082 for Shewanella loihica PV-4

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LB with Ceftazidime hydrate 5 mg/ml

Group: stress
Media: LB + Ceftazidime hydrate (5 mg/ml)
Culturing: PV4_ML1, 48 well microplate; Tecan Infinite F200, Aerobic, at 25 (C), shaken=orbital
By: Adam on 2/20/2014
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 818 C3,C4

Specific Phenotypes

For 4 genes in this experiment

For stress Ceftazidime hydrate in Shewanella loihica PV-4

For stress Ceftazidime hydrate across organisms

SEED Subsystems

Subsystem #Specific
Biotin biosynthesis 1
Multidrug Resistance Efflux Pumps 1
n-Phenylalkanoic acid degradation 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
long-chain fatty acid activation 1 1 1
γ-linolenate biosynthesis II (animals) 2 1 1
linoleate biosynthesis II (animals) 2 1 1
3-methyl-branched fatty acid α-oxidation 6 3 2
alkane biosynthesis II 3 1 1
oleate biosynthesis I (plants) 3 1 1
phytol degradation 4 3 1
phosphatidylcholine acyl editing 4 3 1
long chain fatty acid ester synthesis (engineered) 4 2 1
wax esters biosynthesis II 4 1 1
sporopollenin precursors biosynthesis 18 5 4
sphingosine and sphingosine-1-phosphate metabolism 10 4 2
octane oxidation 5 2 1
fatty acid salvage 6 5 1
stearate biosynthesis II (bacteria and plants) 6 5 1
stearate biosynthesis IV 6 4 1
6-gingerol analog biosynthesis (engineered) 6 2 1
stearate biosynthesis I (animals) 6 1 1
ceramide degradation by α-oxidation 7 2 1
capsaicin biosynthesis 7 1 1
arachidonate biosynthesis III (6-desaturase, mammals) 7 1 1
icosapentaenoate biosynthesis III (8-desaturase, mammals) 7 1 1
icosapentaenoate biosynthesis II (6-desaturase, mammals) 7 1 1
2-deoxy-D-ribose degradation II 8 3 1
ceramide and sphingolipid recycling and degradation (yeast) 16 4 2
suberin monomers biosynthesis 20 3 2
superpathway of fatty acid biosynthesis II (plant) 43 37 4
palmitate biosynthesis II (type II fatty acid synthase) 31 29 2
cutin biosynthesis 16 2 1
superpathway of fatty acids biosynthesis (E. coli) 53 50 2
palmitate biosynthesis III 29 21 1
oleate β-oxidation 35 33 1