Experiment set3IT082 for Dyella japonica UNC79MFTsu3.2

Compare to:

L-Arginine nitrogen source

200 most important genes:

  gene name fitness t score description  
ABZR86_RS08250 -6.6 -4.6 phosphate signaling complex protein PhoU compare
ABZR86_RS14100 -5.0 -11.1 DNA adenine methylase compare
ABZR86_RS12005 -4.7 -3.1 ribose-5-phosphate isomerase RpiA compare
ABZR86_RS12885 -4.6 -3.1 magnesium-translocating P-type ATPase compare
ABZR86_RS09885 -4.3 -3.0 trypsin-like peptidase domain-containing protein compare
ABZR86_RS06720 -4.3 -5.2 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABZR86_RS12065 -3.8 -7.3 indole-3-glycerol phosphate synthase TrpC compare
ABZR86_RS15945 -3.6 -6.3 dihydroxy-acid dehydratase compare
ABZR86_RS10425 -3.6 -3.7 pyrroline-5-carboxylate reductase compare
ABZR86_RS14700 -3.5 -7.4 glucose-6-phosphate dehydrogenase compare
ABZR86_RS10215 -3.5 -6.4 inositol monophosphatase family protein compare
ABZR86_RS09635 -3.5 -4.2 phosphoglycerate dehydrogenase compare
ABZR86_RS10715 -3.4 -12.9 serine hydroxymethyltransferase compare
ABZR86_RS06705 -3.4 -5.4 imidazole glycerol phosphate synthase subunit HisF compare
ABZR86_RS08010 -3.4 -5.3 phosphoribosylanthranilate isomerase compare
ABZR86_RS08000 -3.3 -14.7 tryptophan synthase subunit beta compare
ABZR86_RS10475 -3.3 -5.2 shikimate kinase compare
ABZR86_RS19025 -3.3 -4.3 homoserine O-succinyltransferase compare
ABZR86_RS06725 -3.2 -8.7 histidinol-phosphate transaminase compare
ABZR86_RS15940 -3.2 -9.9 ketol-acid reductoisomerase compare
ABZR86_RS18655 -3.2 -9.9 transketolase compare
ABZR86_RS11570 -3.2 -8.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR86_RS06710 -3.1 -5.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABZR86_RS02220 -3.0 -15.1 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR86_RS06715 -3.0 -7.7 imidazole glycerol phosphate synthase subunit HisH compare
ABZR86_RS12435 -3.0 -11.6 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABZR86_RS15515 -3.0 -7.6 nitrogen regulation protein NR(I) compare
ABZR86_RS02225 -2.9 -4.9 prephenate dehydratase compare
ABZR86_RS14985 -2.9 -9.2 shikimate dehydrogenase compare
ABZR86_RS12070 -2.9 -7.6 anthranilate phosphoribosyltransferase compare
ABZR86_RS19725 -2.9 -13.7 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABZR86_RS15975 -2.8 -11.9 threonine synthase (EC 4.2.3.1) (from data) compare
ABZR86_RS02815 -2.8 -14.3 asparagine synthase B compare
ABZR86_RS02230 -2.8 -4.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR86_RS06700 -2.7 -4.7 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABZR86_RS21575 -2.7 -7.8 [protein-PII] uridylyltransferase compare
ABZR86_RS17085 -2.6 -7.4 type II 3-dehydroquinate dehydratase compare
ABZR86_RS08040 -2.6 -8.3 chorismate synthase compare
ABZR86_RS06270 -2.6 -4.7 glycosyltransferase family 9 protein compare
ABZR86_RS06730 -2.6 -7.1 histidinol dehydrogenase compare
ABZR86_RS15460 -2.6 -2.2 type I glutamate--ammonia ligase compare
ABZR86_RS08340 -2.6 -3.6 adenylosuccinate synthase compare
ABZR86_RS15315 -2.5 -10.6 phenylalanine 4-monooxygenase compare
ABZR86_RS19800 -2.5 -9.0 RNase adapter RapZ compare
ABZR86_RS05550 -2.5 -4.0 lipopolysaccharide assembly protein LapB compare
ABZR86_RS07180 -2.5 -6.5 RNA polymerase sigma factor RpoE compare
ABZR86_RS19865 -2.5 -4.3 phosphoribosylformylglycinamidine cyclo-ligase compare
ABZR86_RS15965 -2.5 -8.1 branched-chain amino acid transaminase compare
ABZR86_RS18410 -2.5 -7.6 Arginase (EC 3.5.3.1) (from data) conserved
ABZR86_RS05885 -2.5 -9.1 LysR substrate-binding domain-containing protein compare
ABZR86_RS15960 -2.5 -8.6 3-isopropylmalate dehydratase large subunit compare
ABZR86_RS05875 -2.5 -5.4 cysteine synthase A compare
ABZR86_RS09845 -2.5 -12.3 DUF1631 domain-containing protein compare
ABZR86_RS14690 -2.4 -5.8 phosphogluconate dehydratase compare
ABZR86_RS06735 -2.4 -6.4 ATP phosphoribosyltransferase compare
ABZR86_RS15970 -2.4 -7.5 2-isopropylmalate synthase compare
ABZR86_RS15935 -2.4 -12.6 biosynthetic-type acetolactate synthase large subunit compare
ABZR86_RS13850 -2.4 -5.9 phosphoribosylamine--glycine ligase compare
ABZR86_RS12215 -2.3 -3.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABZR86_RS17180 -2.3 -8.1 glycosyltransferase compare
ABZR86_RS15950 -2.3 -5.3 3-isopropylmalate dehydrogenase compare
ABZR86_RS19560 -2.3 -5.6 aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) (from data) compare
ABZR86_RS15020 -2.3 -2.4 DUF484 family protein compare
ABZR86_RS05895 -2.2 -9.2 phosphoadenylyl-sulfate reductase compare
ABZR86_RS09605 -2.2 -7.9 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABZR86_RS15980 -2.2 -4.9 homoserine kinase (EC 2.7.1.39) (from data) compare
ABZR86_RS15955 -2.2 -6.2 3-isopropylmalate dehydratase small subunit compare
ABZR86_RS12780 -2.1 -5.6 pteridine reductase compare
ABZR86_RS13920 -2.1 -11.0 CDP-glycerol glycerophosphotransferase family protein compare
ABZR86_RS06590 -2.1 -3.0 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABZR86_RS10480 -2.1 -3.6 3-dehydroquinate synthase compare
ABZR86_RS15640 -2.0 -2.2 orotate phosphoribosyltransferase compare
ABZR86_RS10840 -2.0 -2.2 Holliday junction branch migration protein RuvA compare
ABZR86_RS19030 -2.0 -5.2 cystathionine gamma-synthase compare
ABZR86_RS18615 -2.0 -2.8 type I glyceraldehyde-3-phosphate dehydrogenase compare
ABZR86_RS06775 -2.0 -12.2 amidophosphoribosyltransferase compare
ABZR86_RS12180 -2.0 -11.3 anthranilate synthase component I compare
ABZR86_RS06740 -1.9 -1.5 YerC/YecD family TrpR-related protein compare
ABZR86_RS05890 -1.9 -8.9 bifunctional sulfate adenylyltransferase/adenylylsulfate kinase compare
ABZR86_RS20775 -1.9 -4.7 TetR/AcrR family transcriptional regulator compare
ABZR86_RS02890 -1.9 -7.5 sulfate ABC transporter permease subunit CysW compare
ABZR86_RS19860 -1.9 -8.8 phosphoribosylglycinamide formyltransferase compare
ABZR86_RS06275 -1.9 -4.5 DUF6165 family protein compare
ABZR86_RS07660 -1.8 -4.4 exodeoxyribonuclease V subunit gamma compare
ABZR86_RS05900 -1.8 -7.3 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
ABZR86_RS00890 -1.8 -1.7 enoyl-CoA hydratase/isomerase family protein compare
ABZR86_RS06260 -1.8 -3.8 MBL fold metallo-hydrolase compare
ABZR86_RS19815 -1.7 -9.7 RNA polymerase factor sigma-54 compare
ABZR86_RS18675 -1.7 -4.1 phosphoglycerate kinase compare
ABZR86_RS13900 -1.7 -3.5 glycosyltransferase compare
ABZR86_RS05905 -1.7 -5.6 assimilatory sulfite reductase (NADPH) flavoprotein subunit compare
ABZR86_RS10830 -1.7 -1.6 Holliday junction branch migration DNA helicase RuvB compare
ABZR86_RS15810 -1.7 -1.9 hypothetical protein compare
ABZR86_RS02885 -1.6 -8.5 sulfate ABC transporter permease subunit CysT compare
ABZR86_RS13915 -1.6 -8.9 glycosyltransferase family 2 protein compare
ABZR86_RS07995 -1.6 -4.8 tryptophan synthase subunit alpha compare
ABZR86_RS02305 -1.5 -1.1 hypothetical protein compare
ABZR86_RS13865 -1.5 -1.2 DNA topoisomerase I compare
ABZR86_RS13905 -1.5 -8.7 glycosyltransferase family 1 protein compare
ABZR86_RS07585 -1.5 -7.8 homocysteine S-methyltransferase family protein compare
ABZR86_RS15985 -1.4 -5.1 homoserine dehydrogenase compare
ABZR86_RS06580 -1.4 -3.3 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR86_RS01885 -1.4 -1.2 DUF5668 domain-containing protein compare
ABZR86_RS05545 -1.4 -5.8 glycosyltransferase family 4 protein compare
ABZR86_RS13880 -1.4 -1.6 peptide deformylase compare
ABZR86_RS19225 -1.4 -2.8 site-specific tyrosine recombinase XerD compare
ABZR86_RS07665 -1.4 -2.8 exodeoxyribonuclease V subunit beta compare
ABZR86_RS06000 -1.4 -5.5 poly(R)-hydroxyalkanoic acid synthase subunit PhaE compare
ABZR86_RS18715 -1.4 -6.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
ABZR86_RS13910 -1.4 -9.1 glycosyltransferase compare
ABZR86_RS18355 -1.3 -1.6 PepSY domain-containing protein compare
ABZR86_RS02880 -1.3 -6.8 sulfate ABC transporter substrate-binding protein compare
ABZR86_RS20980 -1.3 -1.9 hypothetical protein compare
ABZR86_RS08890 -1.3 -1.1 hypothetical protein compare
ABZR86_RS21435 -1.3 -5.5 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABZR86_RS12280 -1.3 -1.3 dihydrolipoyl dehydrogenase compare
ABZR86_RS05910 -1.2 -3.6 cupin domain-containing protein compare
ABZR86_RS19235 -1.2 -1.9 phosphoribosylformylglycinamidine synthase compare
ABZR86_RS02255 -1.2 -2.3 tRNA-Gly compare
ABZR86_RS05540 -1.2 -6.5 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABZR86_RS18450 -1.2 -2.5 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha compare
ABZR86_RS07885 -1.2 -4.6 cation diffusion facilitator family transporter compare
ABZR86_RS00310 -1.2 -2.7 AraC family transcriptional regulator compare
ABZR86_RS14870 -1.1 -1.0 AAA family ATPase compare
ABZR86_RS13055 -1.1 -4.9 glucokinase compare
ABZR86_RS09075 -1.1 -1.1 NrsF family protein compare
ABZR86_RS11735 -1.1 -1.1 large-conductance mechanosensitive channel protein MscL compare
ABZR86_RS09660 -1.1 -3.5 MerR family transcriptional regulator compare
ABZR86_RS21020 -1.1 -5.8 ATP-binding protein compare
ABZR86_RS18775 -1.1 -1.5 nucleotidyltransferase family protein compare
ABZR86_RS12605 -1.1 -1.5 thioredoxin TrxA compare
ABZR86_RS08905 -1.1 -5.8 carbonate dehydratase compare
ABZR86_RS02545 -1.1 -2.3 Ref family recombination enhancement nuclease compare
ABZR86_RS05995 -1.1 -7.6 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
ABZR86_RS01755 -1.1 -5.3 helix-turn-helix domain-containing protein compare
ABZR86_RS08480 -1.1 -3.0 methylisocitrate lyase compare
ABZR86_RS07590 -1.0 -8.0 methionine synthase compare
ABZR86_RS05820 -1.0 -2.6 GntR family transcriptional regulator compare
ABZR86_RS12045 -1.0 -6.7 cAMP-activated global transcriptional regulator CRP compare
ABZR86_RS17880 -1.0 -1.6 hypothetical protein compare
ABZR86_RS15305 -1.0 -3.5 MbcA/ParS/Xre antitoxin family protein compare
ABZR86_RS05610 -1.0 -4.4 2OG-Fe(II) oxygenase compare
ABZR86_RS11450 -1.0 -1.8 DUF4189 domain-containing protein compare
ABZR86_RS00830 -1.0 -6.0 glucose-6-phosphate isomerase compare
ABZR86_RS11555 -0.9 -5.7 phosphoenolpyruvate carboxylase compare
ABZR86_RS02895 -0.9 -3.7 ABC transporter ATP-binding protein compare
ABZR86_RS12835 -0.9 -3.3 DedA family protein compare
ABZR86_RS03785 -0.9 -1.1 malonate decarboxylase holo-ACP synthase compare
ABZR86_RS08415 -0.9 -1.8 OmpA family protein compare
ABZR86_RS12790 -0.9 -1.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
ABZR86_RS15025 -0.9 -1.7 tyrosine recombinase XerC compare
ABZR86_RS05010 -0.9 -1.6 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR86_RS12940 -0.9 -6.6 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA compare
ABZR86_RS09980 -0.9 -6.1 NAD-dependent epimerase/dehydratase family protein compare
ABZR86_RS02400 -0.9 -1.0 hypothetical protein compare
ABZR86_RS16235 -0.8 -1.6 hypothetical protein compare
ABZR86_RS22115 -0.8 -1.7 hypothetical protein compare
ABZR86_RS15885 -0.8 -1.5 3-oxoacyl-ACP reductase family protein compare
ABZR86_RS02200 -0.8 -6.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR86_RS00660 -0.8 -2.7 recombinase RecA compare
ABZR86_RS09995 -0.8 -4.3 CmcI family methyltransferase compare
ABZR86_RS13495 -0.8 -2.2 YifB family Mg chelatase-like AAA ATPase compare
ABZR86_RS12200 -0.8 -2.6 ribulose-phosphate 3-epimerase compare
ABZR86_RS00150 -0.8 -1.2 isochorismatase family protein compare
ABZR86_RS10355 -0.8 -0.8 chemotaxis protein CheW compare
ABZR86_RS18365 -0.8 -6.1 ATP-binding protein compare
ABZR86_RS06670 -0.8 -5.3 amino acid permease compare
ABZR86_RS00645 -0.8 -4.4 FecR domain-containing protein compare
ABZR86_RS10015 -0.8 -2.6 dTDP-4-dehydrorhamnose 3,5-epimerase family protein compare
ABZR86_RS11845 -0.8 -5.2 RidA family protein compare
ABZR86_RS10010 -0.8 -5.5 class I SAM-dependent methyltransferase compare
ABZR86_RS20860 -0.8 -1.5 transcriptional regulator GcvA compare
ABZR86_RS18735 -0.8 -3.3 dTDP-glucose 4,6-dehydratase compare
ABZR86_RS18730 -0.8 -2.9 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR86_RS09295 -0.8 -1.2 nucleoside-diphosphate sugar epimerase compare
ABZR86_RS07950 -0.8 -1.4 hypothetical protein compare
ABZR86_RS10005 -0.7 -2.1 acyltransferase compare
ABZR86_RS15510 -0.7 -2.2 ATP-binding protein compare
ABZR86_RS13895 -0.7 -5.4 glycosyltransferase family 39 protein compare
ABZR86_RS18150 -0.7 -4.8 universal stress protein compare
ABZR86_RS01150 -0.7 -0.9 hypothetical protein compare
ABZR86_RS05860 -0.7 -1.1 adenylosuccinate lyase compare
ABZR86_RS21345 -0.7 -5.1 GNAT family N-acetyltransferase compare
ABZR86_RS02900 -0.7 -4.6 MASE1 domain-containing protein compare
ABZR86_RS17990 -0.7 -1.2 glutathione S-transferase family protein compare
ABZR86_RS08355 -0.7 -2.4 FtsH protease activity modulator HflK compare
ABZR86_RS07320 -0.7 -5.6 endopeptidase La compare
ABZR86_RS06630 -0.7 -1.1 phosphopyruvate hydratase compare
ABZR86_RS06690 -0.7 -2.4 acireductone synthase compare
ABZR86_RS19930 -0.7 -1.6 YbaL family putative K(+) efflux transporter compare
ABZR86_RS09985 -0.7 -4.7 glycosyltransferase compare
ABZR86_RS08435 -0.7 -2.5 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR86_RS04920 -0.7 -1.0 pentapeptide repeat-containing protein compare
ABZR86_RS02215 -0.7 -1.8 FHA domain-containing protein compare
ABZR86_RS20045 -0.7 -0.8 flagella synthesis protein FlgN compare
ABZR86_RS07340 -0.7 -1.2 tRNA-Leu compare
ABZR86_RS18360 -0.7 -4.7 response regulator transcription factor compare
ABZR86_RS12350 -0.7 -0.9 glycine zipper 2TM domain-containing protein compare
ABZR86_RS22250 -0.7 -2.9 EscU/YscU/HrcU family type III secretion system export apparatus switch protein compare
ABZR86_RS00685 -0.7 -1.1 carbon storage regulator CsrA compare


Specific Phenotypes

For 1 genes in this experiment

For nitrogen source L-Arginine in Dyella japonica UNC79MFTsu3.2

For nitrogen source L-Arginine across organisms