Experiment set3IT081 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with L-Lysine 25 mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -8.1 -5.6 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_4353 -7.7 -7.5 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_3617 -5.7 -6.8 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_5430 -5.6 -13.0 Transglycosylase, Slt family compare
Pf6N2E2_3285 -5.3 -5.4 Rod shape-determining protein MreD compare
Pf6N2E2_5001 -5.2 -3.6 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_4153 -5.0 -3.5 Sensory box histidine kinase compare
Pf6N2E2_5006 -4.9 -10.9 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_5544 -4.6 -10.9 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_5178 -4.5 -3.1 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_2753 -4.4 -4.9 HtrA protease/chaperone protein compare
Pf6N2E2_2320 -4.3 -5.3 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_3351 -4.3 -7.7 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_4162 -4.1 -4.0 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_5733 -4.0 -6.2 NLP/P60 family protein compare
Pf6N2E2_3661 -4.0 -7.6 hypothetical protein compare
Pf6N2E2_4611 -3.9 -6.6 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_3663 -3.8 -9.9 Glycosyl transferase compare
Pf6N2E2_3264 -3.5 -3.2 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_5337 -3.4 -6.6 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_5342 -3.2 -4.2 21 kDa hemolysin precursor compare
Pf6N2E2_4762 -3.2 -2.6 Biotin synthesis protein BioH compare
Pf6N2E2_2825 -3.2 -6.1 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_5882 -3.2 -7.9 Putative membrane protein compare
Pf6N2E2_4759 -3.2 -13.6 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_4585 -3.1 -11.4 Cell division protein FtsX compare
Pf6N2E2_2318 -3.1 -8.3 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_5328 -3.0 -5.9 FIG00958649: hypothetical protein compare
Pf6N2E2_5245 -2.9 -7.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4763 -2.8 -10.5 Biotin synthesis protein BioC compare
Pf6N2E2_623 -2.8 -2.2 FIG00954674: hypothetical protein compare
Pf6N2E2_4761 -2.8 -10.4 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_4584 -2.8 -3.6 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_5339 -2.7 -7.3 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_3612 -2.7 -3.4 HflK protein compare
Pf6N2E2_2218 -2.6 -7.0 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_4352 -2.6 -2.8 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_4159 -2.6 -4.3 Cytochrome c4 compare
Pf6N2E2_5316 -2.5 -3.8 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_4764 -2.5 -7.8 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_3611 -2.5 -1.7 HflC protein compare
Pf6N2E2_5338 -2.4 -8.2 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_3659 -2.4 -5.4 Protein fixF compare
Pf6N2E2_4631 -2.3 -8.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_2510 -2.3 -6.1 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_2513 -2.2 -5.8 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_5929 -2.2 -5.8 FIG00954461: hypothetical protein compare
Pf6N2E2_4369 -2.2 -3.9 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3658 -2.1 -8.6 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_2506 -2.1 -12.0 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_3517 -2.1 -5.0 tRNA dihydrouridine synthase B (EC 1.-.-.-) compare
Pf6N2E2_3301 -2.1 -10.4 ABC transporter, ATP-binding protein compare
Pf6N2E2_3664 -2.0 -6.4 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_586 -2.0 -6.9 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) compare
Pf6N2E2_5727 -2.0 -4.3 FIG00955360: hypothetical protein compare
Pf6N2E2_2317 -2.0 -4.3 Putative analog of CcoH, COG3198 compare
Pf6N2E2_4416 -1.9 -2.2 Tyrosine recombinase XerC compare
Pf6N2E2_625 -1.9 -4.6 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_2824 -1.9 -7.7 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_4187 -1.9 -4.1 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2310 -1.9 -9.2 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_3786 -1.8 -4.4 Twin-arginine translocation protein TatC compare
Pf6N2E2_4993 -1.8 -1.8 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_5705 -1.8 -2.2 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_5633 -1.7 -11.2 Aromatic amino acid transport protein AroP compare
Pf6N2E2_3460 -1.7 -2.3 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_2823 -1.7 -3.8 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_2219 -1.7 -2.2 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_3834 -1.6 -3.8 Lipoprotein NlpD compare
Pf6N2E2_2940 -1.6 -4.1 OmpA family protein compare
Pf6N2E2_145 -1.6 -8.6 putative exported protein compare
Pf6N2E2_3607 -1.6 -6.0 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_2311 -1.6 -7.9 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_2675 -1.6 -1.7 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_5536 -1.6 -1.8 Holliday junction DNA helicase RuvA compare
Pf6N2E2_622 -1.6 -2.7 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_624 -1.5 -6.2 hypothetical protein PA3071 compare
Pf6N2E2_620 -1.5 -7.6 BatD compare
Pf6N2E2_3475 -1.5 -2.4 hypothetical protein compare
Pf6N2E2_2325 -1.5 -6.3 Recombination protein RecR compare
Pf6N2E2_2527 -1.5 -5.1 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_122 -1.5 -3.0 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_621 -1.5 -6.7 TPR domain protein in aerotolerance operon compare
Pf6N2E2_2869 -1.4 -1.5 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_144 -1.4 -11.3 Uncharacterized protein YtfM precursor compare
Pf6N2E2_3461 -1.4 -1.7 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_5150 -1.4 -5.7 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_4273 -1.4 -5.2 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_3655 -1.4 -8.3 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_4204 -1.3 -2.0 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_2746 -1.3 -4.9 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor compare
Pf6N2E2_773 -1.3 -6.6 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
Pf6N2E2_4638 -1.3 -2.7 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_3656 -1.3 -4.0 Probable transcription regulator Mig-14 compare
Pf6N2E2_4987 -1.2 -1.5 MaoC-like domain protein compare
Pf6N2E2_5594 -1.2 -5.8 Endonuclease III (EC 4.2.99.18) compare
Pf6N2E2_2499 -1.2 -3.0 Competence protein ComEA helix-hairpin-helix region precursor compare
Pf6N2E2_5128 -1.2 -3.0 COG1496: Uncharacterized conserved protein compare
Pf6N2E2_447 -1.2 -3.0 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Pf6N2E2_5761 -1.2 -2.7 Transcriptional regulator, TetR family compare
Pf6N2E2_4477 -1.2 -3.6 Z-ring-associated protein ZapA compare
Pf6N2E2_5794 -1.2 -2.0 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_2752 -1.2 -5.2 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_2508 -1.2 -3.9 hypothetical protein compare
Pf6N2E2_5267 -1.1 -5.7 Sulfate transporter, CysZ-type compare
Pf6N2E2_440 -1.1 -2.8 FIG00954920: hypothetical protein compare
Pf6N2E2_178 -1.1 -1.3 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_5160 -1.1 -2.0 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_5428 -1.1 -4.6 DNA recombination and repair protein RecO compare
Pf6N2E2_2503 -1.1 -2.2 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_2081 -1.1 -2.2 putative exported protein compare
Pf6N2E2_75 -1.1 -2.8 Colicin V production protein compare
Pf6N2E2_4059 -1.1 -1.2 DNA-binding protein HU-alpha compare
Pf6N2E2_2473 -1.1 -1.4 Major outer membrane lipoprotein I compare
Pf6N2E2_2507 -1.1 -3.8 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_3062 -1.1 -3.2 Membrane-associated zinc metalloprotease compare
Pf6N2E2_1147 -1.1 -2.2 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_4474 -1.1 -6.0 FIG006231: RNA-binding protein compare
Pf6N2E2_2312 -1.1 -1.7 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_2278 -1.1 -7.9 Transcription-repair coupling factor compare
Pf6N2E2_4272 -1.1 -3.5 putative membrane protein compare
Pf6N2E2_4778 -1.0 -7.5 Lysine 2-monooxygenase (EC 1.13.12.2) (from data) compare
Pf6N2E2_2371 -1.0 -1.9 Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) compare
Pf6N2E2_2367 -1.0 -2.1 hypothetical protein compare
Pf6N2E2_2708 -1.0 -4.4 Lactam utilization protein LamB compare
Pf6N2E2_6164 -1.0 -1.2 tRNA-Val-TAC compare
Pf6N2E2_5703 -1.0 -3.8 outer membrane protein H1 compare
Pf6N2E2_2992 -1.0 -2.9 Regulatory protein RecX compare
Pf6N2E2_5728 -1.0 -3.7 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_2313 -1.0 -3.1 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_4996 -1.0 -3.0 LSU m3Psi1915 methyltransferase RlmH compare
Pf6N2E2_3941 -1.0 -2.8 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_2706 -1.0 -2.8 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_3373 -1.0 -1.8 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_4886 -1.0 -5.6 Catalase (EC 1.11.1.6) compare
Pf6N2E2_1056 -1.0 -1.2 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_5704 -0.9 -3.7 Transcriptional regulatory protein PhoP compare
Pf6N2E2_5956 -0.9 -4.3 FIG004453: protein YceG like compare
Pf6N2E2_5527 -0.9 -1.2 Cold shock protein CspC compare
Pf6N2E2_3588 -0.9 -3.0 hypothetical protein compare
Pf6N2E2_4279 -0.9 -5.8 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_2258 -0.9 -5.3 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_4779 -0.9 -3.5 Transcriptional regulator, AsnC family compare
Pf6N2E2_43 -0.9 -3.3 Histidine permease YuiF compare
Pf6N2E2_1705 -0.9 -1.6 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_70 -0.9 -3.0 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_4205 -0.9 -2.7 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_2927 -0.9 -1.4 Putative signal peptide protein compare
Pf6N2E2_4647 -0.9 -6.2 Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) compare
Pf6N2E2_6095 -0.9 -2.7 tRNA-Asn-GTT compare
Pf6N2E2_2509 -0.9 -1.8 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_2128 -0.9 -3.3 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_344 -0.9 -3.0 hypothetical protein compare
Pf6N2E2_2286 -0.9 -1.3 FIG00953287: hypothetical protein compare
Pf6N2E2_5153 -0.9 -2.9 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf6N2E2_3349 -0.9 -1.3 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_4579 -0.9 -1.6 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_3134 -0.9 -0.9 hypothetical protein compare
Pf6N2E2_3261 -0.9 -2.8 hypothetical protein compare
Pf6N2E2_84 -0.9 -2.1 hypothetical protein compare
Pf6N2E2_5420 -0.9 -3.9 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
Pf6N2E2_1162 -0.9 -1.4 Transmembrane amino acid efflux protein compare
Pf6N2E2_81 -0.9 -1.8 hypothetical protein compare
Pf6N2E2_799 -0.8 -3.0 hypothetical protein compare
Pf6N2E2_5172 -0.8 -1.5 FOG: TPR repeat compare
Pf6N2E2_4197 -0.8 -4.7 DNA recombination and repair protein RecF compare
Pf6N2E2_4991 -0.8 -3.7 DedA protein compare
Pf6N2E2_4415 -0.8 -1.2 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase compare
Pf6N2E2_4888 -0.8 -6.8 Excinuclease ABC subunit A compare
Pf6N2E2_3156 -0.8 -3.0 POSSIBLE MEMBRANE PROTEIN compare
Pf6N2E2_3782 -0.8 -1.6 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_1636 -0.8 -4.8 Ferrichrome-iron receptor compare
Pf6N2E2_3370 -0.8 -5.4 DNA repair protein RecN compare
Pf6N2E2_55 -0.8 -2.4 Probable hydrolase compare
Pf6N2E2_3908 -0.8 -3.6 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_603 -0.8 -2.6 FIG00953934: hypothetical protein compare
Pf6N2E2_5967 -0.8 -2.9 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf6N2E2_5156 -0.8 -1.9 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_3300 -0.8 -2.4 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_74 -0.8 -2.3 DedD protein compare
Pf6N2E2_2756 -0.7 -3.9 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_2496 -0.7 -1.4 FIG00956575: hypothetical protein compare
Pf6N2E2_2384 -0.7 -2.5 CmpX compare
Pf6N2E2_3504 -0.7 -4.8 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_2487 -0.7 -1.0 FIG00956090: hypothetical protein compare
Pf6N2E2_700 -0.7 -2.6 Heme d1 biosynthesis protein NirL compare
Pf6N2E2_1110 -0.7 -2.0 FIG00964414: hypothetical protein compare
Pf6N2E2_2025 -0.7 -4.0 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
Pf6N2E2_4432 -0.7 -4.0 Uroporphyrinogen-III synthase (EC 4.2.1.75) compare
Pf6N2E2_4362 -0.7 -1.5 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_477 -0.7 -1.9 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf6N2E2_1966 -0.7 -2.1 SAM-dependent methyltransferases compare
Pf6N2E2_2344 -0.7 -4.9 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_4025 -0.7 -0.9 hypothetical protein compare
Pf6N2E2_5677 -0.7 -1.2 Carbon storage regulator compare
Pf6N2E2_2309 -0.7 -1.0 hypothetical protein compare
Pf6N2E2_3713 -0.7 -1.8 Acyl carrier protein compare
Pf6N2E2_3702 -0.7 -2.1 FIG00953907: hypothetical protein compare
Pf6N2E2_5664 -0.7 -3.2 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
Pf6N2E2_4999 -0.7 -1.6 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare


Specific Phenotypes

For 7 genes in this experiment

For stress L-Lysine in Pseudomonas fluorescens FW300-N2E2

For stress L-Lysine across organisms