Experiment set3IT081 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Tetracycline hydrochloride 0.0016 mg/ml

200 most important genes:

  gene name fitness t score description  
AO353_26835 -4.1 -2.8 transcriptional regulator compare
AO353_15900 -3.5 -2.4 GTP-binding protein compare
AO353_22685 -3.5 -3.4 peroxidase compare
AO353_17300 -3.3 -6.3 antibiotic transporter compare
AO353_17295 -3.3 -17.4 multidrug transporter compare
AO353_14775 -3.1 -6.0 hypothetical protein compare
AO353_07315 -3.1 -2.9 rRNA methyltransferase compare
AO353_04190 -3.0 -2.0 glycerol-3-phosphate dehydrogenase compare
AO353_17290 -2.9 -6.1 multidrug transporter compare
AO353_02570 -2.9 -3.5 hypothetical protein compare
AO353_08265 -2.8 -5.4 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_09315 -2.8 -10.7 LysR family transcriptional regulator compare
AO353_12105 -2.7 -6.1 peptidase S41 compare
AO353_04490 -2.7 -9.2 murein transglycosylase compare
AO353_11945 -2.6 -1.5 4-oxalocrotonate tautomerase compare
AO353_02280 -2.6 -2.4 DNA mismatch repair protein MutS compare
AO353_03360 -2.6 -7.7 glucose-6-phosphate dehydrogenase compare
AO353_10495 -2.5 -3.0 serine hydroxymethyltransferase compare
AO353_23710 -2.5 -5.9 protein BatD compare
AO353_08885 -2.4 -14.0 polyphosphate kinase compare
AO353_10945 -2.4 -3.6 cytochrome C compare
AO353_03795 -2.3 -4.7 fumarate hydratase compare
AO353_03615 -2.3 -3.1 cold-shock protein compare
AO353_23720 -2.3 -4.5 BatB protein compare
AO353_09275 -2.3 -3.9 DNA-directed RNA polymerase subunit omega compare
AO353_09660 -2.3 -2.3 hypothetical protein compare
AO353_20200 -2.2 -4.6 peptidylprolyl isomerase compare
AO353_03585 -2.2 -3.4 ATP-dependent DNA helicase RuvA compare
AO353_27155 -2.2 -2.9 hypothetical protein compare
AO353_12015 -2.2 -3.2 antitoxin compare
AO353_21625 -2.2 -2.9 Fe/S biogenesis protein NfuA compare
AO353_10930 -2.2 -7.7 DNA polymerase I compare
AO353_18505 -2.2 -1.5 translation initiation factor 2 compare
AO353_14370 -2.2 -6.9 glucose-6-phosphate isomerase compare
AO353_12115 -2.2 -2.5 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_16710 -2.2 -2.7 hypothetical protein compare
AO353_23725 -2.1 -5.7 hypothetical protein compare
AO353_09135 -2.1 -2.9 cytochrome C compare
AO353_08600 -2.1 -4.2 TetR family transcriptional regulator compare
AO353_13200 -2.1 -10.4 exoribonuclease R compare
AO353_04565 -2.1 -5.8 nucleoid-associated protein compare
AO353_04365 -2.0 -5.6 recombinase XerD compare
AO353_27435 -2.0 -2.3 hypothetical protein compare
AO353_25550 -2.0 -6.8 4-amino-4-deoxy-L-arabinose transferase compare
AO353_27695 -1.9 -7.6 isocitrate dehydrogenase compare
AO353_23730 -1.9 -3.3 hypothetical protein compare
AO353_13040 -1.9 -7.5 esterase compare
AO353_09345 -1.9 -2.8 hypothetical protein compare
AO353_09320 -1.9 -8.0 ATP-dependent DNA helicase RecG compare
AO353_16530 -1.9 -1.7 ribonuclease HII compare
AO353_15290 -1.8 -7.6 methyltransferase compare
AO353_10985 -1.8 -3.2 hypothetical protein compare
AO353_20170 -1.8 -4.9 trigger factor compare
AO353_09905 -1.8 -8.1 phosphate-binding protein compare
AO353_03590 -1.8 -3.7 crossover junction endodeoxyribonuclease RuvC compare
AO353_18560 -1.8 -2.7 class I peptide chain release factor compare
AO353_12130 -1.8 -3.8 preprotein translocase subunit SecB compare
AO353_21400 -1.7 -2.8 conjugal transfer protein TraR compare
AO353_13220 -1.7 -5.9 hypothetical protein compare
AO353_25505 -1.7 -8.1 4-amino-4-deoxy-L-arabinose transferase compare
AO353_06050 -1.7 -5.4 exodeoxyribonuclease V subunit gamma compare
AO353_02175 -1.7 -3.0 carbon storage regulator compare
AO353_02440 -1.7 -9.4 peptidase S41 compare
AO353_00495 -1.7 -2.4 DNA topoisomerase I compare
AO353_09250 -1.7 -2.8 exodeoxyribonuclease III compare
AO353_08765 -1.7 -4.7 hypothetical protein compare
AO353_16940 -1.7 -5.3 deoxycytidine triphosphate deaminase compare
AO353_12500 -1.7 -2.1 shikimate kinase compare
AO353_00515 -1.6 -3.4 hypothetical protein compare
AO353_16915 -1.6 -8.6 hypothetical protein compare
AO353_22580 -1.6 -2.9 3-demethylubiquinone-9 3-methyltransferase compare
AO353_18555 -1.6 -9.6 aromatic amino acid transporter compare
AO353_07515 -1.6 -2.1 transporter compare
AO353_21425 -1.6 -3.6 hypothetical protein compare
AO353_19020 -1.6 -2.6 hypothetical protein compare
AO353_09045 -1.6 -2.2 hypothetical protein compare
AO353_19145 -1.6 -3.6 protease HtpX compare
AO353_09890 -1.5 -4.3 phosphate ABC transporter ATP-binding protein compare
AO353_22800 -1.5 -3.0 sulfite reductase compare
AO353_19015 -1.5 -9.1 hypothetical protein compare
AO353_05150 -1.5 -4.5 ABC transporter ATP-binding protein compare
AO353_03420 -1.5 -4.3 phosphogluconate dehydratase compare
AO353_17175 -1.5 -2.3 beta-ketoadipyl CoA thiolase compare
AO353_08775 -1.5 -2.0 cell division protein ZapA compare
AO353_14940 -1.5 -3.8 malate:quinone oxidoreductase compare
AO353_06045 -1.5 -5.7 exodeoxyribonuclease V subunit beta compare
AO353_06865 -1.5 -9.6 catalase compare
AO353_15185 -1.5 -4.2 ATPase compare
AO353_25990 -1.5 -5.7 aspartyl beta-hydroxylase compare
AO353_03840 -1.5 -2.6 ABC transporter ATP-binding protein compare
AO353_23735 -1.5 -6.2 AAA family ATPase compare
AO353_19280 -1.5 -2.1 hypothetical protein compare
AO353_13390 -1.5 -6.3 N-acylglucosamine 2-epimerase compare
AO353_13720 -1.5 -9.3 arginine decarboxylase compare
AO353_09950 -1.5 -3.4 aspartate ammonia-lyase compare
AO353_27410 -1.4 -2.8 hypothetical protein compare
AO353_01215 -1.4 -7.0 hypothetical protein compare
AO353_09500 -1.4 -4.2 hypothetical protein compare
AO353_05145 -1.4 -4.6 ABC transporter permease compare
AO353_19030 -1.4 -5.8 phospho-2-dehydro-3-deoxyheptonate aldolase compare
AO353_18780 -1.4 -5.4 cobyrinic acid a,c-diamide synthase compare
AO353_13225 -1.4 -2.9 50S ribosomal protein L9 compare
AO353_00825 -1.4 -3.4 porin compare
AO353_05135 -1.4 -7.1 toluene tolerance protein compare
AO353_00860 -1.4 -3.9 EstX protein compare
AO353_23315 -1.4 -3.3 hypothetical protein compare
AO353_06585 -1.4 -4.7 hypothetical protein compare
AO353_16495 -1.4 -4.5 zinc metallopeptidase RseP compare
AO353_00330 -1.4 -6.5 hypothetical protein compare
AO353_11340 -1.4 -0.9 MarR family transcriptional regulator compare
AO353_28195 -1.4 -3.6 panthothenate synthetase compare
AO353_03595 -1.4 -3.3 hypothetical protein compare
AO353_22810 -1.4 -1.3 hypothetical protein compare
AO353_18120 -1.4 -2.4 hypothetical protein compare
AO353_18170 -1.4 -5.7 aspartyl beta-hydroxylase compare
AO353_09745 -1.4 -1.8 hypothetical protein compare
AO353_10995 -1.4 -6.6 hypothetical protein compare
AO353_10950 -1.3 -7.1 thiol:disulfide interchange protein compare
AO353_23715 -1.3 -4.4 hypothetical protein compare
AO353_00310 -1.3 -5.9 transaldolase compare
AO353_27375 -1.3 -2.9 DNA packaging protein compare
AO353_06415 -1.3 -3.1 hypothetical protein compare
AO353_16745 -1.3 -2.2 ArsR family transcriptional regulator compare
AO353_01035 -1.3 -2.9 hypothetical protein compare
AO353_17640 -1.3 -2.3 serine peptidase compare
AO353_02630 -1.3 -2.2 5,6-dimethylbenzimidazole synthase compare
AO353_07645 -1.3 -1.3 sarcosine oxidase subunit gamma compare
AO353_15465 -1.3 -4.6 cytochrome C oxidase compare
AO353_08980 -1.3 -2.8 heme biosynthesis operon protein HemX compare
AO353_16835 -1.3 -1.5 LuxR family transcriptional regulator compare
AO353_23450 -1.3 -2.8 LysR family transcriptional regulator compare
AO353_02250 -1.3 -2.9 chorismate synthase compare
AO353_24440 -1.3 -1.7 reactive intermediate/imine deaminase compare
AO353_14420 -1.3 -3.2 molecular chaperone DnaK compare
AO353_08120 -1.3 -2.4 hypothetical protein compare
AO353_02995 -1.3 -4.4 succinylglutamate desuccinylase compare
AO353_00105 -1.2 -1.6 hypothetical protein compare
AO353_15280 -1.2 -3.9 hypothetical protein compare
AO353_15490 -1.2 -1.6 hypothetical protein compare
AO353_27090 -1.2 -1.1 hypothetical protein compare
AO353_16600 -1.2 -6.0 stationary phase survival protein SurE compare
AO353_05735 -1.2 -8.4 hypothetical protein compare
AO353_18960 -1.2 -1.5 terminase compare
AO353_22025 -1.2 -2.2 iron-sulfur cluster repair di-iron protein compare
AO353_20815 -1.2 -2.8 LacI family transcriptional regulator compare
AO353_06040 -1.2 -2.8 exodeoxyribonuclease V subunit alpha compare
AO353_17155 -1.2 -7.4 RNA polymerase-associated protein RapA compare
AO353_27665 -1.2 -5.2 arginyl-tRNA-protein transferase compare
AO353_16805 -1.2 -4.3 recombinase RecA compare
AO353_08455 -1.2 -4.0 hypothetical protein compare
AO353_10670 -1.2 -4.6 shikimate dehydrogenase compare
AO353_02815 -1.2 -4.4 transcriptional regulator compare
AO353_09915 -1.2 -3.8 long-chain acyl-CoA thioester hydrolase compare
AO353_26045 -1.2 -1.6 hypothetical protein compare
AO353_25050 -1.2 -3.1 AraC family transcriptional regulator compare
AO353_19520 -1.2 -3.1 quinohemoprotein amine dehydrogenase subunit alpha compare
AO353_18630 -1.2 -5.6 beta-ketoacyl-ACP synthase compare
AO353_12020 -1.2 -2.1 hypothetical protein compare
AO353_09860 -1.2 -6.6 histidine kinase compare
AO353_21750 -1.1 -2.3 peptidylprolyl isomerase compare
AO353_05420 -1.1 -1.7 peptide chain release factor 3 compare
AO353_06745 -1.1 -2.2 zinc-binding protein compare
AO353_17035 -1.1 -3.3 hypothetical protein compare
AO353_09050 -1.1 -2.9 recombinase XerC compare
AO353_02465 -1.1 -1.8 hypothetical protein compare
AO353_23910 -1.1 -2.6 response regulator compare
AO353_06775 -1.1 -3.7 dTDP-4-dehydrorhamnose reductase compare
AO353_07925 -1.1 -5.7 beta-hydroxylase compare
AO353_05140 -1.1 -5.4 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_25530 -1.1 -4.1 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase compare
AO353_25570 -1.1 -6.0 glycosyltransferase compare
AO353_12145 -1.1 -3.4 nitrogen regulation protein NR(I) compare
AO353_02740 -1.1 -3.5 hydroxyacid dehydrogenase compare
AO353_03580 -1.1 -2.7 ATP-dependent DNA helicase RuvB compare
AO353_13420 -1.1 -1.7 hypothetical protein compare
AO353_07695 -1.1 -3.2 electron transfer flavoprotein subunit beta compare
AO353_02690 -1.1 -5.7 dehydrogenase compare
AO353_19180 -1.1 -3.1 GAF domain-containing protein compare
AO353_11485 -1.1 -3.3 hypothetical protein compare
AO353_20785 -1.1 -3.4 carbon storage regulator CsrA compare
AO353_18985 -1.1 -1.4 hypothetical protein compare
AO353_03710 -1.1 -2.2 formyltetrahydrofolate deformylase compare
AO353_08350 -1.1 -4.6 hypothetical protein compare
AO353_26405 -1.1 -2.7 hypothetical protein compare
AO353_10070 -1.1 -5.5 cell wall assembly protein compare
AO353_09060 -1.1 -2.3 hypothetical protein compare
AO353_06530 -1.0 -6.5 peptidase C13 compare
AO353_00865 -1.0 -5.7 phosphoenolpyruvate synthase compare
AO353_21410 -1.0 -1.6 hypothetical protein compare
AO353_13640 -1.0 -3.2 histidine kinase compare
AO353_12395 -1.0 -1.7 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
AO353_10320 -1.0 -1.1 hypothetical protein compare
AO353_22520 -1.0 -1.6 hypothetical protein compare
AO353_14040 -1.0 -3.3 chorismate mutase compare
AO353_22915 -1.0 -2.9 oxidoreductase compare
AO353_09885 -1.0 -1.7 transcriptional regulator PhoU compare
AO353_12915 -1.0 -4.4 carbamoyltransferase compare
AO353_01915 -1.0 -1.0 GlcG protein compare
AO353_22820 -1.0 -7.4 NAD-glutamate dehydrogenase compare
AO353_17380 -1.0 -2.8 hypothetical protein compare


Specific Phenotypes

For 9 genes in this experiment

For stress Tetracycline hydrochloride in Pseudomonas fluorescens FW300-N2E3

For stress Tetracycline hydrochloride across organisms