Experiment set3IT081 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Xantho_MME_glucose_casamino

200 most important genes:

  gene name fitness t score description  
Xcc-8004.2011.1 -5.7 -3.9 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.5192.1 -5.4 -11.1 hypothetical protein compare
Xcc-8004.4481.1 -5.1 -8.4 hypothetical protein compare
Xcc-8004.5193.1 -4.5 -23.4 Outer membrane protein assembly factor YaeT precursor compare
Xcc-8004.271.1 -4.3 -5.1 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.659.1 -4.3 -4.2 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.2406.1 -3.8 -11.9 Manganese transport protein MntH compare
Xcc-8004.4439.1 -3.4 -14.1 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
Xcc-8004.601.1 -3.0 -8.6 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.3346.1 -2.9 -3.4 hypothetical protein compare
Xcc-8004.1676.1 -2.9 -9.6 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
Xcc-8004.4732.1 -2.9 -2.7 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Xcc-8004.4112.1 -2.8 -5.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.657.1 -2.8 -8.8 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
Xcc-8004.2012.1 -2.7 -8.8 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.1504.1 -2.7 -3.4 type IV pili signal transduction protein PilI compare
Xcc-8004.4948.1 -2.7 -4.1 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Xcc-8004.2449.1 -2.7 -5.6 Glucokinase (EC 2.7.1.2) compare
Xcc-8004.623.1 -2.7 -4.0 Phosphoserine phosphatase compare
Xcc-8004.2259.1 -2.5 -6.3 PhbF compare
Xcc-8004.2922.1 -2.5 -3.3 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.3054.1 -2.4 -2.8 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.1196.1 -2.4 -8.1 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Xcc-8004.2217.1 -2.4 -4.5 FIG01209779: hypothetical protein compare
Xcc-8004.3130.1 -2.3 -7.0 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Xcc-8004.4073.1 -2.3 -9.8 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
Xcc-8004.2086.1 -2.2 -2.2 Xanthan biosynthesis glycosyltransferase GumH compare
Xcc-8004.505.1 -2.1 -9.2 Biotin synthase (EC 2.8.1.6) compare
Xcc-8004.1372.1 -2.0 -3.9 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.3324.1 -2.0 -4.3 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.288.1 -2.0 -2.4 Ferredoxin compare
Xcc-8004.4539.1 -2.0 -8.9 Oligopeptidase A (EC 3.4.24.70) compare
Xcc-8004.4364.1 -1.9 -5.6 Cell division protein MraZ compare
Xcc-8004.1137.1 -1.9 -3.1 FIG006231: RNA-binding protein compare
Xcc-8004.3728.1 -1.8 -1.2 hypothetical protein compare
Xcc-8004.2450.1 -1.8 -11.4 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Xcc-8004.130.1 -1.7 -8.1 hypothetical protein compare
Xcc-8004.2079.1 -1.6 -3.9 Outer membrane protein GumB, involved in the export of xanthan compare
Xcc-8004.3431.1 -1.6 -2.3 DNA repair protein RecN compare
Xcc-8004.3395.1 -1.6 -2.8 Transcriptional regulator, GntR family compare
Xcc-8004.5133.1 -1.5 -2.1 FIG01212313: hypothetical protein compare
Xcc-8004.1615.1 -1.5 -1.3 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.2357.1 -1.5 -3.7 Segregation and condensation protein B compare
Xcc-8004.3498.1 -1.5 -1.8 hypothetical protein compare
Xcc-8004.846.1 -1.5 -2.9 Protein of unknown function DUF484 compare
Xcc-8004.914.1 -1.5 -5.6 tail-specific protease compare
Xcc-8004.4752.1 -1.4 -2.6 DNA topoisomerase I (EC 5.99.1.2) compare
Xcc-8004.2401.1 -1.4 -1.9 FIG00545367: hypothetical protein compare
Xcc-8004.1086.1 -1.4 -2.1 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1718.1 -1.4 -3.0 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Xcc-8004.1336.1 -1.4 -5.2 two-component system sensor protein compare
Xcc-8004.3322.1 -1.4 -1.5 FIG01211446: hypothetical protein compare
Xcc-8004.3230.1 -1.3 -2.2 Phage DNA invertase compare
Xcc-8004.3898.1 -1.3 -1.3 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Xcc-8004.5253.1 -1.3 -1.8 hypothetical protein compare
Xcc-8004.1434.1 -1.3 -1.5 FIG000859: hypothetical protein YebC compare
Xcc-8004.270.1 -1.3 -3.7 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.3721.1 -1.2 -1.4 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Xcc-8004.5343.1 -1.2 -5.3 hypothetical protein compare
Xcc-8004.5252.1 -1.2 -4.8 FIG01210658: hypothetical protein compare
Xcc-8004.4210.1 -1.2 -5.9 Thymidine phosphorylase (EC 2.4.2.4) compare
Xcc-8004.2081.1 -1.2 -2.7 Xanthan biosynthesis chain length determinant protein GumC compare
Xcc-8004.2839.1 -1.1 -1.8 Signal transduction histidine kinase CheA (EC 2.7.3.-) compare
Xcc-8004.1436.1 -1.1 -1.5 Holliday junction DNA helicase RuvA compare
Xcc-8004.3131.1 -1.1 -4.0 hypothetical protein compare
Xcc-8004.2387.1 -1.1 -2.1 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Xcc-8004.2920.1 -1.1 -5.3 Ferrous iron transport protein B compare
Xcc-8004.3859.1 -1.1 -2.4 Two-component system regulatory protein compare
Xcc-8004.3815.1 -1.0 -2.3 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Xcc-8004.4398.1 -1.0 -4.5 Serine hydroxymethyltransferase (EC 2.1.2.1) compare
Xcc-8004.3954.1 -1.0 -3.0 HflC protein compare
Xcc-8004.290.1 -1.0 -4.1 NAD(P)H steroid dehydrogenase-like protein in alkane synthesis cluster compare
Xcc-8004.4824.1 -1.0 -6.5 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.1409.1 -1.0 -2.4 Cation:proton antiporter compare
Xcc-8004.1657.1 -1.0 -1.5 PTS system, mannose-specific IIA component compare
Xcc-8004.1768.1 -1.0 -1.8 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Xcc-8004.4510.1 -1.0 -1.7 ATP binding component of ABC-transporter compare
Xcc-8004.2422.1 -1.0 -1.9 Putative stress-responsive transcriptional regulator compare
Xcc-8004.3752.1 -1.0 -1.5 Isopenicillin N epimerase (EC 5.1.1.17) compare
Xcc-8004.4558.1 -0.9 -2.3 ABC transporter permease compare
Xcc-8004.3576.1 -0.9 -4.2 Intracellular PHB depolymerase (EC 3.1.1.-) compare
Xcc-8004.3310.1 -0.9 -3.6 Chromosome partition protein smc compare
Xcc-8004.3590.1 -0.9 -1.6 FIG01211013: hypothetical protein compare
Xcc-8004.1838.1 -0.9 -1.6 FIG002958: hypothetical protein compare
Xcc-8004.1124.1 -0.9 -1.5 RidA/YER057c/UK114 superfamily, group 3 compare
Xcc-8004.726.1 -0.9 -1.3 Putative preQ0 transporter compare
Xcc-8004.234.1 -0.9 -6.1 cardiolipin synthase compare
Xcc-8004.4493.1 -0.9 -1.8 sugar translocase compare
Xcc-8004.2199.1 -0.9 -1.9 Hemerythrin-like protein PA1673 compare
Xcc-8004.1135.1 -0.9 -2.5 FIG01210448: hypothetical protein compare
Xcc-8004.3978.1 -0.9 -1.9 FIG01211989: hypothetical protein compare
Xcc-8004.1108.1 -0.9 -1.6 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Xcc-8004.4480.1 -0.9 -5.0 Phosphomannomutase (EC 5.4.2.8) compare
Xcc-8004.5352.1 -0.9 -1.2 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Xcc-8004.3231.1 -0.9 -2.2 hypothetical protein compare
Xcc-8004.5132.1 -0.9 -3.7 Heavy metal RND efflux outer membrane protein, CzcC family compare
Xcc-8004.2561.1 -0.9 -3.8 FIG01213638: hypothetical protein compare
Xcc-8004.5130.1 -0.9 -3.3 hypothetical protein compare
Xcc-8004.5205.1 -0.9 -3.0 FIG01210461: hypothetical protein compare
Xcc-8004.1673.1 -0.9 -3.2 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Xcc-8004.4373.1 -0.8 -2.2 LppC putative lipoprotein compare
Xcc-8004.3816.1 -0.8 -4.3 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Xcc-8004.5087.1 -0.8 -2.6 FIG027190: Putative transmembrane protein compare
Xcc-8004.3103.1 -0.8 -1.8 hypothetical protein compare
Xcc-8004.934.1 -0.8 -1.2 FolM Alternative dihydrofolate reductase 1 compare
Xcc-8004.2569.1 -0.8 -0.7 Single-stranded DNA-binding protein in PFGI-1-like cluster compare
Xcc-8004.4105.1 -0.8 -1.6 Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) compare
Xcc-8004.638.1 -0.8 -5.2 Bacterioferritin compare
Xcc-8004.3817.1 -0.8 -2.9 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Xcc-8004.4306.1 -0.8 -1.9 hypothetical protein compare
Xcc-8004.3722.1 -0.8 -0.8 HrpB7 protein compare
Xcc-8004.1610.1 -0.8 -1.9 MFS transporter compare
Xcc-8004.2215.1 -0.8 -0.9 hypothetical protein compare
Xcc-8004.689.1 -0.8 -1.1 ATP-dependent DNA helicase recG (EC 3.6.1.-) compare
Xcc-8004.589.1 -0.8 -1.5 hypothetical protein compare
Xcc-8004.2579.1 -0.8 -1.8 Transcriptional regulator in PFGI-1-like cluster compare
Xcc-8004.1677.1 -0.8 -1.7 FIG01209993: hypothetical protein compare
Xcc-8004.1511.1 -0.8 -1.8 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.2563.1 -0.8 -1.5 FIG01210540: hypothetical protein compare
Xcc-8004.1359.1 -0.8 -2.9 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.2110.1 -0.8 -1.1 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1380.1 -0.8 -1.6 COG2827: putative endonuclease containing a URI domain compare
Xcc-8004.3863.1 -0.8 -2.8 Septum site-determining protein MinD compare
Xcc-8004.1809.1 -0.7 -0.8 extracellular serine protease compare
Xcc-8004.1873.1 -0.7 -1.6 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Xcc-8004.2314.1 -0.7 -3.8 FIG01209975: hypothetical protein compare
Xcc-8004.4675.1 -0.7 -1.5 FIG01211280: hypothetical protein compare
Xcc-8004.1361.1 -0.7 -1.3 Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB) compare
Xcc-8004.5326.1 -0.7 -1.3 Mobile element protein compare
Xcc-8004.764.1 -0.7 -1.4 FIG01213873: hypothetical protein compare
Xcc-8004.777.1 -0.7 -2.2 FIG01211805: hypothetical protein compare
Xcc-8004.2928.1 -0.7 -2.2 FIG01210777: hypothetical protein compare
Xcc-8004.5189.1 -0.7 -1.8 FIG01212821: hypothetical protein compare
Xcc-8004.3676.1 -0.7 -2.1 Translation elongation factor LepA compare
Xcc-8004.2105.1 -0.7 -2.7 FIG01210123: hypothetical protein compare
Xcc-8004.5122.1 -0.7 -2.2 hypothetical protein compare
Xcc-8004.4836.1 -0.7 -2.9 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
Xcc-8004.1113.1 -0.7 -1.5 hypothetical protein compare
Xcc-8004.3979.1 -0.7 -3.7 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.3522.1 -0.7 -1.8 FIG01212902: hypothetical protein compare
Xcc-8004.1962.1 -0.7 -2.4 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Xcc-8004.2055.1 -0.7 -1.2 Mobile element protein compare
Xcc-8004.2372.1 -0.7 -2.5 Pheromone shutdown protein compare
Xcc-8004.429.1 -0.7 -1.3 hypothetical protein compare
Xcc-8004.1636.1 -0.7 -2.9 hypothetical protein compare
Xcc-8004.2930.1 -0.7 -1.1 hypothetical protein compare
Xcc-8004.1126.1 -0.7 -1.5 Electron transfer protein azurin I compare
Xcc-8004.2577.1 -0.7 -1.1 FIG034647: hypothetical protein in PFGI-1-like cluster compare
Xcc-8004.1028.1 -0.7 -3.3 Sensor protein PhoQ (EC 2.7.13.3) compare
Xcc-8004.1919.1 -0.7 -3.0 FIG056164: rhomboid family serine protease compare
Xcc-8004.4237.1 -0.7 -2.6 hypothetical protein compare
Xcc-8004.2447.1 -0.7 -4.1 Phosphogluconate dehydratase (EC 4.2.1.12) compare
Xcc-8004.1790.1 -0.7 -2.2 Zinc uptake regulation protein ZUR compare
Xcc-8004.3740.1 -0.7 -1.8 Type III secretion HpaB protein compare
Xcc-8004.4768.1 -0.6 -1.5 FIG01210642: hypothetical protein compare
Xcc-8004.703.1 -0.6 -1.2 hypothetical protein compare
Xcc-8004.1559.1 -0.6 -2.9 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Xcc-8004.4366.1 -0.6 -3.2 COG3332 compare
Xcc-8004.2074.1 -0.6 -2.0 Transcriptional regulator, MerR family compare
Xcc-8004.2246.1 -0.6 -1.9 FIG01211121: hypothetical protein compare
Xcc-8004.2343.1 -0.6 -1.2 Cytochrome c-type biogenesis protein CcmE, heme chaperone compare
Xcc-8004.2282.1 -0.6 -1.5 tRNA:Cm32/Um32 methyltransferase compare
Xcc-8004.2169.1 -0.6 -1.2 Preprotein translocase subunit YajC (TC 3.A.5.1.1) compare
Xcc-8004.2866.1 -0.6 -2.2 hypothetical protein compare
Xcc-8004.1622.1 -0.6 -1.7 Membrane protein with DUF350 domain compare
Xcc-8004.4025.1 -0.6 -3.7 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
Xcc-8004.2337.1 -0.6 -2.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.2846.1 -0.6 -2.1 Mobile element protein compare
Xcc-8004.3549.1 -0.6 -2.3 FIG01211514: hypothetical protein compare
Xcc-8004.4049.1 -0.6 -2.3 Cell division trigger factor (EC 5.2.1.8) compare
Xcc-8004.3188.1 -0.6 -2.0 Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE compare
Xcc-8004.1427.1 -0.6 -2.0 Type I antifreeze protein compare
Xcc-8004.2730.1 -0.6 -2.8 Molybdopterin biosynthesis protein MoeB compare
Xcc-8004.3955.1 -0.6 -2.6 HflK protein compare
Xcc-8004.1960.1 -0.6 -3.1 Glyoxalase family protein compare
Xcc-8004.5098.1 -0.6 -1.4 hypothetical protein compare
Xcc-8004.1468.1 -0.6 -1.6 FIG01210319: hypothetical protein compare
Xcc-8004.3715.1 -0.6 -1.1 FIG01212258: hypothetical protein compare
Xcc-8004.4046.1 -0.6 -3.8 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.4844.1 -0.6 -0.7 FIG01210764: hypothetical protein compare
Xcc-8004.1394.1 -0.6 -1.9 Cobyrinic acid A,C-diamide synthase compare
Xcc-8004.4507.1 -0.6 -3.0 Glycosyltransferase compare
Xcc-8004.344.1 -0.6 -2.0 FIG01211436: hypothetical protein compare
Xcc-8004.5369.1 -0.6 -3.6 Lipoprotein compare
Xcc-8004.3839.1 -0.6 -3.0 Arginine-tRNA-protein transferase (EC 2.3.2.8) compare
Xcc-8004.1007.1 -0.6 -1.0 acetylxylan esterase compare
Xcc-8004.3787.1 -0.6 -1.2 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Xcc-8004.2799.1 -0.6 -3.9 response regulator compare
Xcc-8004.5203.1 -0.6 -1.0 Twin-arginine translocation protein TatB compare
Xcc-8004.1334.1 -0.6 -1.0 hypothetical protein compare
Xcc-8004.1891.1 -0.6 -0.8 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) compare
Xcc-8004.4071.1 -0.6 -1.8 hypothetical protein compare
Xcc-8004.1900.1 -0.6 -1.5 Acyl-CoA thioester hydrolase compare
Xcc-8004.3401.1 -0.6 -1.2 FIG01209914: hypothetical protein compare
Xcc-8004.4328.1 -0.5 -1.8 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3942.1 -0.5 -1.1 RelE/StbE replicon stabilization toxin compare
Xcc-8004.5131.1 -0.5 -2.5 Probable Co/Zn/Cd efflux system membrane fusion protein compare
Xcc-8004.5201.1 -0.5 -1.3 FIG01211164: hypothetical protein compare
Xcc-8004.2463.1 -0.5 -2.3 FIG01209842: hypothetical protein compare
Xcc-8004.2987.1 -0.5 -1.7 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in xantho_mme_glucose_casamino experiments