Experiment set3IT081 for Caulobacter crescentus NA1000

Compare to:

PYE with Cobalt chloride hexahydrate 0.04 mM

200 most detrimental genes:

  gene name fitness t score description  
CCNA_02387 +3.2 26.9 glutathione reductase compare
CCNA_02663 +3.0 5.6 DnaK suppressor protein DksA compare
CCNA_01712 +2.8 24.0 CopY/TcrY family transcriptional repressor compare
CCNA_03030 +2.7 17.6 cytochrome c2 compare
CCNA_02957 +2.6 8.1 ArsR-family transcriptional regulator compare
CCNA_00699 +2.6 12.0 LSU ribosomal protein L28P compare
CCNA_03064 +2.4 15.6 PadR-family transcriptional regulator compare
CCNA_02910 +2.4 18.4 TonB-dependent receptor compare
CCNA_02000 +2.3 4.6 SSU ribosomal protein S2P compare
CCNA_01361 +2.3 5.4 PepSY superfamily protein compare
CCNA_02103 +2.3 15.3 hypothetical protein compare
CCNA_02416 +2.3 12.4 DNA-binding protein HU compare
CCNA_03612 +2.2 14.0 HTH XRE-family transcriptional regulator compare
CCNA_00939 +2.2 7.7 MarR-family transcriptional regulator compare
CCNA_00735 +2.2 7.4 beta-barrel assembly machine (BAM) protein BamF compare
CCNA_00161 +2.2 14.8 hypothetical protein compare
CCNA_01058 +2.2 13.9 helix-turn-helix transcriptional regulator compare
CCNA_03252 +2.2 15.8 CopY/TcrY-family transcriptional regulator compare
CCNA_02133 +2.1 16.0 glucokinase compare
CCNA_00518 +2.1 11.6 LSU ribosomal protein L25P compare
CCNA_01059 +2.1 17.0 S-layer protein rsaA compare
CCNA_00962 +2.1 11.3 MarR-family transcriptional regulator compare
CCNA_00521 +2.1 6.9 antitoxin protein compare
CCNA_03287 +2.1 12.9 PadR-family transcriptional regulator compare
CCNA_03043 +2.1 8.8 type IV pilin protein pilA compare
CCNA_02316 +2.1 10.4 hypothetical protein compare
CCNA_01814 +2.0 14.2 nitrogen regulation protein ntrB compare
CCNA_03289 +2.0 17.8 HicB-family RNA-binding protein compare
CCNA_01815 +2.0 14.7 nitrogen assimilation regulatory protein NtrC compare
CCNA_00924 +2.0 11.1 MarR/EmrR family transcriptional regulator compare
CCNA_02646 +2.0 4.2 cell division protein MraZ compare
CCNA_01526 +2.0 8.3 flagellar biosynthesis regulatory protein flaF compare
CCNA_01790 +2.0 7.8 protein translocase subunit secG compare
CCNA_02980 +2.0 13.2 tryptophan 2,3-dioxygenase compare
CCNA_00954 +2.0 14.0 AAA-family response regulator flbD compare
CCNA_02075 +1.9 3.1 peptidoglycan binding endopeptidase DipM compare
CCNA_00162 +1.9 9.6 hypothetical protein compare
CCNA_02328 +1.9 1.6 cell cycle regulatory protein GcrA compare
CCNA_00505 +1.9 8.9 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CCNA_03012 +1.9 11.8 peroxiredoxin compare
CCNA_02315 +1.9 8.2 Cro/CI-family transcriptional regulator compare
CCNA_01722 +1.9 4.8 hypothetical protein compare
CCNA_01573 +1.8 9.4 ArsR-family transcriptional regulator compare
CCNA_03519 +1.8 10.6 PadR-family transcriptional regulator compare
CCNA_03271 +1.8 12.3 methionine gamma-lyase compare
CCNA_02289 +1.8 11.4 MarR/EmrR family transcriptional regulator compare
CCNA_01979 +1.8 8.0 LexA repressor compare
CCNA_01840 +1.8 14.1 MerR-family transcriptional regulator compare
CCNA_01094 +1.8 4.2 hypothetical protein compare
CCNA_01525 +1.8 10.0 flagellar biosynthesis repressor flbT compare
CCNA_02448 +1.8 11.3 hypothetical protein compare
CCNA_03961 +1.8 9.5 hypothetical protein compare
CCNA_01751 +1.8 7.5 aminodeoxychorismate lyase compare
CCNA_01242 +1.7 12.7 amino acid permease compare
CCNA_02447 +1.7 10.4 PspA/IM30 family regulatory protein compare
CCNA_03498 +1.7 12.7 MarR-family transcriptional regulator compare
CCNA_01220 +1.7 7.1 7-keto-8-aminopelargonate synthetase compare
CCNA_01684 +1.7 9.3 phenylalanine-4-hydroxylase compare
CCNA_00781 +1.7 12.7 two-component receiver protein CpdR compare
CCNA_02225 +1.7 9.0 ArsR family/SAM-dependent transcriptional regulator compare
CCNA_01931 +1.7 10.8 TetR-family transcriptional regulator compare
CCNA_01801 +1.7 8.8 hypothetical protein compare
CCNA_03805 +1.7 12.8 PadR-family transcriptional regulator compare
CCNA_02836 +1.7 6.7 hypothetical protein compare
CCNA_00684 +1.7 11.9 anti-sigma factor, ChrR-family compare
CCNA_03989 +1.7 12.6 MarR-family HTH transcriptional regulator / N-acyltransferase compare
CCNA_03325 +1.7 6.8 hypothetical protein compare
CCNA_01739 +1.7 8.1 LSU ribosomal protein L9P compare
CCNA_02042 +1.6 10.9 trigger factor chaperone compare
CCNA_00032 +1.6 5.5 antitoxin protein VapB compare
CCNA_03479 +1.6 8.5 MarR-family transcriptional regulator compare
CCNA_00920 +1.6 5.7 hypothetical protein compare
CCNA_01010 +1.6 12.1 histidine ammonia-lyase compare
CCNA_03129 +1.6 11.7 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_02339 +1.6 10.2 methyltransferase compare
CCNA_00944 +1.6 8.8 flagellar hook length determination protein compare
CCNA_01655 +1.6 9.4 cyclophilin-type peptidylprolyl cis-trans isomerase compare
CCNA_01913 +1.6 10.5 MarR-family transcriptional regulator compare
CCNA_01186 +1.6 8.4 hypothetical protein compare
CCNA_01763 +1.6 10.7 multifunctional aminopeptidase compare
CCNA_03513 +1.6 8.4 cytochrome c oxidase subunit III coxC compare
CCNA_02617 +1.6 12.0 histidinol-phosphate aminotransferase compare
CCNA_01445 +1.6 7.0 hypothetical protein compare
CCNA_01959 +1.6 4.0 3-dehydroquinate dehydratase compare
CCNA_03281 +1.6 13.0 AsnC-family transcriptional regulator compare
CCNA_02132 +1.6 4.6 LacI-family transcriptional regulator compare
CCNA_02619 +1.6 12.4 stomatin/prohibitin-related protein compare
CCNA_03420 +1.6 9.2 hypothetical protein compare
CCNA_01011 +1.5 8.1 imidazolonepropionase compare
CCNA_03951 +1.5 7.5 hypothetical protein compare
CCNA_00919 +1.5 6.9 hypothetical protein compare
CCNA_01393 +1.5 11.4 soluble lytic murein transglycosylase compare
CCNA_02616 +1.5 9.9 4-hydroxyphenylpyruvate dioxygenase compare
CCNA_00354 +1.5 7.9 NlpC/P60 CHAP domain amidase protein compare
CCNA_02063 +1.5 6.2 beta-barrel assembly machine (BAM) protein BamD compare
CCNA_02135 +1.5 9.4 6-phosphogluconolactonase compare
CCNA_03689 +1.5 11.1 alanine dehydrogenase compare
CCNA_01780 +1.5 10.4 exopolyphosphatase compare
CCNA_02591 +1.5 7.5 glutaredoxin compare
CCNA_03123 +1.5 8.8 ArsR-family transcriptional regulator compare
CCNA_01008 +1.5 11.2 urocanate hydratase compare
CCNA_02025 +1.5 6.6 hypothetical protein compare
CCNA_01006 +1.5 5.9 flagellar hook-basal body complex protein FliE compare
CCNA_00947 +1.5 11.4 flagellar hook protein FlgE compare
CCNA_00999 +1.5 6.2 PAS-family motility and cell cycle regulatory protein MopJ compare
CCNA_00210 +1.5 11.7 TonB-dependent receptor compare
CCNA_03062 +1.5 9.0 cell wall hydrolase family protein compare
CCNA_03280 +1.5 13.0 pyruvate ferredoxin/flavodoxin oxidoreductase family protein compare
CCNA_00375 +1.5 5.5 hypothetical protein compare
CCNA_00846 +1.5 12.8 proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase compare
CCNA_02004 +1.5 3.6 SOS-induced inhibitor of cell division SidA compare
CCNA_00447 +1.4 8.2 chemotaxis protein cheD compare
CCNA_00945 +1.4 8.5 chemotaxis protein MotD compare
CCNA_02575 +1.4 3.4 hypothetical protein compare
CCNA_03379 +1.4 2.7 Cro/CI family transcriptional regulator compare
CCNA_02021 +1.4 5.1 hypothetical protein compare
CCNA_00756 +1.4 3.5 hypothetical protein compare
CCNA_R0075 +1.4 3.3 tRNA-Met compare
CCNA_01181 +1.4 8.1 hypothetical protein compare
CCNA_02026 +1.4 5.0 hypothetical protein compare
CCNA_01802 +1.4 5.5 hypothetical protein compare
CCNA_03938 +1.4 4.6 hypothetical protein compare
CCNA_00290 +1.4 10.9 autotransporter protein compare
CCNA_02341 +1.4 8.3 small heat shock protein compare
CCNA_03518 +1.4 10.3 cytochrome c oxidase polypeptide II coxB compare
CCNA_01804 +1.4 9.0 glutathione peroxidase compare
CCNA_03464 +1.4 6.2 glycine cleavage system H protein compare
CCNA_02846 +1.4 10.0 DegP/HtrA-family serine protease compare
CCNA_02467 +1.4 8.9 polyisoprenylphosphate hexose-1-phosphotransferase pssZ compare
CCNA_03515 +1.3 5.1 hypothetical protein compare
CCNA_01578 +1.3 8.8 beta-lactamase repressor compare
CCNA_02835 +1.3 7.4 CpxP-related protein compare
CCNA_00441 +1.3 8.2 chemotaxis receiver domain protein cheYI compare
CCNA_02644 +1.3 4.1 cell division protein FtsL compare
CCNA_01918 +1.3 8.0 cyclic di-GMP effector protein PopA compare
CCNA_01851 +1.3 10.9 quinol cytochrome oxidase polypeptide II compare
CCNA_01528 +1.3 7.6 flagellin fljK compare
CCNA_01063 +1.3 7.0 UDP-perosamine 4-acetyl transferase compare
CCNA_00950 +1.3 9.7 flagellar M-ring protein FliF compare
CCNA_03089 +1.3 7.3 hypothetical protein compare
CCNA_00527 +1.3 8.3 hypothetical protein compare
CCNA_02081 +1.3 5.2 Sec-independent protein translocase protein tatB compare
CCNA_00459 +1.3 8.8 Na+/H+ antiporter nhaA compare
CCNA_03215 +1.3 8.4 ARO8 family aminotransferase/HTH DNA-binding protein compare
CCNA_01235 +1.3 7.6 AcrR-family transcriptional regulator compare
CCNA_01968 +1.3 3.2 pentapeptide repeats containing protein compare
CCNA_03514 +1.3 8.1 cytochrome c oxidase assembly protein ctaG compare
CCNA_00031 +1.3 7.2 toxin protein VapC compare
CCNA_01724 +1.3 2.4 hypothetical protein compare
CCNA_00953 +1.3 4.9 flagellar motor switch protein FliN compare
CCNA_03108 +1.3 10.1 TonB-dependent outer membrane receptor compare
CCNA_01222 +1.3 5.3 NADH-ubiquinone oxidoreductase compare
CCNA_R0037 +1.3 4.8 tRNA-Glu compare
CCNA_01728 +1.3 7.5 short chain dehydrogenase compare
CCNA_01949 +1.3 4.8 bactofilin A BacA compare
CCNA_03136 +1.2 5.6 flagellar export protein FliJ compare
CCNA_01848 +1.2 8.4 quinol cytochrome oxidase polypeptide IV compare
CCNA_01619 +1.2 7.1 NYN domain protein compare
CCNA_01742 +1.2 5.4 hypothetical protein compare
CCNA_01629 +1.2 7.8 signal peptidase I compare
CCNA_02576 +1.2 9.1 phosphoribosylamidoimidazole-succinocarboxamide synthase compare
CCNA_02567 +1.2 8.4 sensory transduction histidine kinase pleC compare
CCNA_00834 +1.2 5.9 flagellin FljM compare
CCNA_02030 +1.2 3.4 hypothetical protein compare
CCNA_03371 +1.2 6.0 bacterioferritin compare
CCNA_03132 +1.2 6.2 transcriptional regulator, antitoxin protein higA compare
CCNA_01731 +1.2 6.0 colicin V production protein CvpA compare
CCNA_00114 +1.2 4.5 MarR/EmrR-family transcriptional regulator compare
CCNA_00998 +1.2 5.8 ROS/MUCR transcriptional regulator compare
CCNA_02073 +1.2 4.3 cupin domain transcriptional regulator compare
CCNA_02732 +1.2 2.8 hypothetical protein compare
CCNA_03858 +1.2 9.6 protein translocase subunit secB compare
CCNA_03643 +1.2 1.8 succinate dehydrogenase membrane anchor subunit compare
CCNA_00051 +1.2 7.7 magnesium and cobalt efflux protein CorC compare
CCNA_01541 +1.2 8.3 LysR-family transcriptional regulator compare
CCNA_00506 +1.2 7.4 cytochrome b compare
CCNA_02134 +1.2 9.2 phosphogluconate dehydratase compare
CCNA_03609 +1.2 5.7 outer membrane protein compare
CCNA_03808 +1.2 9.1 organic solvent resistance transport system Ttg2C protein compare
CCNA_01217 +1.2 7.7 phosphatidylglycerophosphate synthase compare
CCNA_03949 +1.2 5.7 hypothetical protein compare
CCNA_03273 +1.2 5.9 hypothetical protein compare
CCNA_00497 +1.2 7.9 putative rhamnosyl transferase compare
CCNA_01375 +1.2 4.7 lactoylglutathione lyase compare
CCNA_01681 +1.2 4.6 RimI-like acetyltransferase compare
CCNA_01678 +1.2 7.4 arginine N-succinyltransferase, beta chain compare
CCNA_01447 +1.2 7.8 homoserine dehydrogenase compare
CCNA_00895 +1.2 7.3 hypothetical protein compare
CCNA_03762 +1.2 4.9 acetolactate synthase-related protein compare
CCNA_00952 +1.2 7.2 flagellar assembly protein FlbE/FliH compare
CCNA_00400 +1.2 5.9 MarR/EmrR-family transcriptional regulator compare
CCNA_00352 +1.2 7.1 integral membrane protein compare
CCNA_00803 +1.2 5.3 chemotaxis protein cheW compare
CCNA_03622 +1.2 6.8 beta-lactamase repressor compare
CCNA_03161 +1.1 4.8 transcriptional regulator xylR compare
CCNA_02805 +1.1 4.7 hypothetical protein compare
CCNA_02127 +1.1 8.2 oxacillin resistance-associated protein fmtC compare
CCNA_00726 +1.1 8.9 acyl-CoA dehydrogenase compare
CCNA_01406 +1.1 5.5 metal-dependent hydrolase compare
CCNA_01193 +1.1 8.6 amylosucrase compare


Specific Phenotypes

None in this experiment

For Caulobacter crescentus NA1000 in stress experiments

For stress Cobalt chloride hexahydrate across organisms