Experiment set3IT080 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Choline Lysine 20 mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_4353 -7.9 -7.7 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_2129 -6.0 -5.9 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_3941 -5.4 -5.2 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_5705 -5.1 -4.7 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_4153 -5.1 -3.0 Sensory box histidine kinase compare
Pf6N2E2_5006 -5.1 -12.0 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4579 -5.0 -4.0 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_4204 -4.9 -3.4 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_3611 -4.9 -3.0 HflC protein compare
Pf6N2E2_2753 -4.9 -4.8 HtrA protease/chaperone protein compare
Pf6N2E2_3264 -4.8 -5.0 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_5929 -4.8 -9.0 FIG00954461: hypothetical protein compare
Pf6N2E2_5150 -4.7 -8.9 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_4584 -4.7 -3.8 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_3834 -4.5 -9.2 Lipoprotein NlpD compare
Pf6N2E2_3285 -4.5 -5.8 Rod shape-determining protein MreD compare
Pf6N2E2_5178 -4.5 -3.1 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_2824 -4.3 -14.1 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_4477 -4.3 -3.4 Z-ring-associated protein ZapA compare
Pf6N2E2_5430 -4.3 -10.6 Transglycosylase, Slt family compare
Pf6N2E2_4585 -4.2 -15.4 Cell division protein FtsX compare
Pf6N2E2_5882 -4.2 -7.2 Putative membrane protein conserved
Pf6N2E2_5001 -4.2 -4.0 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_5544 -4.2 -9.0 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_2218 -4.1 -7.8 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_3661 -4.1 -7.3 hypothetical protein compare
Pf6N2E2_2506 -4.0 -16.7 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_4996 -3.9 -4.5 LSU m3Psi1915 methyltransferase RlmH compare
Pf6N2E2_3617 -3.9 -7.1 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_2510 -3.8 -7.0 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_4611 -3.8 -5.2 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_3301 -3.8 -12.3 ABC transporter, ATP-binding protein compare
Pf6N2E2_2508 -3.7 -6.4 hypothetical protein compare
Pf6N2E2_4187 -3.7 -7.5 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_4369 -3.6 -4.8 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_2825 -3.6 -6.4 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_5245 -3.6 -7.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4352 -3.5 -5.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_4762 -3.5 -4.4 Biotin synthesis protein BioH compare
Pf6N2E2_5733 -3.4 -5.3 NLP/P60 family protein compare
Pf6N2E2_2823 -3.4 -5.4 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_5172 -3.4 -3.1 FOG: TPR repeat compare
Pf6N2E2_3655 -3.3 -12.2 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_4162 -3.3 -5.1 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_2278 -3.2 -16.8 Transcription-repair coupling factor compare
Pf6N2E2_4761 -3.1 -11.6 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_4764 -3.1 -6.2 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_2938 -3.1 -7.9 Outer membrane lipoprotein compare
Pf6N2E2_4647 -3.1 -11.7 Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) compare
Pf6N2E2_5734 -3.0 -8.9 NLP/P60 family protein compare
Pf6N2E2_4759 -3.0 -14.0 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_624 -3.0 -6.0 hypothetical protein PA3071 compare
Pf6N2E2_625 -3.0 -5.5 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_3833 -3.0 -6.3 hypothetical protein compare
Pf6N2E2_2675 -3.0 -1.8 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_3517 -2.9 -5.3 tRNA dihydrouridine synthase B (EC 1.-.-.-) compare
Pf6N2E2_5703 -2.9 -4.8 outer membrane protein H1 compare
Pf6N2E2_773 -2.9 -7.7 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
Pf6N2E2_5342 -2.9 -3.2 21 kDa hemolysin precursor compare
Pf6N2E2_5727 -2.9 -5.5 FIG00955360: hypothetical protein compare
Pf6N2E2_2513 -2.8 -3.2 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_3461 -2.8 -2.5 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_2754 -2.8 -4.6 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf6N2E2_4763 -2.8 -11.0 Biotin synthesis protein BioC compare
Pf6N2E2_3607 -2.8 -8.7 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_3062 -2.8 -5.2 Membrane-associated zinc metalloprotease compare
Pf6N2E2_5128 -2.7 -3.6 COG1496: Uncharacterized conserved protein compare
Pf6N2E2_3658 -2.7 -9.7 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_5704 -2.7 -4.4 Transcriptional regulatory protein PhoP compare
Pf6N2E2_621 -2.7 -7.0 TPR domain protein in aerotolerance operon compare
Pf6N2E2_2752 -2.7 -9.7 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_75 -2.7 -3.3 Colicin V production protein compare
Pf6N2E2_2219 -2.7 -3.6 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_586 -2.7 -7.3 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) compare
Pf6N2E2_3349 -2.6 -3.5 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_5328 -2.6 -5.3 FIG00958649: hypothetical protein compare
Pf6N2E2_3664 -2.6 -7.1 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_4416 -2.6 -3.4 Tyrosine recombinase XerC compare
Pf6N2E2_3656 -2.6 -7.0 Probable transcription regulator Mig-14 compare
Pf6N2E2_4631 -2.5 -10.4 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_620 -2.5 -7.1 BatD compare
Pf6N2E2_3460 -2.4 -2.4 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_623 -2.4 -1.7 FIG00954674: hypothetical protein compare
Pf6N2E2_3876 -2.4 -5.0 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_3663 -2.4 -8.1 Glycosyl transferase compare
Pf6N2E2_5816 -2.4 -2.3 Smr domain protein compare
Pf6N2E2_2473 -2.4 -1.7 Major outer membrane lipoprotein I compare
Pf6N2E2_5956 -2.4 -6.2 FIG004453: protein YceG like compare
Pf6N2E2_1056 -2.4 -1.6 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_2507 -2.3 -6.7 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_2746 -2.3 -7.0 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor compare
Pf6N2E2_5316 -2.3 -2.5 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_4999 -2.3 -6.0 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_144 -2.3 -14.7 Uncharacterized protein YtfM precursor compare
Pf6N2E2_622 -2.3 -5.9 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_3351 -2.3 -4.6 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_447 -2.2 -5.5 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Pf6N2E2_2756 -2.2 -7.6 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_2080 -2.2 -1.7 hypothetical protein compare
Pf6N2E2_2940 -2.1 -5.3 OmpA family protein compare
Pf6N2E2_3612 -2.1 -3.3 HflK protein compare
Pf6N2E2_4993 -2.1 -1.7 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_3373 -2.1 -4.2 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_2320 -2.1 -5.0 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_3659 -2.0 -5.2 Protein fixF compare
Pf6N2E2_445 -2.0 -6.1 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_145 -2.0 -7.7 putative exported protein compare
Pf6N2E2_2586 -2.0 -1.6 Hpt domain protein compare
Pf6N2E2_3791 -2.0 -8.4 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_2261 -2.0 -8.0 VacJ-like lipoprotein precursor compare
Pf6N2E2_2325 -1.9 -5.4 Recombination protein RecR compare
Pf6N2E2_2317 -1.9 -5.1 Putative analog of CcoH, COG3198 compare
Pf6N2E2_5633 -1.9 -10.8 Aromatic amino acid transport protein AroP compare
Pf6N2E2_3648 -1.9 -4.1 Ethidium bromide-methyl viologen resistance protein EmrE compare
Pf6N2E2_2509 -1.9 -2.5 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_3156 -1.8 -4.1 POSSIBLE MEMBRANE PROTEIN compare
Pf6N2E2_2988 -1.8 -5.0 Putative NADPH-quinone reductase (modulator of drug activity B) compare
Pf6N2E2_4372 -1.8 -4.9 FIG00460773: hypothetical protein compare
Pf6N2E2_1271 -1.8 -11.4 Acriflavin resistance plasma membrane protein compare
Pf6N2E2_5155 -1.8 -3.2 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_4480 -1.8 -9.1 Xaa-Pro aminopeptidase (EC 3.4.11.9) compare
Pf6N2E2_5944 -1.8 -4.1 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) compare
Pf6N2E2_5267 -1.8 -7.6 Sulfate transporter, CysZ-type conserved
Pf6N2E2_2514 -1.7 -4.1 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_4991 -1.7 -6.4 DedA protein compare
Pf6N2E2_1270 -1.7 -9.0 Heavy metal RND efflux outer membrane protein, CzcC family compare
Pf6N2E2_649 -1.7 -2.5 General secretion pathway protein L compare
Pf6N2E2_4888 -1.7 -11.7 Excinuclease ABC subunit A compare
Pf6N2E2_2318 -1.6 -7.3 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_4159 -1.6 -4.7 Cytochrome c4 compare
Pf6N2E2_4272 -1.6 -3.3 putative membrane protein compare
Pf6N2E2_4273 -1.6 -5.9 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_5160 -1.6 -1.7 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_4540 -1.6 -2.1 hypothetical protein compare
Pf6N2E2_3786 -1.6 -2.6 Twin-arginine translocation protein TatC compare
Pf6N2E2_1273 -1.6 -3.6 Probable RND efflux membrane fusion protein compare
Pf6N2E2_2707 -1.6 -3.7 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_292 -1.6 -6.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf6N2E2_3505 -1.6 -1.6 Translation initiation factor SUI1-related protein compare
Pf6N2E2_2474 -1.6 -7.9 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_5420 -1.5 -6.0 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
Pf6N2E2_3792 -1.5 -5.7 Glucans biosynthesis protein G precursor compare
Pf6N2E2_3257 -1.5 -4.0 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_1272 -1.5 -9.0 Acriflavin resistance plasma membrane protein compare
Pf6N2E2_4057 -1.5 -0.9 lipoprotein, putative compare
Pf6N2E2_2681 -1.5 -2.9 3-phosphoglycerate kinase compare
Pf6N2E2_43 -1.5 -3.8 Histidine permease YuiF compare
Pf6N2E2_5714 -1.4 -1.6 Flavoprotein WrbA compare
Pf6N2E2_4071 -1.4 -3.0 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_1081 -1.4 -1.9 probable membrane protein YPO3302 compare
Pf6N2E2_5428 -1.4 -4.8 DNA recombination and repair protein RecO compare
Pf6N2E2_4886 -1.4 -9.0 Catalase (EC 1.11.1.6) compare
Pf6N2E2_122 -1.4 -2.4 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_5594 -1.4 -6.4 Endonuclease III (EC 4.2.99.18) compare
Pf6N2E2_2344 -1.4 -6.0 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_464 -1.3 -1.6 Sensory histidine kinase QseC compare
Pf6N2E2_4659 -1.3 -3.9 Lipoprotein, putative compare
Pf6N2E2_5406 -1.3 -1.8 FIG00958224: hypothetical protein compare
Pf6N2E2_2469 -1.3 -2.9 hypothetical protein compare
Pf6N2E2_4233 -1.3 -9.0 sulfatase domain protein, putative compare
Pf6N2E2_2919 -1.3 -2.3 FIG00955830: hypothetical protein compare
Pf6N2E2_4599 -1.2 -2.2 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_582 -1.2 -6.3 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) compare
Pf6N2E2_2646 -1.2 -1.9 FIG00953416: hypothetical protein compare
Pf6N2E2_423 -1.2 -2.0 Putative phosphatase YfbT compare
Pf6N2E2_5007 -1.2 -6.4 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_5632 -1.2 -2.2 Aromatic amino acid transport protein AroP compare
Pf6N2E2_2123 -1.2 -3.0 hypothetical protein compare
Pf6N2E2_291 -1.2 -3.9 ATP-dependent Clp protease adaptor protein ClpS compare
Pf6N2E2_2934 -1.2 -3.7 lipoprotein, putative compare
Pf6N2E2_52 -1.2 -7.6 Excinuclease ABC subunit B compare
Pf6N2E2_2018 -1.2 -2.3 hypothetical protein compare
Pf6N2E2_3155 -1.2 -3.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_603 -1.2 -4.3 FIG00953934: hypothetical protein compare
Pf6N2E2_441 -1.2 -2.7 FIG00958773: hypothetical protein compare
Pf6N2E2_2933 -1.2 -1.6 hypothetical protein compare
Pf6N2E2_2472 -1.1 -1.8 hypothetical protein compare
Pf6N2E2_2201 -1.1 -4.2 Transmembrane regulator protein PrtR compare
Pf6N2E2_2124 -1.1 -1.5 Mg(2+) transport ATPase protein C compare
Pf6N2E2_4367 -1.1 -2.4 hypothetical protein compare
Pf6N2E2_3504 -1.1 -6.0 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_2025 -1.1 -6.0 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
Pf6N2E2_4418 -1.1 -0.9 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_1705 -1.1 -1.5 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_3258 -1.1 -3.6 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_4969 -1.1 -1.0 hypothetical protein compare
Pf6N2E2_2865 -1.1 -7.5 Gluconate utilization system Gnt-I transcriptional repressor compare
Pf6N2E2_6082 -1.1 -2.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3132 -1.1 -2.3 FIG00954548: hypothetical protein compare
Pf6N2E2_2725 -1.1 -7.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_4592 -1.1 -5.0 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific compare
Pf6N2E2_5793 -1.1 -5.0 Aspartyl aminopeptidase compare
Pf6N2E2_2471 -1.1 -5.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_987 -1.1 -1.7 hypothetical protein compare
Pf6N2E2_4044 -1.1 -2.3 Holliday junction resolvasome, helicase subunit compare
Pf6N2E2_922 -1.1 -1.8 FIG00794167: hypothetical protein compare
Pf6N2E2_3260 -1.1 -3.2 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_3529 -1.1 -1.8 Toxin A compare
Pf6N2E2_4061 -1.1 -2.4 Rubredoxin compare
Pf6N2E2_2310 -1.1 -5.5 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare


Specific Phenotypes

For 24 genes in this experiment

For stress Choline Lysine in Pseudomonas fluorescens FW300-N2E2

For stress Choline Lysine across organisms