Experiment set3IT080 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Tetracycline hydrochloride 0.0008 mg/ml

200 most important genes:

  gene name fitness t score description  
AO353_22685 -4.1 -2.8 peroxidase compare
AO353_17295 -3.5 -18.4 multidrug transporter compare
AO353_17290 -3.5 -6.7 multidrug transporter compare
AO353_26835 -3.5 -4.7 transcriptional regulator compare
AO353_14775 -3.2 -7.1 hypothetical protein compare
AO353_17300 -3.2 -7.6 antibiotic transporter compare
AO353_12105 -3.1 -6.5 peptidase S41 compare
AO353_09060 -2.6 -3.5 hypothetical protein compare
AO353_03615 -2.6 -3.5 cold-shock protein compare
AO353_12500 -2.6 -2.5 shikimate kinase compare
AO353_09315 -2.5 -11.1 LysR family transcriptional regulator compare
AO353_08265 -2.5 -6.4 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_09275 -2.5 -4.1 DNA-directed RNA polymerase subunit omega compare
AO353_00495 -2.4 -3.2 DNA topoisomerase I compare
AO353_09040 -2.4 -2.8 diaminopimelate epimerase compare
AO353_16915 -2.4 -10.9 hypothetical protein compare
AO353_02570 -2.3 -4.5 hypothetical protein compare
AO353_12115 -2.3 -2.7 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_15900 -2.2 -3.0 GTP-binding protein compare
AO353_21625 -2.2 -3.3 Fe/S biogenesis protein NfuA compare
AO353_13100 -2.2 -2.0 GTPase RsgA compare
AO353_09720 -2.1 -2.4 hypothetical protein compare
AO353_27090 -2.0 -3.2 hypothetical protein compare
AO353_07315 -2.0 -2.9 rRNA methyltransferase compare
AO353_13225 -1.9 -3.6 50S ribosomal protein L9 compare
AO353_03595 -1.9 -4.3 hypothetical protein compare
AO353_02250 -1.9 -3.7 chorismate synthase compare
AO353_06040 -1.9 -3.5 exodeoxyribonuclease V subunit alpha compare
AO353_13200 -1.9 -10.5 exoribonuclease R compare
AO353_09950 -1.9 -5.1 aspartate ammonia-lyase compare
AO353_03590 -1.9 -4.0 crossover junction endodeoxyribonuclease RuvC compare
AO353_06865 -1.9 -12.8 catalase compare
AO353_09240 -1.8 -3.8 acetylglutamate kinase compare
AO353_25990 -1.8 -6.8 aspartyl beta-hydroxylase compare
AO353_20170 -1.8 -5.2 trigger factor compare
AO353_05625 -1.8 -2.1 transcription elongation factor GreA compare
AO353_03420 -1.8 -5.3 phosphogluconate dehydratase compare
AO353_13220 -1.8 -6.7 hypothetical protein compare
AO353_02440 -1.8 -10.5 peptidase S41 compare
AO353_00825 -1.7 -4.4 porin compare
AO353_01215 -1.7 -9.2 hypothetical protein compare
AO353_01220 -1.7 -2.2 hypothetical protein compare
AO353_03585 -1.7 -3.7 ATP-dependent DNA helicase RuvA compare
AO353_06415 -1.7 -4.8 hypothetical protein compare
AO353_05420 -1.7 -2.2 peptide chain release factor 3 compare
AO353_03360 -1.6 -6.9 glucose-6-phosphate dehydrogenase compare
AO353_23730 -1.6 -3.1 hypothetical protein compare
AO353_09660 -1.5 -1.9 hypothetical protein compare
AO353_04365 -1.5 -5.1 recombinase XerD compare
AO353_06710 -1.5 -1.9 riboflavin synthase subunit alpha compare
AO353_09905 -1.5 -7.8 phosphate-binding protein compare
AO353_06045 -1.5 -6.2 exodeoxyribonuclease V subunit beta compare
AO353_16940 -1.5 -5.2 deoxycytidine triphosphate deaminase compare
AO353_18555 -1.5 -9.8 aromatic amino acid transporter compare
AO353_04565 -1.5 -5.3 nucleoid-associated protein compare
AO353_11165 -1.5 -8.1 hypothetical protein compare
AO353_10950 -1.4 -7.8 thiol:disulfide interchange protein compare
AO353_09890 -1.4 -4.5 phosphate ABC transporter ATP-binding protein compare
AO353_10930 -1.4 -6.7 DNA polymerase I compare
AO353_06050 -1.4 -5.7 exodeoxyribonuclease V subunit gamma compare
AO353_19020 -1.4 -2.6 hypothetical protein compare
AO353_12145 -1.4 -4.0 nitrogen regulation protein NR(I) compare
AO353_11530 -1.4 -7.0 diguanylate cyclase compare
AO353_08885 -1.3 -9.8 polyphosphate kinase compare
AO353_04355 -1.3 -2.1 homoserine dehydrogenase compare
AO353_18170 -1.3 -6.3 aspartyl beta-hydroxylase compare
AO353_09320 -1.3 -6.9 ATP-dependent DNA helicase RecG compare
AO353_05150 -1.3 -4.2 ABC transporter ATP-binding protein compare
AO353_18960 -1.3 -1.6 terminase compare
AO353_12015 -1.3 -2.6 antitoxin compare
AO353_09000 -1.3 -4.4 argininosuccinate lyase compare
AO353_23720 -1.3 -3.5 BatB protein compare
AO353_13420 -1.3 -2.2 hypothetical protein compare
AO353_04490 -1.3 -7.1 murein transglycosylase compare
AO353_10670 -1.3 -5.6 shikimate dehydrogenase compare
AO353_21935 -1.2 -2.2 nitrite reductase compare
AO353_01685 -1.2 -1.9 hypothetical protein compare
AO353_27855 -1.2 -2.3 MarR family transcriptional regulator compare
AO353_02070 -1.2 -4.6 prephenate dehydratase compare
AO353_11730 -1.2 -6.8 glutamate--cysteine ligase compare
AO353_25505 -1.2 -7.1 4-amino-4-deoxy-L-arabinose transferase compare
AO353_07155 -1.2 -5.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_16805 -1.2 -4.5 recombinase RecA compare
AO353_00660 -1.2 -2.6 transcriptional regulator compare
AO353_11770 -1.2 -1.9 molecular chaperone Hsp33 compare
AO353_00310 -1.2 -6.4 transaldolase compare
AO353_29215 -1.2 -2.2 alpha/beta hydrolase compare
AO353_23590 -1.1 -2.1 ArsR family transcriptional regulator compare
AO353_04970 -1.1 -2.3 cell division protein DedD compare
AO353_09250 -1.1 -2.6 exodeoxyribonuclease III compare
AO353_09045 -1.1 -2.1 hypothetical protein compare
AO353_05130 -1.1 -1.6 anti-anti-sigma factor compare
AO353_02815 -1.1 -3.9 transcriptional regulator compare
AO353_26335 -1.1 -2.3 hypothetical protein compare
AO353_14370 -1.1 -5.2 glucose-6-phosphate isomerase compare
AO353_18780 -1.1 -5.1 cobyrinic acid a,c-diamide synthase compare
AO353_19360 -1.1 -1.9 peroxiredoxin compare
AO353_12470 -1.1 -8.3 peptidase compare
AO353_03670 -1.1 -3.6 ornithine acetyltransferase compare
AO353_26945 -1.1 -2.0 transcriptional regulator compare
AO353_19145 -1.1 -3.5 protease HtpX compare
AO353_09050 -1.1 -3.0 recombinase XerC compare
AO353_02480 -1.1 -6.1 peptidylprolyl isomerase compare
AO353_05135 -1.1 -6.1 toluene tolerance protein compare
AO353_26195 -1.1 -2.5 hypothetical protein compare
AO353_25530 -1.1 -4.2 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase compare
AO353_13300 -1.1 -2.2 LOG family protein compare
AO353_16530 -1.0 -1.8 ribonuclease HII compare
AO353_08455 -1.0 -5.1 hypothetical protein compare
AO353_08650 -1.0 -3.1 aliphatic sulfonate ABC transporter ATP-binding protein compare
AO353_15905 -1.0 -4.7 outer membrane protein assembly factor BamB compare
AO353_03795 -1.0 -3.2 fumarate hydratase compare
AO353_27695 -1.0 -5.4 isocitrate dehydrogenase compare
AO353_13720 -1.0 -7.2 arginine decarboxylase compare
AO353_09260 -1.0 -4.6 ribonuclease PH compare
AO353_10780 -1.0 -1.2 DNA-binding protein compare
AO353_23725 -1.0 -3.6 hypothetical protein compare
AO353_05325 -1.0 -3.8 GntR family transcriptional regulator compare
AO353_09135 -1.0 -1.2 cytochrome C compare
AO353_15050 -1.0 -2.6 nitrate transport permease nrtB compare
AO353_27500 -1.0 -1.8 hypothetical protein compare
AO353_17855 -0.9 -2.2 ribonuclease D compare
AO353_15185 -0.9 -3.3 ATPase compare
AO353_06495 -0.9 -3.2 gamma-glutamyl phosphate reductase compare
AO353_21455 -0.9 -1.7 cation:proton antiporter compare
AO353_06530 -0.9 -6.6 peptidase C13 compare
AO353_20565 -0.9 -1.6 tRNA-Ala compare
AO353_18505 -0.9 -1.7 translation initiation factor 2 compare
AO353_12580 -0.9 -1.6 type II secretory protein PulK compare
AO353_07645 -0.9 -1.3 sarcosine oxidase subunit gamma compare
AO353_09900 -0.9 -5.9 phosphate ABC transporter permease compare
AO353_08260 -0.9 -5.5 peptidase M16 compare
AO353_03520 -0.9 -2.3 hypothetical protein compare
AO353_02995 -0.8 -4.4 succinylglutamate desuccinylase compare
AO353_02810 -0.8 -4.3 histidine kinase compare
AO353_03580 -0.8 -2.4 ATP-dependent DNA helicase RuvB compare
AO353_20925 -0.8 -1.4 hypothetical protein compare
AO353_16425 -0.8 -1.6 Fe-S metabolism protein SufE compare
AO353_20200 -0.8 -2.5 peptidylprolyl isomerase compare
AO353_09860 -0.8 -5.5 histidine kinase compare
AO353_17155 -0.8 -6.1 RNA polymerase-associated protein RapA compare
AO353_13040 -0.8 -4.4 esterase compare
AO353_24440 -0.8 -1.9 reactive intermediate/imine deaminase compare
AO353_18890 -0.8 -2.9 cytochrome C compare
AO353_26520 -0.8 -2.2 TetR family transcriptional regulator compare
AO353_10995 -0.8 -5.2 hypothetical protein compare
AO353_00515 -0.8 -2.3 hypothetical protein compare
AO353_16375 -0.8 -2.1 hypothetical protein compare
AO353_23735 -0.8 -4.3 AAA family ATPase compare
AO353_07625 -0.8 -2.7 RNA polymerase subunit sigma-70 compare
AO353_24275 -0.8 -1.9 transcriptional regulator compare
AO353_15560 -0.8 -2.4 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
AO353_15555 -0.8 -2.6 fumarylacetoacetase compare
AO353_07325 -0.8 -1.3 diadenosine tetraphosphatase compare
AO353_06585 -0.8 -3.7 hypothetical protein compare
AO353_08765 -0.8 -2.9 hypothetical protein compare
AO353_17435 -0.8 -3.6 hypothetical protein compare
AO353_23400 -0.8 -1.8 hypothetical protein compare
AO353_03830 -0.8 -1.5 antibiotic biosynthesis monooxygenase compare
AO353_27130 -0.8 -1.7 hypothetical protein compare
AO353_10070 -0.8 -4.7 cell wall assembly protein compare
AO353_07465 -0.8 -1.9 addiction module toxin RelE compare
AO353_07515 -0.8 -1.4 transporter compare
AO353_15725 -0.8 -2.7 hypothetical protein compare
AO353_08165 -0.8 -1.6 pyrroline-5-carboxylate reductase compare
AO353_16495 -0.8 -2.5 zinc metallopeptidase RseP compare
AO353_19030 -0.8 -4.1 phospho-2-dehydro-3-deoxyheptonate aldolase compare
AO353_14590 -0.8 -1.4 serine kinase/phosphatase compare
AO353_00330 -0.7 -4.2 hypothetical protein compare
AO353_06455 -0.7 -1.6 D-alanyl-D-alanine carboxypeptidase compare
AO353_15395 -0.7 -2.2 transcriptional regulator compare
AO353_07460 -0.7 -2.0 DNA-binding protein compare
AO353_18510 -0.7 -1.7 hypothetical protein compare
AO353_13415 -0.7 -3.4 TetR family transcriptional regulator compare
AO353_17175 -0.7 -1.6 beta-ketoadipyl CoA thiolase compare
AO353_24130 -0.7 -2.1 hypothetical protein compare
AO353_25570 -0.7 -4.7 glycosyltransferase compare
AO353_08855 -0.7 -2.6 GntR family transcriptional regulator compare
AO353_12130 -0.7 -2.6 preprotein translocase subunit SecB compare
AO353_08115 -0.7 -3.1 energy transducer TonB compare
AO353_12945 -0.7 -3.8 toluene tolerance protein compare
AO353_07725 -0.7 -4.3 hypothetical protein compare
AO353_12535 -0.7 -1.9 hypothetical protein compare
AO353_27650 -0.7 -2.6 cell division protein FtsK compare
AO353_00860 -0.7 -2.4 EstX protein compare
AO353_03370 -0.7 -2.0 aldose epimerase compare
AO353_25550 -0.7 -3.4 4-amino-4-deoxy-L-arabinose transferase compare
AO353_15290 -0.7 -3.9 methyltransferase compare
AO353_27525 -0.7 -1.9 AraC family transcriptional regulator compare
AO353_27665 -0.7 -3.8 arginyl-tRNA-protein transferase compare
AO353_07355 -0.7 -2.9 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_09065 -0.7 -2.9 hypothetical protein compare
AO353_04190 -0.7 -1.1 glycerol-3-phosphate dehydrogenase compare
AO353_04360 -0.7 -3.7 protein-disulfide isomerase compare
AO353_00150 -0.7 -2.0 hypothetical protein compare
AO353_16600 -0.7 -4.0 stationary phase survival protein SurE compare
AO353_16070 -0.6 -2.0 PadR family transcriptional regulator compare
AO353_12915 -0.6 -3.4 carbamoyltransferase compare
AO353_23860 -0.6 -2.1 xanthine permease XanP compare
AO353_28110 -0.6 -2.7 TetR family transcriptional regulator compare


Specific Phenotypes

For 2 genes in this experiment

For stress Tetracycline hydrochloride in Pseudomonas fluorescens FW300-N2E3

For stress Tetracycline hydrochloride across organisms