Experiment set3IT080 for Methanococcus maripaludis S2

Compare to:

Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 Vitamin & Casamino Acid FREE

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS01370 +1.8 14.1 acetate--CoA ligase family protein compare
MMP_RS00675 +1.2 2.0 nitroreductase family protein compare
MMP_RS01650 +0.9 1.2 sulfurtransferase TusA family protein compare
MMP_RS03300 +0.8 1.2 TOBE domain-containing protein compare
MMP_RS03465 +0.7 1.4 adenine phosphoribosyltransferase compare
MMP_RS01865 +0.6 1.7 GPR1/FUN34/YaaH family transporter compare
MMP_RS02175 +0.6 0.7 DUF1611 domain-containing protein compare
MMP_RS07125 +0.6 2.4 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS06525 +0.5 1.1 YciI family protein compare
MMP_RS05975 +0.5 1.4 hypothetical protein compare
MMP_RS02370 +0.5 2.4 NifB/NifX family molybdenum-iron cluster-binding protein compare
MMP_RS06940 +0.5 1.8 polyprenyl diphosphate synthase compare
MMP_RS07620 +0.5 2.3 energy-coupling factor ABC transporter substrate-binding protein compare
MMP_RS07895 +0.5 2.0 cytochrome c compare
MMP_RS05355 +0.5 0.8 hypothetical protein compare
MMP_RS00125 +0.5 1.1 DUF2798 domain-containing protein compare
MMP_RS08455 +0.5 2.1 multiprotein bridging factor aMBF1 compare
MMP_RS07840 +0.5 2.2 ribonuclease III compare
MMP_RS05950 +0.5 3.3 nickel-dependent hydrogenase large subunit compare
MMP_RS03340 +0.5 0.6 ABC transporter ATP-binding protein compare
MMP_RS03440 +0.5 0.9 MoaD/ThiS family protein compare
MMP_RS03390 +0.4 2.7 malate dehydrogenase compare
MMP_RS08500 +0.4 2.9 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS01630 +0.4 2.2 N-glycosylase/DNA lyase compare
MMP_RS07120 +0.4 2.8 coenzyme F420 hydrogenase subunit alpha compare
MMP_RS03215 +0.4 3.2 MBL fold metallo-hydrolase compare
MMP_RS01570 +0.4 1.0 hypothetical protein compare
MMP_RS08775 +0.4 1.9 methanogenesis marker 9 domain-containing protein compare
MMP_RS08340 +0.4 2.2 4Fe-4S binding protein compare
MMP_RS06860 +0.4 1.2 4Fe-4S binding protein compare
MMP_RS05790 +0.4 2.4 HDIG domain-containing protein compare
MMP_RS02605 +0.4 0.5 MotA/TolQ/ExbB proton channel family protein compare
MMP_RS05865 +0.4 1.9 hypothetical protein compare
MMP_RS03220 +0.4 1.5 RNA 2' 3'-cyclic phosphodiesterase compare
MMP_RS06575 +0.4 2.0 fluoride efflux transporter CrcB compare
MMP_RS02490 +0.4 1.6 hypothetical protein compare
MMP_RS08345 +0.4 2.7 4Fe-4S binding protein compare
MMP_RS09030 +0.4 2.3 hypothetical protein compare
MMP_RS07115 +0.4 2.5 MBL fold metallo-hydrolase compare
MMP_RS02295 +0.4 2.9 TatD family hydrolase compare
MMP_RS03385 +0.4 0.6 cation diffusion facilitator family transporter compare
MMP_RS06610 +0.4 1.8 DUF2334 domain-containing protein compare
MMP_RS07130 +0.4 2.7 coenzyme F420 hydrogenase subunit gamma compare
MMP_RS08615 +0.3 0.9 flagellar protein G compare
MMP_RS08360 +0.3 1.5 hypothetical protein compare
MMP_RS02805 +0.3 0.7 HEPN domain-containing protein compare
MMP_RS06765 +0.3 2.0 flap endonuclease-1 compare
MMP_RS01885 +0.3 1.8 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS06305 +0.3 2.8 transporter substrate-binding domain-containing protein compare
MMP_RS07100 +0.3 2.8 hypothetical protein compare
MMP_RS05985 +0.3 1.6 hypothetical protein compare
MMP_RS03895 +0.3 1.4 hypothetical protein compare
MMP_RS00665 +0.3 1.8 hypothetical protein compare
MMP_RS09025 +0.3 0.6 hypothetical protein compare
MMP_RS05275 +0.3 2.3 AI-2E family transporter compare
MMP_RS08090 +0.3 1.0 hypothetical protein compare
MMP_RS08080 +0.3 2.4 YchF/TatD family DNA exonuclease compare
MMP_RS06655 +0.3 2.5 glycoside hydrolase family 15 protein compare
MMP_RS02045 +0.3 0.7 tRNA-Met compare
MMP_RS08835 +0.3 2.1 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein compare
MMP_RS07435 +0.3 0.9 GMP synthase subunit A compare
MMP_RS00810 +0.3 1.3 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS01150 +0.3 1.2 aldo/keto reductase compare
MMP_RS05490 +0.3 1.5 IMPACT family protein compare
MMP_RS05525 +0.3 1.8 calcium/sodium antiporter compare
MMP_RS08280 +0.3 1.2 proteasome assembly chaperone family protein compare
MMP_RS02410 +0.3 0.9 ABC transporter substrate-binding protein compare
MMP_RS05140 +0.3 1.4 helix-turn-helix transcriptional regulator compare
MMP_RS01095 +0.3 1.8 iron ABC transporter permease compare
MMP_RS04480 +0.3 2.5 lysine 2 3-aminomutase compare
MMP_RS08365 +0.3 1.2 energy conserving hydrogenase EhbF compare
MMP_RS08930 +0.3 0.9 hypothetical protein compare
MMP_RS06005 +0.3 1.8 heavy-metal-associated domain-containing protein compare
MMP_RS08265 +0.3 1.4 rubrerythrin compare
MMP_RS00955 +0.3 2.0 coenzyme gamma-F420-2:alpha-L-glutamate ligase compare
MMP_RS07085 +0.3 1.9 ribonuclease HII compare
MMP_RS04050 +0.3 1.2 hypothetical protein compare
MMP_RS03965 +0.3 0.9 hypothetical protein compare
MMP_RS07155 +0.3 2.1 MFS transporter compare
MMP_RS02705 +0.3 1.7 formylmethanofuran dehydrogenase subunit B compare
MMP_RS03280 +0.3 1.8 pyridoxamine 5'-phosphate oxidase family protein compare
MMP_RS05990 +0.3 1.4 DsrE family protein compare
MMP_RS02645 +0.3 1.9 ArsR family transcriptional regulator compare
MMP_RS00285 +0.3 1.5 TIGR04013 family B12-binding domain/radical SAM domain-containing protein compare
MMP_RS06190 +0.3 1.7 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO compare
MMP_RS07135 +0.3 1.7 coenzyme F420 hydrogenase subunit beta compare
MMP_RS02020 +0.3 1.2 gamma-glutamylcyclotransferase compare
MMP_RS01275 +0.2 1.6 class III signal peptide-containing protein compare
MMP_RS05435 +0.2 1.1 5'/3'-nucleotidase SurE compare
MMP_RS08160 +0.2 1.4 EamA family transporter compare
MMP_RS06965 +0.2 1.6 TIGR04014 family B12-binding domain/radical SAM domain-containing protein compare
MMP_RS06365 +0.2 0.9 hypothetical protein compare
MMP_RS05175 +0.2 1.7 hypothetical protein compare
MMP_RS07910 +0.2 1.4 NAD(P)H-hydrate dehydratase compare
MMP_RS07715 +0.2 1.6 YfcE family phosphodiesterase compare
MMP_RS08980 +0.2 1.7 hypothetical protein compare
MMP_RS01435 +0.2 0.9 DMT family transporter compare
MMP_RS01970 +0.2 1.8 TIGR04279 domain-containing protein compare
MMP_RS01100 +0.2 0.5 ABC transporter ATP-binding protein compare
MMP_RS08620 +0.2 1.5 flagellar accessory protein FlaH compare
MMP_RS03575 +0.2 1.8 ECF transporter S component compare
MMP_RS00865 +0.2 1.5 SLC13 family permease compare
MMP_RS02840 +0.2 1.2 DUF123 domain-containing protein compare
MMP_RS00990 +0.2 1.2 hypothetical protein compare
MMP_RS07795 +0.2 1.8 site-2 protease family protein compare
MMP_RS08275 +0.2 1.8 hypothetical protein compare
MMP_RS06500 +0.2 1.8 ATP-binding protein compare
MMP_RS00905 +0.2 1.3 phenylacetate--CoA ligase compare
MMP_RS06490 +0.2 1.0 hypothetical protein compare
MMP_RS08380 +0.2 1.6 phosphatase PAP2 family protein compare
MMP_RS08260 +0.2 1.2 DUF99 family protein compare
MMP_RS06585 +0.2 0.6 DMT family protein compare
MMP_RS06905 +0.2 0.9 hypothetical protein compare
MMP_RS00660 +0.2 1.4 alkaline phosphatase family protein compare
MMP_RS00535 +0.2 0.7 TIGR00375 family protein compare
MMP_RS02995 +0.2 1.1 acyl-CoA thioesterase compare
MMP_RS00770 +0.2 1.3 hypothetical protein compare
MMP_RS06665 +0.2 1.7 glycogen/starch synthase compare
MMP_RS08355 +0.2 0.9 Na(+)/H(+) antiporter subunit B compare
MMP_RS08480 +0.2 1.8 molybdate ABC transporter substrate-binding protein compare
MMP_RS07775 +0.2 1.2 alanine dehydrogenase compare
MMP_RS08235 +0.2 1.5 hypothetical protein compare
MMP_RS05470 +0.2 1.4 DUF523 and DUF1722 domain-containing protein compare
MMP_RS06910 +0.2 1.4 RlmF-related methyltransferase compare
MMP_RS04195 +0.2 0.7 flavodoxin compare
MMP_RS02695 +0.2 1.5 formylmethanofuran dehydrogenase subunit A compare
MMP_RS02940 +0.2 1.6 TatD family hydrolase compare
MMP_RS08430 +0.2 1.2 HAD family hydrolase compare
MMP_RS00530 +0.2 1.0 tRNA pseudouridine(54/55) synthase Pus10 compare
MMP_RS06770 +0.2 1.3 DHH family phosphoesterase compare
MMP_RS03770 +0.2 1.5 hydroxylamine reductase compare
MMP_RS06300 +0.2 1.4 ABC transporter substrate-binding protein compare
MMP_RS04725 +0.2 1.6 hypothetical protein compare
MMP_RS06430 +0.2 1.3 6-carboxytetrahydropterin synthase QueD compare
MMP_RS07970 +0.2 0.9 hypothetical protein compare
MMP_RS05935 +0.2 1.7 uroporphyrinogen decarboxylase family protein compare
MMP_RS03900 +0.2 1.2 minichromosome maintenance protein MCM compare
MMP_RS07770 +0.2 1.4 alanine racemase compare
MMP_RS04410 +0.2 1.2 hypothetical protein compare
MMP_RS03235 +0.2 1.1 tRNA pseudouridine(13) synthase TruD compare
MMP_RS06440 +0.2 1.3 CBS domain-containing protein compare
MMP_RS04060 +0.2 1.1 hypothetical protein compare
MMP_RS00155 +0.2 1.2 heavy metal-binding domain-containing protein compare
MMP_RS05995 +0.2 1.5 FprA family A-type flavoprotein compare
MMP_RS00540 +0.2 1.4 PLP-dependent aminotransferase family protein compare
MMP_RS05535 +0.2 1.3 hypothetical protein compare
MMP_RS01115 +0.2 1.3 molybdopterin molybdotransferase MoeA compare
MMP_RS01090 +0.2 1.2 ABC transporter substrate-binding protein compare
MMP_RS00915 +0.2 0.9 DUF116 domain-containing protein compare
MMP_RS02445 +0.2 1.6 putative DNA binding domain-containing protein compare
MMP_RS04120 +0.2 1.6 hypothetical protein compare
MMP_RS04275 +0.2 1.5 hydrogenase iron-sulfur subunit compare
MMP_RS02815 +0.2 0.7 hypothetical protein compare
MMP_RS03275 +0.2 0.9 TIGR00266 family protein compare
MMP_RS00430 +0.2 1.2 hypothetical protein compare
MMP_RS03870 +0.2 1.0 purine NTPase compare
MMP_RS00385 +0.2 1.4 P-II family nitrogen regulator compare
MMP_RS01430 +0.2 1.4 mechanosensitive ion channel family protein compare
MMP_RS06650 +0.2 1.1 glycoside hydrolase family 57 protein compare
MMP_RS00390 +0.2 1.3 ammonium transporter compare
MMP_RS01550 +0.2 1.2 DUF1624 domain-containing protein compare
MMP_RS00630 +0.2 1.4 ECF transporter S component compare
MMP_RS01870 +0.2 1.4 acyl-CoA dehydratase activase compare
MMP_RS07905 +0.2 0.8 DUF3343 domain-containing protein compare
MMP_RS03790 +0.2 1.3 hypothetical protein compare
MMP_RS02675 +0.2 0.3 hypothetical protein compare
MMP_RS07150 +0.2 1.1 MTH895/ArsE family thioredoxin-like protein compare
MMP_RS04590 +0.2 1.6 hypothetical protein compare
MMP_RS00635 +0.2 0.9 energy-coupling factor transporter transmembrane protein EcfT compare
MMP_RS06560 +0.2 1.2 hypothetical protein compare
MMP_RS08700 +0.2 1.3 hypothetical protein compare
MMP_RS08640 +0.2 1.5 TIM barrel protein compare
MMP_RS07850 +0.2 0.7 prephenate dehydratase compare
MMP_RS01420 +0.2 0.5 hypothetical protein compare
MMP_RS06540 +0.2 0.6 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMP_RS08470 +0.2 1.1 ATP-binding cassette domain-containing protein compare
MMP_RS02650 +0.2 1.1 flavodoxin family protein compare
MMP_RS08335 +0.2 0.7 NADH-quinone oxidoreductase subunit B family protein compare
MMP_RS07985 +0.2 1.5 nitroreductase family protein compare
MMP_RS01875 +0.2 1.1 N-acetyltransferase compare
MMP_RS06320 +0.2 1.3 hypothetical protein compare
MMP_RS00975 +0.2 1.2 HD domain-containing protein compare
MMP_RS07145 +0.2 1.0 AmmeMemoRadiSam system protein B compare
MMP_RS03670 +0.2 0.6 DUF1890 domain-containing protein compare
MMP_RS07805 +0.2 1.0 ABC transporter permease compare
MMP_RS05575 +0.2 1.3 hypothetical protein compare
MMP_RS02790 +0.2 0.3 class III signal peptide-containing protein compare
MMP_RS02770 +0.2 0.4 hypothetical protein compare
MMP_RS01065 +0.2 1.3 alpha/beta hydrolase compare
MMP_RS08610 +0.2 1.3 flagellar protein F compare
MMP_RS03750 +0.2 1.2 ACT domain-containing protein compare
MMP_RS05770 +0.2 1.1 YkgJ family cysteine cluster protein compare
MMP_RS08485 +0.2 1.2 tungstate ABC transporter substrate-binding protein WtpA compare
MMP_RS01135 +0.2 1.3 molybdate ABC transporter substrate-binding protein compare
MMP_RS00380 +0.2 0.9 P-II family nitrogen regulator compare
MMP_RS04595 +0.2 1.0 hypothetical protein compare
MMP_RS06920 +0.2 1.3 AAA family ATPase compare
MMP_RS02720 +0.2 0.7 molybdate ABC transporter substrate-binding protein compare
MMP_RS03765 +0.2 0.8 CopG family ribbon-helix-helix protein compare
MMP_RS02515 +0.2 1.3 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 Sodium acetate across organisms