Experiment set3IT080 for Methanococcus maripaludis JJ

Compare to:

H2 N-free with 10mM Ammonium chloride

200 most important genes:

  gene name fitness t score description  
MMJJ_RS05450 -6.2 -17.7 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMJJ_RS02045 -5.9 -3.4 molybdenum cofactor guanylyltransferase compare
MMJJ_RS01810 -5.8 -2.4 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS03055 -5.7 -3.1 hypothetical protein compare
MMJJ_RS04050 -5.4 -2.3 dihydroneopterin aldolase family protein compare
MMJJ_RS00600 -5.3 -3.1 hydroxymethylbilane synthase compare
MMJJ_RS02035 -5.2 -8.2 4-hydroxy-tetrahydrodipicolinate synthase compare
MMJJ_RS07950 -5.1 -3.2 4Fe-4S binding protein compare
MMJJ_RS03615 -5.1 -3.2 cobalt-precorrin-8 methylmutase compare
MMJJ_RS09375 -5.1 -2.1 hypothetical protein compare
MMJJ_RS06625 -4.8 -2.3 pyruvate synthase subunit PorB compare
MMJJ_RS05445 -4.8 -2.3 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS05995 -4.7 -2.5 ATP-binding cassette domain-containing protein compare
MMJJ_RS01750 -4.7 -2.8 ferrous iron transport protein A compare
MMJJ_RS03620 -4.7 -6.4 DUF2097 domain-containing protein compare
MMJJ_RS04485 -4.6 -11.1 riboflavin synthase compare
MMJJ_RS07720 -4.6 -2.2 UPF0058 family protein compare
MMJJ_RS06600 -4.6 -2.4 DUF555 domain-containing protein compare
MMJJ_RS06040 -4.5 -4.3 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS04730 -4.4 -2.8 tyrosine decarboxylase MfnA compare
MMJJ_RS04200 -4.4 -8.1 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS00570 -4.4 -2.4 ribonuclease P compare
MMJJ_RS03125 -4.3 -4.2 GMC oxidoreductase compare
MMJJ_RS00270 -4.3 -3.9 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS00275 -4.3 -3.0 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS03840 -4.3 -2.9 DHH family phosphoesterase compare
MMJJ_RS07380 -4.2 -11.2 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS02275 -4.2 -6.0 nucleotidyltransferase domain-containing protein compare
MMJJ_RS06485 -4.2 -2.8 phosphoglycerate kinase compare
MMJJ_RS06490 -4.2 -2.6 methanogenesis marker 2 protein compare
MMJJ_RS03820 -4.2 -4.0 hydrogenase formation protein HypD compare
MMJJ_RS01475 -4.2 -2.2 signal recognition particle-docking protein FtsY compare
MMJJ_RS08080 -4.1 -10.8 TIGR00300 family protein compare
MMJJ_RS05575 -4.1 -5.2 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS01415 -4.1 -3.2 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS07705 -4.0 -3.9 GTP-binding protein EngB compare
MMJJ_RS03670 -4.0 -6.1 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS06155 -4.0 -6.6 phosphatidylglycerophosphatase A compare
MMJJ_RS09175 -3.9 -1.3 anthranilate synthase component I compare
MMJJ_RS04475 -3.9 -4.9 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS03815 -3.9 -2.5 nascent polypeptide-associated complex protein compare
MMJJ_RS00355 -3.9 -3.4 ribonuclease P protein component 4 compare
MMJJ_RS07785 -3.9 -3.2 fumarate reductase subunit A compare
MMJJ_RS05950 -3.9 -3.7 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS08035 -3.9 -8.2 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS09190 -3.9 -2.2 tryptophan synthase subunit beta compare
MMJJ_RS03580 -3.8 -3.9 TIGR00303 family protein compare
MMJJ_RS04995 -3.8 -6.8 Tfx family DNA-binding protein compare
MMJJ_RS06250 -3.7 -2.4 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS04800 -3.7 -7.5 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS07980 -3.7 -14.8 biotin synthase BioB compare
MMJJ_RS03005 -3.7 -4.4 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS04155 -3.7 -8.2 hypothetical protein compare
MMJJ_RS05070 -3.7 -2.5 DNA primase catalytic subunit PriS compare
MMJJ_RS08155 -3.7 -4.4 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS03110 -3.7 -4.6 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS00645 -3.6 -14.0 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS04685 -3.6 -11.1 carbamoyltransferase HypF compare
MMJJ_RS00205 -3.6 -5.5 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS05225 -3.6 -1.2 Gar1/Naf1 family protein compare
MMJJ_RS08625 -3.6 -7.6 magnesium/cobalt transporter CorA compare
MMJJ_RS05620 -3.6 -4.3 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS01755 -3.6 -2.2 ferrous iron transport protein B compare
MMJJ_RS04700 -3.6 -6.7 deoxyhypusine synthase compare
MMJJ_RS06840 -3.6 -4.2 nickel-dependent hydrogenase large subunit compare
MMJJ_RS05595 -3.6 -3.6 hypothetical protein compare
MMJJ_RS06725 -3.5 -15.8 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS04520 -3.5 -7.8 coenzyme F430 synthase compare
MMJJ_RS06270 -3.5 -9.7 dethiobiotin synthase compare
MMJJ_RS02090 -3.5 -5.7 tyramine--L-glutamate ligase compare
MMJJ_RS08095 -3.5 -5.3 cobyric acid synthase CobQ compare
MMJJ_RS05930 -3.5 -2.5 cell division protein SepF compare
MMJJ_RS08320 -3.5 -2.9 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS00450 -3.5 -2.1 DUF126 domain-containing protein compare
MMJJ_RS07170 -3.4 -2.4 pyridoxal phosphate-dependent aminotransferase compare
MMJJ_RS08330 -3.4 -4.1 SufD family Fe-S cluster assembly protein compare
MMJJ_RS06750 -3.4 -2.4 homoaconitase large subunit compare
MMJJ_RS02200 -3.3 -12.1 chorismate pyruvate-lyase family protein compare
MMJJ_RS01600 -3.3 -3.3 radical SAM protein compare
MMJJ_RS04110 -3.3 -6.5 hypothetical protein compare
MMJJ_RS04790 -3.3 -4.7 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS00345 -3.3 -11.5 4-hydroxy-tetrahydrodipicolinate reductase compare
MMJJ_RS03660 -3.3 -4.8 DUF447 family protein compare
MMJJ_RS00425 -3.3 -4.2 hypothetical protein compare
MMJJ_RS03760 -3.3 -3.7 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS01935 -3.2 -4.6 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS05330 -3.2 -2.6 DNA polymerase II large subunit compare
MMJJ_RS03060 -3.2 -4.0 methanogenesis marker 7 protein compare
MMJJ_RS06510 -3.2 -3.0 LL-diaminopimelate aminotransferase compare
MMJJ_RS08870 -3.2 -1.3 2-isopropylmalate synthase compare
MMJJ_RS01690 -3.2 -3.7 methanogenesis marker 12 protein compare
MMJJ_RS08660 -3.2 -3.7 acetylornithine transaminase compare
MMJJ_RS08535 -3.2 -4.0 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS03270 -3.2 -2.8 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS03190 -3.2 -2.9 phosphopyruvate hydratase compare
MMJJ_RS06805 -3.2 -3.4 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS05935 -3.2 -2.9 Era-like GTP-binding protein compare
MMJJ_RS04145 -3.1 -11.0 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS05810 -3.1 -7.4 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS03585 -3.1 -1.5 methanogenesis marker 6 protein compare
MMJJ_RS06390 -3.1 -2.3 NADPH-dependent F420 reductase compare
MMJJ_RS05610 -3.1 -5.4 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS03895 -3.1 -2.8 hydrogenase expression/formation protein HypE compare
MMJJ_RS08340 -3.1 -7.3 archaeoflavoprotein AfpA compare
MMJJ_RS05490 -3.1 -3.3 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS00125 -3.1 -2.6 KEOPS complex subunit Cgi121 compare
MMJJ_RS00560 -3.0 -4.6 homoisocitrate dehydrogenase compare
MMJJ_RS03865 -3.0 -1.7 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS08850 -3.0 -2.6 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS08250 -3.0 -8.7 hydrogenase maturation peptidase HycI compare
MMJJ_RS03095 -3.0 -2.6 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS06260 -3.0 -8.6 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS08020 -2.9 -9.8 nucleotidyltransferase domain-containing protein compare
MMJJ_RS06705 -2.9 -6.1 bifunctional NADP phosphatase/NAD kinase compare
MMJJ_RS03200 -2.9 -2.5 uroporphyrinogen-III synthase compare
MMJJ_RS06695 -2.9 -3.1 amidohydrolase compare
MMJJ_RS07190 -2.9 -4.8 RtcB family protein compare
MMJJ_RS04980 -2.9 -5.0 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS03830 -2.9 -9.5 CBS domain-containing protein compare
MMJJ_RS06175 -2.9 -2.4 DUF1743 domain-containing protein compare
MMJJ_RS06875 -2.9 -2.6 hypothetical protein compare
MMJJ_RS02920 -2.9 -2.5 30S ribosomal protein S27ae compare
MMJJ_RS03920 -2.9 -12.7 nickel pincer cofactor biosynthesis protein LarC compare
MMJJ_RS07350 -2.9 -3.1 4Fe-4S binding protein compare
MMJJ_RS06930 -2.9 -3.3 type II methionyl aminopeptidase compare
MMJJ_RS07725 -2.8 -6.6 DNA primase DnaG compare
MMJJ_RS06215 -2.8 -6.0 agmatinase compare
MMJJ_RS00210 -2.8 -2.7 DUF530 family protein compare
MMJJ_RS05650 -2.8 -3.9 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS04565 -2.8 -3.9 sirohydrochlorin nickelochelatase compare
MMJJ_RS05720 -2.8 -2.9 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS03875 -2.8 -5.1 CBS domain-containing protein compare
MMJJ_RS03230 -2.8 -4.5 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS08840 -2.7 -5.2 calcium/sodium antiporter compare
MMJJ_RS08055 -2.7 -7.0 methanogenesis marker 14 protein compare
MMJJ_RS07470 -2.7 -2.1 50S ribosome-binding GTPase compare
MMJJ_RS08130 -2.7 -0.9 translation initiation factor IF-2 subunit gamma compare
MMJJ_RS05780 -2.7 -3.3 flagellin compare
MMJJ_RS06185 -2.7 -4.6 cobalamin biosynthesis protein compare
MMJJ_RS04010 -2.7 -6.4 archaeal proteasome endopeptidase complex subunit alpha compare
MMJJ_RS01870 -2.7 -2.2 methanogenesis marker 15 protein compare
MMJJ_RS05295 -2.7 -11.1 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS06240 -2.6 -2.8 dihydropteroate synthase-like protein compare
MMJJ_RS07370 -2.6 -4.4 tRNA 4-thiouridine(8) synthase ThiI compare
MMJJ_RS06225 -2.6 -2.1 adenosylmethionine decarboxylase compare
MMJJ_RS01815 -2.6 -5.3 DUF134 domain-containing protein compare
MMJJ_RS06220 -2.6 -5.0 polyamine aminopropyltransferase compare
MMJJ_RS05065 -2.6 -4.1 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS03150 -2.6 -6.4 2-phospho-L-lactate transferase compare
MMJJ_RS07410 -2.6 -4.1 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS05655 -2.6 -5.9 HisA/HisF family protein compare
MMJJ_RS00580 -2.6 -1.8 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS03170 -2.6 -8.2 DUF5612 domain-containing protein compare
MMJJ_RS04675 -2.6 -7.2 thiamine pyrophosphate-binding protein compare
MMJJ_RS07000 -2.6 -2.0 TrkH family potassium uptake protein compare
MMJJ_RS01345 -2.6 -5.2 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS00215 -2.5 -2.7 CCA tRNA nucleotidyltransferase compare
MMJJ_RS07155 -2.5 -10.9 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS01355 -2.5 -3.7 UDP-N-acetyl-D-mannosamine dehydrogenase compare
MMJJ_RS01360 -2.5 -2.4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS03785 -2.5 -2.8 hypothetical protein compare
MMJJ_RS05415 -2.5 -1.7 hypothetical protein compare
MMJJ_RS07245 -2.5 -5.6 amidohydrolase family protein compare
MMJJ_RS00360 -2.4 -3.1 adenosylhomocysteinase compare
MMJJ_RS04650 -2.4 -6.3 nitrogenase iron protein compare
MMJJ_RS06000 -2.4 -4.5 cation:proton antiporter subunit C compare
MMJJ_RS08230 -2.4 -3.0 ribose-5-phosphate isomerase RpiA compare
MMJJ_RS07360 -2.4 -1.5 TIGR00269 family protein compare
MMJJ_RS00935 -2.4 -9.9 nickel pincer cofactor biosynthesis protein LarB compare
MMJJ_RS05260 -2.4 -4.6 ATP-grasp domain-containing protein compare
MMJJ_RS08620 -2.4 -3.9 DUF373 family protein compare
MMJJ_RS06180 -2.3 -3.0 tryptophan--tRNA ligase compare
MMJJ_RS05710 -2.3 -4.6 single-stranded-DNA-specific exonuclease RecJ compare
MMJJ_RS06655 -2.3 -11.2 transcriptional regulator compare
MMJJ_RS08010 -2.3 -5.9 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS01200 -2.3 -2.9 PRC-barrel domain-containing protein compare
MMJJ_RS04750 -2.3 -8.7 5,10-methenyltetrahydromethanopterin hydrogenase compare
MMJJ_RS06785 -2.3 -6.4 RNA ligase partner protein compare
MMJJ_RS07275 -2.3 -2.8 formate--phosphoribosylaminoimidazolecarboxamide ligase compare
MMJJ_RS01410 -2.3 -5.7 archaeal proteasome endopeptidase complex subunit beta compare
MMJJ_RS04150 -2.3 -2.3 DUF5379 domain-containing protein compare
MMJJ_RS08925 -2.3 -11.9 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS03245 -2.3 -1.7 UMP kinase compare
MMJJ_RS05590 -2.3 -1.9 homoserine dehydrogenase compare
MMJJ_RS05765 -2.3 -1.3 flagellar protein E compare
MMJJ_RS06265 -2.2 -12.1 8-amino-7-oxononanoate synthase compare
MMJJ_RS01350 -2.2 -4.5 sodium:proton antiporter compare
MMJJ_RS08470 -2.2 -2.0 ferredoxin family protein compare
MMJJ_RS08325 -2.2 -2.0 glycosyltransferase family 2 protein compare
MMJJ_RS03065 -2.2 -10.3 CBS domain-containing protein compare
MMJJ_RS07875 -2.2 -2.0 FAD-dependent oxidoreductase compare
MMJJ_RS01880 -2.2 -3.0 RlmE family RNA methyltransferase compare
MMJJ_RS04760 -2.2 -14.9 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMJJ_RS08795 -2.2 -2.8 phosphoglucosamine mutase compare
MMJJ_RS08000 -2.2 -9.9 HesA/MoeB/ThiF family protein compare
MMJJ_RS03295 -2.1 -12.1 PHP domain-containing protein compare
MMJJ_RS06170 -2.1 -8.9 hypothetical protein compare
MMJJ_RS05380 -2.1 -1.3 hypothetical protein compare
MMJJ_RS06650 -2.1 -12.6 cell division protein FtsZ compare
MMJJ_RS03845 -2.1 -4.3 translation initiation factor IF-2 compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in nitrogen source experiments

For nitrogen source Ammonium chloride across organisms