Experiment set3IT080 for Bifidobacterium breve UCC2003

Compare to:

Recovery broth with Ramoplanin 3e-05 mM

200 most important genes:

  gene name fitness t score description  
BBR_RS10255 -6.5 -4.5 chromosomal replication initiator protein DnaA compare
BBR_RS10625 -4.8 -3.3 FHA domain-containing protein compare
BBR_RS12545 -4.7 -4.5 DUF4012 domain-containing protein compare
BBR_RS13805 -4.0 -3.5 hypothetical protein compare
BBR_RS11540 -3.9 -4.6 DUF1727 domain-containing protein compare
BBR_RS15070 -3.6 -5.2 endolytic transglycosylase MltG compare
BBR_RS18565 -3.6 -2.4 CHAP domain-containing protein compare
BBR_RS10580 -3.5 -4.4 septation inhibitor protein compare
BBR_RS10620 -3.5 -5.3 phosphoprotein phosphatase compare
BBR_RS20435 -3.4 -1.8 CCA tRNA nucleotidyltransferase compare
BBR_RS14190 -3.3 -11.6 transcriptional regulator compare
BBR_RS19160 -3.3 -2.2 phosphate ABC transporter permease subunit PstC compare
BBR_RS20480 -2.9 -1.5 membrane protein compare
BBR_RS19815 -2.7 -19.0 ABC transporter permease compare
BBR_RS15055 -2.7 -2.9 hypothetical protein compare
BBR_RS18050 -2.7 -3.2 threonylcarbamoyl-AMP synthase compare
BBR_RS13070 -2.7 -1.9 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
BBR_RS19125 -2.6 -11.6 hypothetical protein compare
BBR_RS16220 -2.5 -1.8 DNA cytosine methyltransferase compare
BBR_RS12375 -2.5 -2.4 pantetheine-phosphate adenylyltransferase compare
BBR_RS12045 -2.5 -4.7 hypothetical protein compare
BBR_RS12310 -2.4 -2.2 signal recognition particle protein compare
BBR_RS12235 -2.4 -1.7 hypothetical protein compare
BBR_RS19820 -2.3 -16.2 ATP-binding protein of ABC transporter system compare
BBR_RS10285 -2.3 -2.4 membrane protein compare
BBR_RS18745 -2.3 -2.2 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS20460 -2.2 -5.3 chromosome partitioning protein ParB compare
BBR_RS11470 -2.2 -2.1 6-phosphogluconolactonase compare
BBR_RS16635 -2.2 -2.5 ABC transporter ATP-binding protein compare
BBR_RS15130 -2.2 -3.4 metal-sulfur cluster assembly factor compare
BBR_RS13635 -2.2 -8.9 carbamoyl-phosphate synthase large subunit compare
BBR_RS18180 -2.1 -10.4 ATP-dependent zinc metalloprotease FtsH compare
BBR_RS19760 -2.1 -2.4 polysaccharide ABC transporter ATPase compare
BBR_RS19120 -2.1 -7.9 helicase compare
BBR_RS17500 -2.1 -8.0 hypothetical protein compare
BBR_RS15425 -2.0 -3.3 aspartate carbamoyltransferase compare
BBR_RS16750 -2.0 -2.9 ParA family protein compare
BBR_RS14265 -2.0 -5.4 Solute-binding protein of ABC transporter system for metals compare
BBR_RS19740 -1.9 -15.3 DUF2142 domain-containing protein compare
BBR_RS10940 -1.9 -10.4 DedA family protein compare
BBR_RS12305 -1.9 -5.8 endonuclease/exonuclease/phosphatase family protein compare
BBR_RS16425 -1.9 -2.5 DUF3071 domain-containing protein compare
BBR_RS17495 -1.8 -8.7 DUF58 domain-containing protein compare
BBR_RS16960 -1.8 -3.7 transcriptional regulator MraZ compare
BBR_RS13030 -1.8 -1.3 cell division ATP-binding protein FtsE compare
BBR_RS17490 -1.8 -10.6 MoxR family ATPase compare
BBR_RS15090 -1.8 -1.7 type II 3-dehydroquinate dehydratase compare
BBR_RS16955 -1.8 -3.0 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
BBR_RS20465 -1.8 -6.7 chromosome partitioning protein compare
BBR_RS15435 -1.8 -4.0 dihydroorotase compare
BBR_RS15085 -1.7 -1.5 3-dehydroquinate synthase compare
BBR_RS16275 -1.7 -2.1 leucine--tRNA ligase compare
BBR_RS16625 -1.7 -4.8 DUF3710 domain-containing protein compare
BBR_RS17510 -1.6 -6.7 VWA domain-containing protein compare
BBR_RS12295 -1.6 -1.6 RNA-binding protein compare
BBR_RS11510 -1.6 -1.2 signal recognition particle-docking protein FtsY compare
BBR_RS11175 -1.6 -10.5 penicillin-binding protein compare
BBR_RS17640 -1.6 -2.3 DNA-directed RNA polymerase subunit omega compare
BBR_RS17515 -1.6 -5.9 hypothetical protein compare
BBR_RS18735 -1.6 -7.5 hypothetical protein compare
BBR_RS19465 -1.6 -4.1 ribonuclease E/G compare
BBR_RS17290 -1.5 -7.2 Fused ATP-binding protein and permease of ABC transporter compare
BBR_RS19355 -1.5 -1.6 tRNA-Gly compare
BBR_RS17505 -1.5 -8.8 VWA domain-containing protein compare
BBR_RS14615 -1.5 -6.3 histidine kinase compare
BBR_RS19190 -1.5 -6.4 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS16845 -1.5 -1.9 bifunctional folylpolyglutamate synthase/dihydrofolate synthase compare
BBR_RS16975 -1.5 -4.4 transcriptional repressor NrdR compare
BBR_RS13630 -1.5 -4.4 carbamoyl-phosphate synthase small subunit compare
BBR_RS14215 -1.5 -2.5 peptidase compare
BBR_RS10660 -1.4 -10.4 esterase compare
BBR_RS14260 -1.4 -1.9 ABC transporter ATP-binding protein compare
BBR_RS16905 -1.4 -4.8 hypothetical protein compare
BBR_RS11720 -1.4 -3.5 DUF2469 domain-containing protein compare
BBR_RS19155 -1.4 -6.6 phosphate ABC transporter, permease protein PstA compare
BBR_RS16640 -1.4 -3.4 ABC transporter permease compare
BBR_RS15805 -1.4 -4.7 prolipoprotein diacylglyceryl transferase compare
BBR_RS15665 -1.3 -3.5 preprotein translocase subunit YajC compare
BBR_RS16490 -1.3 -4.3 polyprenyl synthase compare
BBR_RS12605 -1.3 -2.9 glycosyltransferase family 2 protein compare
BBR_RS19540 -1.3 -1.5 homoserine dehydrogenase compare
BBR_RS15785 -1.3 -2.0 CDP-alcohol phosphatidyltransferase family protein compare
BBR_RS18725 -1.3 -2.5 ribonuclease HI compare
BBR_RS13980 -1.2 -4.8 HD domain-containing protein compare
BBR_RS15440 -1.2 -3.4 orotidine-5'-phosphate decarboxylase compare
BBR_RS19515 -1.2 -9.2 ABC transporter ATP-binding protein compare
BBR_RS13820 -1.2 -1.6 ATP-binding protein compare
BBR_RS19450 -1.2 -1.0 GTPase ObgE compare
BBR_RS19435 -1.2 -2.2 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS16540 -1.2 -5.3 XRE family transcriptional regulator compare
BBR_RS16985 -1.2 -3.4 transcriptional repressor LexA compare
BBR_RS13040 -1.2 -0.8 CHAP domain-containing protein compare
BBR_RS14370 -1.1 -3.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS16820 -1.1 -1.8 RNA polymerase sigma factor RpoE compare
BBR_RS15050 -1.1 -2.3 DUF948 domain-containing protein compare
BBR_RS12590 -1.1 -2.0 beta-1,6-N-acetylglucosaminyltransferase compare
BBR_RS17455 -1.1 -6.6 DNA-binding response regulator compare
BBR_RS18215 -1.1 -4.8 AI-2E family transporter compare
BBR_RS19395 -1.1 -2.3 hypothetical protein compare
BBR_RS18690 -1.1 -4.4 diacylglycerol kinase compare
BBR_RS14205 -1.1 -2.6 hypothetical protein compare
BBR_RS13490 -1.0 -1.4 30S ribosomal protein S7 compare
BBR_RS10615 -1.0 -3.3 FtsW/RodA/SpoVE family cell cycle protein compare
BBR_RS14540 -1.0 -2.3 Na+/H+ antiporter NhaA compare
BBR_RS15520 -1.0 -2.4 shikimate 5-dehydrogenase compare
BBR_RS18185 -1.0 -3.5 hypoxanthine phosphoribosyltransferase compare
BBR_RS15660 -1.0 -2.8 Holliday junction branch migration DNA helicase RuvB compare
BBR_RS13750 -1.0 -1.6 DivIVA domain-containing protein compare
BBR_RS14240 -1.0 -3.5 1,4-alpha-glucan branching protein GlgB compare
BBR_RS12810 -1.0 -4.8 hypothetical protein compare
BBR_RS16675 -0.9 -2.6 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS13735 -0.9 -1.1 Lon protease compare
BBR_RS18170 -0.9 -1.7 dihydropteroate synthase compare
BBR_RS14080 -0.9 -0.9 hypothetical protein compare
BBR_RS19945 -0.9 -4.9 MarR family transcriptional regulator compare
BBR_RS16430 -0.9 -2.2 nucleotide pyrophosphatase compare
BBR_RS13300 -0.9 -1.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
BBR_RS20415 -0.9 -6.9 G5 domain-containing protein compare
BBR_RS13985 -0.9 -4.0 membrane protein compare
BBR_RS13770 -0.8 -1.6 DNA repair protein RecO compare
BBR_RS14140 -0.8 -1.5 Ppx/GppA family phosphatase compare
BBR_RS13455 -0.8 -2.2 formate-dependent phosphoribosylglycinamide formyltransferase compare
BBR_RS19795 -0.8 -6.9 hypothetical protein compare
BBR_RS20720 -0.8 -2.7 DUF4422 domain-containing protein compare
BBR_RS12940 -0.8 -4.7 hypothetical protein compare
BBR_RS15680 -0.8 -4.0 succinate--CoA ligase subunit alpha compare
BBR_RS21015 -0.8 -1.0 hypothetical protein compare
BBR_RS10265 -0.8 -5.1 DNA replication and repair protein RecF compare
BBR_RS14625 -0.8 -4.1 pyrroline-5-carboxylate reductase compare
BBR_RS19510 -0.8 -7.2 ABC transporter permease compare
BBR_RS20455 -0.8 -4.2 thioredoxin-disulfide reductase compare
BBR_RS12555 -0.8 -5.0 protein-tyrosine-phosphatase compare
BBR_RS12785 -0.8 -1.4 transcriptional regulator compare
BBR_RS10735 -0.8 -5.9 zinc metalloprotease HtpX compare
BBR_RS21170 -0.8 -4.5 membrane protein insertion efficiency factor YidD compare
BBR_RS20420 -0.8 -5.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
BBR_RS20450 -0.8 -6.1 murein biosynthesis integral membrane protein MurJ compare
BBR_RS16655 -0.8 -3.0 tyrosine recombinase XerC compare
BBR_RS20795 -0.7 -1.4 cystathionine gamma-lyase compare
BBR_RS14210 -0.7 -0.5 hypothetical protein compare
BBR_RS19755 -0.7 -5.0 glycosyl transferase compare
BBR_RS16400 -0.7 -1.7 hypothetical protein compare
BBR_RS10900 -0.7 -0.8 molecular chaperone DnaK compare
BBR_RS17040 -0.7 -3.1 hypothetical protein compare
BBR_RS18575 -0.7 -2.2 hypothetical protein compare
BBR_RS15455 -0.7 -1.3 orotate phosphoribosyltransferase compare
BBR_RS18175 -0.7 -0.9 GTP cyclohydrolase I FolE compare
BBR_RS15445 -0.7 -2.9 dihydroorotate dehydrogenase electron transfer subunit compare
BBR_RS15655 -0.7 -2.1 Holliday junction branch migration protein RuvA compare
BBR_RS13640 -0.7 -2.2 orotidine-5'-phosphate decarboxylase compare
BBR_RS14085 -0.7 -1.7 nicotinate-nucleotide adenylyltransferase compare
BBR_RS18990 -0.7 -0.9 AbrB family transcriptional regulator compare
BBR_RS19095 -0.7 -5.4 magnesium transporter compare
BBR_RS19535 -0.7 -5.5 homoserine kinase (EC 2.7.1.39) (from data) compare
BBR_RS16140 -0.7 -4.4 long-chain fatty acid--CoA ligase compare
BBR_RS12975 -0.7 -4.8 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS15675 -0.7 -3.4 ADP-forming succinate--CoA ligase subunit beta compare
BBR_RS12980 -0.7 -4.9 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS11515 -0.7 -5.5 ammonium transporter compare
BBR_RS19905 -0.7 -0.7 methionine--tRNA ligase compare
BBR_RS17460 -0.7 -3.9 TPM domain-containing protein compare
BBR_RS16515 -0.7 -1.5 preprotein translocase subunit SecA compare
BBR_RS14280 -0.7 -1.8 dephospho-CoA kinase compare
BBR_RS12820 -0.7 -4.9 hypothetical protein compare
BBR_RS15080 -0.7 -1.5 chorismate synthase compare
BBR_RS20830 -0.7 -1.5 hypothetical protein compare
BBR_RS20825 -0.6 -1.6 hypothetical protein compare
BBR_RS20440 -0.6 -2.6 NUDIX hydrolase compare
BBR_RS16745 -0.6 -2.8 segregation/condensation protein A compare
BBR_RS16965 -0.6 -0.4 ATP-dependent DNA helicase compare
BBR_RS16135 -0.6 -1.2 peptide deformylase compare
BBR_RS17555 -0.6 -1.2 ubiquitin-like protein Pup compare
BBR_RS14070 -0.6 -2.7 threonine synthase (EC 4.2.3.1) (from data) compare
BBR_RS14200 -0.6 -1.8 WhiB family transcriptional regulator compare
BBR_RS14475 -0.6 -4.0 formate C-acetyltransferase compare
BBR_RS12860 -0.6 -4.3 DUF2183 domain-containing protein compare
BBR_RS16685 -0.6 -1.1 alcohol dehydrogenase compare
BBR_RS13740 -0.6 -2.1 DUF3052 domain-containing protein compare
BBR_RS19170 -0.6 -4.6 DNA-binding response regulator compare
BBR_RS20930 -0.6 -1.6 hypothetical protein compare
BBR_RS20925 -0.6 -1.2 amino acid permease compare
BBR_RS12835 -0.5 -2.4 thioredoxin compare
BBR_RS17880 -0.5 -1.5 nucleotidyltransferase compare
BBR_RS12470 -0.5 -4.3 long-chain fatty acid--CoA ligase compare
BBR_RS19260 -0.5 -4.3 hypothetical protein compare
BBR_RS15450 -0.5 -1.7 dihydroorotate dehydrogenase compare
BBR_RS13830 -0.5 -0.6 DUF4191 domain-containing protein compare
BBR_RS14780 -0.5 -2.0 XRE family transcriptional regulator compare
BBR_RS10755 -0.5 -1.8 adenylosuccinate synthase compare
BBR_RS16835 -0.5 -2.1 cell wall biosynthesis-associated protein compare
BBR_RS12175 -0.5 -3.6 TetR/AcrR family transcriptional regulator compare
BBR_RS11970 -0.5 -0.7 Phage transcriptional regulator compare
BBR_RS19640 -0.5 -0.5 phosphoesterase compare
BBR_RS20475 -0.5 -4.2 KH domain-containing protein compare
BBR_RS18220 -0.5 -3.4 glycosyltransferase family 2 protein compare
BBR_RS10905 -0.5 -1.8 nucleotide exchange factor GrpE compare
BBR_RS18525 -0.5 -1.2 hypothetical protein compare
BBR_RS20725 -0.5 -2.0 hypothetical protein compare
BBR_RS20860 -0.5 -1.2 hypothetical protein compare
BBR_RS15960 -0.5 -2.3 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress Ramoplanin in Bifidobacterium breve UCC2003

For stress Ramoplanin across organisms