Experiment set3IT079 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium acetate 80 mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -6.2 -7.1 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_4803 -5.7 -3.9 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_5430 -5.2 -13.7 Transglycosylase, Slt family compare
Pf6N2E2_5527 -4.7 -4.5 Cold shock protein CspC compare
Pf6N2E2_623 -4.2 -2.5 FIG00954674: hypothetical protein compare
Pf6N2E2_2274 -3.8 -6.1 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_625 -3.6 -7.6 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_2753 -3.3 -4.0 HtrA protease/chaperone protein compare
Pf6N2E2_624 -3.3 -9.6 hypothetical protein PA3071 compare
Pf6N2E2_2277 -3.2 -3.7 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_622 -3.0 -5.0 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_5242 -2.9 -2.9 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_621 -2.9 -10.0 TPR domain protein in aerotolerance operon compare
Pf6N2E2_3782 -2.7 -4.9 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_620 -2.7 -7.9 BatD compare
Pf6N2E2_2574 -2.5 -2.7 Flagellar synthesis regulator FleN compare
Pf6N2E2_3198 -2.4 -4.0 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_3611 -2.4 -2.4 HflC protein compare
Pf6N2E2_3839 -2.3 -5.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_6140 -2.3 -1.9 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_4352 -2.0 -3.6 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_2219 -1.9 -2.1 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_5536 -1.9 -2.2 Holliday junction DNA helicase RuvA compare
Pf6N2E2_3460 -1.9 -2.8 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_4416 -1.8 -3.9 Tyrosine recombinase XerC compare
Pf6N2E2_3842 -1.8 -4.6 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3252 -1.8 -7.1 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_4162 -1.6 -3.4 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_2755 -1.6 -3.5 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_5705 -1.6 -3.9 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_5760 -1.6 -11.3 Sensory box histidine kinase/response regulator conserved
Pf6N2E2_4095 -1.5 -10.5 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_3841 -1.5 -6.0 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_4464 -1.5 -2.8 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like compare
Pf6N2E2_3461 -1.5 -2.1 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_5338 -1.4 -8.0 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_5340 -1.3 -5.3 Stringent starvation protein A compare
Pf6N2E2_3062 -1.3 -3.8 Membrane-associated zinc metalloprotease compare
Pf6N2E2_4041 -1.3 -11.2 Acetyl-CoA hydrolase (EC 3.1.2.1) conserved
Pf6N2E2_3349 -1.3 -2.0 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_3258 -1.2 -4.8 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_3351 -1.2 -3.4 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_2473 -1.2 -1.6 Major outer membrane lipoprotein I compare
Pf6N2E2_5671 -1.2 -3.2 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_2253 -1.2 -3.1 hypothetical protein compare
Pf6N2E2_156 -1.2 -2.8 Carbon storage regulator compare
Pf6N2E2_3908 -1.2 -4.7 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_5824 -1.2 -6.8 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54) conserved
Pf6N2E2_5331 -1.2 -4.9 ATPase, AFG1 family compare
Pf6N2E2_2986 -1.2 -4.4 Transcriptional regulator, LuxR family compare
Pf6N2E2_3783 -1.2 -4.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_2217 -1.2 -4.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_1136 -1.1 -3.0 Transcriptional regulator, TetR family compare
Pf6N2E2_3941 -1.1 -3.8 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_3253 -1.1 -4.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_5049 -1.1 -2.2 acetyltransferase, GNAT family compare
Pf6N2E2_4369 -1.1 -2.2 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_5006 -1.1 -5.8 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_5337 -1.1 -3.6 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_5027 -1.1 -7.9 AMP nucleosidase (EC 3.2.2.4) compare
Pf6N2E2_178 -1.1 -1.4 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_3612 -1.0 -2.7 HflK protein compare
Pf6N2E2_5001 -1.0 -2.5 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_5103 -1.0 -1.8 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_3610 -1.0 -5.5 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3940 -1.0 -6.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_5153 -1.0 -4.6 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf6N2E2_2010 -1.0 -2.3 hypothetical protein compare
Pf6N2E2_4599 -1.0 -2.8 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_5178 -1.0 -1.8 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_2317 -1.0 -4.2 Putative analog of CcoH, COG3198 compare
Pf6N2E2_4159 -0.9 -3.6 Cytochrome c4 compare
Pf6N2E2_5339 -0.9 -4.4 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_4601 -0.9 -2.6 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_2261 -0.9 -5.5 VacJ-like lipoprotein precursor compare
Pf6N2E2_5943 -0.9 -1.6 hypothetical protein compare
Pf6N2E2_4353 -0.8 -3.4 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_5862 -0.8 -2.0 Lipoprotein, putative compare
Pf6N2E2_4072 -0.8 -3.9 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_1652 -0.8 -2.3 Transcriptional regulator, TetR family compare
Pf6N2E2_3834 -0.8 -5.5 Lipoprotein NlpD compare
Pf6N2E2_3617 -0.8 -3.7 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_1626 -0.8 -5.0 Putative ATP-binding component of a transport system compare
Pf6N2E2_4075 -0.8 -3.7 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_2218 -0.8 -3.0 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_5371 -0.8 -6.4 Outer membrane component of tripartite multidrug resistance system compare
Pf6N2E2_4747 -0.8 -2.9 Transmembrane sensor compare
Pf6N2E2_4706 -0.8 -2.1 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_6164 -0.8 -1.1 tRNA-Val-TAC compare
Pf6N2E2_5703 -0.8 -2.7 outer membrane protein H1 compare
Pf6N2E2_5373 -0.8 -5.4 required for cephalothin efflux, together with NodT, MFP and FUSC proteins (Pf6N2E2_5371, Pf6N2E2_5374, Pf6N2E2_5372) (from data) compare
Pf6N2E2_3786 -0.8 -2.6 Twin-arginine translocation protein TatC compare
Pf6N2E2_3260 -0.8 -3.7 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_4372 -0.8 -3.4 FIG00460773: hypothetical protein compare
Pf6N2E2_2503 -0.8 -1.1 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_2340 -0.8 -3.9 Transcriptional regulator, GntR family compare
Pf6N2E2_1238 -0.8 -1.9 hypothetical protein compare
Pf6N2E2_4204 -0.8 -1.3 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_5544 -0.8 -4.4 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_4362 -0.7 -2.3 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_3192 -0.7 -2.7 tRNA:Cm32/Um32 methyltransferase compare
Pf6N2E2_4418 -0.7 -0.8 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_5555 -0.7 -1.0 Cold shock protein CspA compare
Pf6N2E2_2527 -0.7 -3.3 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_634 -0.7 -5.3 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Pf6N2E2_5704 -0.7 -4.0 Transcriptional regulatory protein PhoP compare
Pf6N2E2_5372 -0.7 -3.7 Inner membrane component of tripartite multidrug resistance system compare
Pf6N2E2_70 -0.7 -2.5 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_1441 -0.7 -1.6 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) compare
Pf6N2E2_3118 -0.7 -2.3 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf6N2E2_288 -0.7 -1.8 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_5088 -0.7 -2.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2258 -0.7 -4.5 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_43 -0.7 -4.1 Histidine permease YuiF compare
Pf6N2E2_1774 -0.7 -1.4 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_942 -0.7 -1.6 Mll6465 protein compare
Pf6N2E2_2552 -0.7 -3.8 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_734 -0.7 -3.0 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_5150 -0.7 -4.1 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_5316 -0.7 -1.5 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_2320 -0.7 -1.3 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2318 -0.7 -4.6 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_4511 -0.7 -4.8 glutamine synthetase family protein compare
Pf6N2E2_2282 -0.7 -2.1 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_5321 -0.7 -5.1 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_5661 -0.7 -2.5 L-Arginine ABC transporter, permease protein AotQ (from data) compare
Pf6N2E2_5505 -0.7 -2.1 hypothetical protein compare
Pf6N2E2_5605 -0.7 -2.0 FxsA protein compare
Pf6N2E2_664 -0.6 -2.0 Acetoin catabolism protein X compare
Pf6N2E2_2413 -0.6 -1.6 FIG074102: hypothetical protein compare
Pf6N2E2_2313 -0.6 -2.0 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_3744 -0.6 -1.5 General secretion pathway protein F compare
Pf6N2E2_3074 -0.6 -1.2 FIG00960973: hypothetical protein compare
Pf6N2E2_4999 -0.6 -2.7 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_142 -0.6 -3.1 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3792 -0.6 -3.5 Glucans biosynthesis protein G precursor compare
Pf6N2E2_5987 -0.6 -2.9 OmpA family protein compare
Pf6N2E2_55 -0.6 -1.4 Probable hydrolase compare
Pf6N2E2_3840 -0.6 -2.1 FIG00956267: hypothetical protein compare
Pf6N2E2_1670 -0.6 -1.9 conserved membrane protein compare
Pf6N2E2_4276 -0.6 -3.1 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_81 -0.6 -2.7 hypothetical protein compare
Pf6N2E2_2264 -0.6 -2.5 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_1056 -0.6 -0.9 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_1720 -0.6 -1.5 hypothetical protein compare
Pf6N2E2_754 -0.6 -1.1 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf6N2E2_5520 -0.6 -2.8 Sensory box histidine kinase compare
Pf6N2E2_5130 -0.6 -1.6 hypothetical protein compare
Pf6N2E2_2912 -0.6 -1.1 FIG00954094: hypothetical protein compare
Pf6N2E2_2999 -0.6 -1.9 probable tail fiber assembly protein compare
Pf6N2E2_2842 -0.6 -1.8 hypothetical protein compare
Pf6N2E2_3472 -0.6 -1.7 Probable short-chain dehydrogenase compare
Pf6N2E2_502 -0.6 -2.1 hypothetical protein compare
Pf6N2E2_4624 -0.6 -0.8 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_6090 -0.6 -1.3 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_1625 -0.6 -2.0 Ferric reductase (1.6.99.14) compare
Pf6N2E2_1427 -0.6 -3.5 6-aminohexanoate-dimer hydrolase (EC 3.5.1.46) compare
Pf6N2E2_2500 -0.6 -2.9 Putative membrane protein compare
Pf6N2E2_2180 -0.6 -1.6 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_1040 -0.6 -1.2 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_5374 -0.6 -2.9 Membrane fusion component of tripartite multidrug resistance system compare
Pf6N2E2_260 -0.6 -2.7 Regulator of cell morphogenesis and NO signaling compare
Pf6N2E2_4071 -0.6 -2.7 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_1283 -0.6 -1.2 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_4417 -0.6 -2.7 Protein of unknown function DUF484 compare
Pf6N2E2_3270 -0.6 -2.3 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_290 -0.5 -1.8 Cold shock protein CspD compare
Pf6N2E2_6100 -0.5 -1.7 tRNA-Val-TAC compare
Pf6N2E2_5219 -0.5 -3.7 FIG140336: TPR domain protein compare
Pf6N2E2_2311 -0.5 -3.7 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_4638 -0.5 -1.6 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_1782 -0.5 -1.9 STAS domain protein compare
Pf6N2E2_1747 -0.5 -1.8 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_5245 -0.5 -2.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2675 -0.5 -0.9 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_1694 -0.5 -1.0 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_2973 -0.5 -2.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_440 -0.5 -1.8 FIG00954920: hypothetical protein compare
Pf6N2E2_3989 -0.5 -3.0 FIG00958473: hypothetical protein compare
Pf6N2E2_1792 -0.5 -2.0 Hydroxypyruvate isomerase (EC 5.3.1.22) compare
Pf6N2E2_3696 -0.5 -0.7 hypothetical protein compare
Pf6N2E2_58 -0.5 -1.0 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_3885 -0.5 -1.8 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_663 -0.5 -1.7 Transcriptional activator of acetoin dehydrogenase operon AcoR compare
Pf6N2E2_2003 -0.5 -1.8 hypothetical protein compare
Pf6N2E2_922 -0.5 -2.3 FIG00794167: hypothetical protein compare
Pf6N2E2_3899 -0.5 -3.8 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_5843 -0.5 -1.4 hypothetical protein compare
Pf6N2E2_4047 -0.5 -3.0 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_601 -0.5 -2.1 GlpG protein (membrane protein of glp regulon) compare
Pf6N2E2_1153 -0.5 -1.9 small molecule metabolism; degradation; fatty acid compare
Pf6N2E2_2181 -0.5 -1.2 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_5662 -0.5 -3.5 L-Arginine ABC transporter, permease protein AotM (from data) compare
Pf6N2E2_5319 -0.5 -3.2 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_2835 -0.5 -1.6 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf6N2E2_4594 -0.5 -1.1 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
Pf6N2E2_5714 -0.5 -1.5 Flavoprotein WrbA compare
Pf6N2E2_2827 -0.5 -0.9 hypothetical protein compare
Pf6N2E2_4414 -0.5 -1.8 FIG00953808: hypothetical protein compare
Pf6N2E2_5320 -0.5 -2.6 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare


Specific Phenotypes

For 4 genes in this experiment

For stress Sodium acetate in Pseudomonas fluorescens FW300-N2E2

For stress Sodium acetate across organisms