Experiment set3IT079 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium acetate 80 mM

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_3171 +1.1 2.8 hypothetical protein compare
Pf6N2E2_5160 +1.1 2.8 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_2869 +0.9 1.3 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_5766 +0.9 2.6 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_1248 +0.9 2.3 MutT/nudix family protein compare
Pf6N2E2_16 +0.9 2.5 hypothetical protein compare
Pf6N2E2_4556 +0.8 3.4 FIG00953078: hypothetical protein compare
Pf6N2E2_2582 +0.8 3.4 Flagellar motor switch protein FliN compare
Pf6N2E2_420 +0.8 2.3 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_6085 +0.8 1.6 Aha1 domain superfamily compare
Pf6N2E2_5133 +0.7 3.5 FIG00953980: hypothetical protein compare
Pf6N2E2_5739 +0.7 1.9 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_2156 +0.7 2.6 Putative polyketide synthase (Fragment) compare
Pf6N2E2_5723 +0.7 5.5 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_4054 +0.7 1.8 Osmotically inducible protein C compare
Pf6N2E2_5936 +0.7 2.4 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) compare
Pf6N2E2_2794 +0.7 1.8 putative membrane protein compare
Pf6N2E2_6035 +0.7 1.1 alpha/beta hydrolase fold compare
Pf6N2E2_3981 +0.7 6.0 T1SS secreted agglutinin RTX compare
Pf6N2E2_2375 +0.7 1.6 Response regulator NasT compare
Pf6N2E2_2624 +0.6 4.9 Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) compare
Pf6N2E2_1975 +0.6 3.2 Integrase regulator R compare
Pf6N2E2_2013 +0.6 1.4 hypothetical protein compare
Pf6N2E2_1886 +0.6 1.6 hypothetical protein compare
Pf6N2E2_2580 +0.6 2.5 Flagellar biosynthesis protein FliP compare
Pf6N2E2_3978 +0.6 5.1 Type I secretion system, membrane fusion protein LapC compare
Pf6N2E2_3326 +0.6 1.4 hypothetical protein compare
Pf6N2E2_5599 +0.6 2.6 Electron transport complex protein RnfA compare
Pf6N2E2_1448 +0.6 2.2 hypothetical protein compare
Pf6N2E2_5906 +0.6 2.4 Flp pilus assembly protein, pilin Flp compare
Pf6N2E2_3969 +0.6 1.4 Membrane-fusion protein compare
Pf6N2E2_987 +0.6 2.2 hypothetical protein compare
Pf6N2E2_1673 +0.5 2.4 Transcriptional regulator, TetR family compare
Pf6N2E2_2196 +0.5 2.9 FIG00953347: hypothetical protein compare
Pf6N2E2_395 +0.5 2.0 Glutathione S-transferase (EC 2.5.1.18) compare
Pf6N2E2_2590 +0.5 3.9 Flagellum-specific ATP synthase FliI compare
Pf6N2E2_3204 +0.5 1.3 Rho-specific inhibitor of transcription termination (YaeO) compare
Pf6N2E2_3980 +0.5 4.1 Type I secretion system, outer membrane component LapE compare
Pf6N2E2_2591 +0.5 2.4 Flagellar assembly protein FliH compare
Pf6N2E2_2088 +0.5 1.3 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_3872 +0.5 2.4 hypothetical protein compare
Pf6N2E2_4181 +0.5 1.2 Organic hydroperoxide resistance protein compare
Pf6N2E2_3663 +0.5 3.5 Glycosyl transferase compare
Pf6N2E2_5015 +0.5 3.1 Magnesium and cobalt efflux protein CorC compare
Pf6N2E2_1034 +0.5 1.2 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_1966 +0.5 2.4 SAM-dependent methyltransferases compare
Pf6N2E2_4640 +0.5 1.1 hypothetical protein compare
Pf6N2E2_5030 +0.5 2.8 Transcriptional regulator, AsnC family compare
Pf6N2E2_1490 +0.5 1.9 hypothetical protein compare
Pf6N2E2_5694 +0.5 3.5 Flagellar basal-body rod protein FlgB compare
Pf6N2E2_4838 +0.5 3.5 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) compare
Pf6N2E2_1438 +0.5 2.3 Methyltransferase (EC 2.1.1.-) compare
Pf6N2E2_2592 +0.5 2.6 Flagellar motor switch protein FliG compare
Pf6N2E2_2041 +0.5 2.4 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) compare
Pf6N2E2_723 +0.5 1.4 FIG138517: Putative lipid carrier protein compare
Pf6N2E2_2402 +0.5 1.6 hypothetical protein compare
Pf6N2E2_3983 +0.5 3.6 Membrane bound c-di-GMP receptor LapD compare
Pf6N2E2_3234 +0.5 3.1 mandelate racemase/muconate lactonizing enzyme family protein compare
Pf6N2E2_4055 +0.5 2.0 FIG00955509: hypothetical protein compare
Pf6N2E2_2934 +0.5 2.4 lipoprotein, putative compare
Pf6N2E2_2971 +0.5 4.3 AmpG permease compare
Pf6N2E2_3979 +0.5 3.6 Type I secretion system ATPase, LssB family LapB compare
Pf6N2E2_3008 +0.5 2.5 FIG00954242: hypothetical protein compare
Pf6N2E2_5279 +0.5 2.6 Hypothetical flavoprotein YqcA (clustered with tRNA pseudouridine synthase C) compare
Pf6N2E2_719 +0.5 1.4 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_2864 +0.5 0.9 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_4415 +0.5 1.1 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase compare
Pf6N2E2_5052 +0.5 1.4 Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family compare
Pf6N2E2_1089 +0.5 1.9 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_5158 +0.4 1.8 FIG00954153: hypothetical protein compare
Pf6N2E2_945 +0.4 1.5 Transcriptional regulator, TetR family compare
Pf6N2E2_4143 +0.4 2.5 ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A compare
Pf6N2E2_2594 +0.4 3.6 Flagellar hook-basal body complex protein FliE compare
Pf6N2E2_5697 +0.4 4.0 Flagellar hook protein FlgE compare
Pf6N2E2_4499 +0.4 1.9 protein of unknown function DUF86 compare
Pf6N2E2_552 +0.4 1.5 Uncharacterized protein ImpF compare
Pf6N2E2_3003 +0.4 1.7 Bacteriophage protein GP46 compare
Pf6N2E2_2124 +0.4 1.2 Mg(2+) transport ATPase protein C compare
Pf6N2E2_1484 +0.4 2.3 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
Pf6N2E2_1534 +0.4 1.4 Probable transmembrane protein compare
Pf6N2E2_3595 +0.4 2.0 Large protein containing transglutaminase-like domain compare
Pf6N2E2_2579 +0.4 2.4 Flagellar biosynthesis protein FliQ compare
Pf6N2E2_4427 +0.4 1.0 FIG00954215: hypothetical protein compare
Pf6N2E2_862 +0.4 2.0 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_4543 +0.4 2.1 hypothetical protein compare
Pf6N2E2_1552 +0.4 2.1 Transcriptional regulator, LysR family compare
Pf6N2E2_6022 +0.4 1.5 StbE replicon stabilization toxin compare
Pf6N2E2_5291 +0.4 4.0 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_3641 +0.4 1.0 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Pf6N2E2_84 +0.4 1.4 hypothetical protein compare
Pf6N2E2_4485 +0.4 3.5 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Pf6N2E2_99 +0.4 1.8 hypothetical protein compare
Pf6N2E2_5748 +0.4 1.5 Transcriptional activator protein LuxR compare
Pf6N2E2_1147 +0.4 1.2 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_4731 +0.4 2.3 FIG00955037: hypothetical protein compare
Pf6N2E2_1320 +0.4 1.8 Putative response regulator compare
Pf6N2E2_1759 +0.4 1.8 uncharacterized domain 1 compare
Pf6N2E2_2599 +0.4 2.5 Flagellar biosynthesis protein FliS compare
Pf6N2E2_1355 +0.4 2.3 Ribose operon repressor compare
Pf6N2E2_250 +0.4 1.8 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_4453 +0.4 3.6 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_1213 +0.4 1.9 hypothetical protein compare
Pf6N2E2_5621 +0.4 1.3 DNA-binding response regulator compare
Pf6N2E2_3325 +0.4 1.4 ABC transporter, ATP-binding protein compare
Pf6N2E2_234 +0.4 1.4 FIG00454312: hypothetical protein compare
Pf6N2E2_6067 +0.4 2.3 ABC transporter in pyoverdin gene cluster, ATP-binding component compare
Pf6N2E2_331 +0.4 1.6 Putative translation initiation inhibitor, yjgF family compare
Pf6N2E2_3820 +0.4 1.4 hypothetical protein compare
Pf6N2E2_477 +0.4 1.2 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf6N2E2_2324 +0.4 1.2 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf6N2E2_98 +0.4 1.1 putative transmembrane protein compare
Pf6N2E2_328 +0.4 1.3 hypothetical protein compare
Pf6N2E2_3162 +0.4 2.0 hypothetical protein compare
Pf6N2E2_350 +0.4 1.3 Gfa-like protein compare
Pf6N2E2_4809 +0.4 3.4 COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases compare
Pf6N2E2_638 +0.4 1.2 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_82 +0.4 0.8 hypothetical protein compare
Pf6N2E2_1470 +0.4 1.7 Transcriptional regulator, LysR family compare
Pf6N2E2_451 +0.4 1.0 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_155 +0.4 1.4 Probable transmembrane protein compare
Pf6N2E2_2281 +0.4 1.1 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_3682 +0.4 2.5 probable membrane protein YPO0899 compare
Pf6N2E2_2666 +0.4 1.7 hypothetical protein compare
Pf6N2E2_3947 +0.4 0.7 Cd(II)/Pb(II)-responsive transcriptional regulator compare
Pf6N2E2_2577 +0.4 2.9 Flagellar biosynthesis protein FlhB compare
Pf6N2E2_2573 +0.4 2.1 RNA polymerase sigma factor for flagellar operon compare
Pf6N2E2_3301 +0.4 3.1 ABC transporter, ATP-binding protein compare
Pf6N2E2_4562 +0.4 1.5 L-cystine uptake protein TcyP compare
Pf6N2E2_2625 +0.4 2.0 Flagellar P-ring protein FlgI compare
Pf6N2E2_5523 +0.4 1.3 Small-conductance mechanosensitive channel compare
Pf6N2E2_2583 +0.4 2.5 Flagellar motor switch protein FliM compare
Pf6N2E2_5794 +0.4 1.4 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_1288 +0.4 1.1 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf6N2E2_5756 +0.4 1.2 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_6055 +0.4 2.0 Homoserine kinase (EC 2.7.1.39) compare
Pf6N2E2_2930 +0.4 1.7 INTEGRAL MEMBRANE PROTEIN (Rhomboid family) compare
Pf6N2E2_443 +0.4 1.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5695 +0.4 2.5 Flagellar basal-body rod protein FlgC compare
Pf6N2E2_5771 +0.4 2.5 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_6059 +0.3 1.7 FIG008443: hypothetical protein compare
Pf6N2E2_5264 +0.3 1.9 hypothetical protein compare
Pf6N2E2_1443 +0.3 1.7 putative aldo/keto reductase compare
Pf6N2E2_882 +0.3 1.9 FIG00961517: hypothetical protein compare
Pf6N2E2_1806 +0.3 1.4 hypothetical protein compare
Pf6N2E2_1723 +0.3 1.1 Transcriptional regulator, TetR family compare
Pf6N2E2_952 +0.3 1.2 putative exported protein compare
Pf6N2E2_336 +0.3 2.1 hypothetical protein compare
Pf6N2E2_2055 +0.3 1.9 StbE replicon stabilization toxin compare
Pf6N2E2_6058 +0.3 2.1 FIG139976: hypothetical protein compare
Pf6N2E2_1500 +0.3 1.7 LysR family transcriptional regulator lrhA compare
Pf6N2E2_3625 +0.3 2.9 Flagellar motor rotation protein MotA compare
Pf6N2E2_913 +0.3 2.0 FIG00958137: hypothetical protein compare
Pf6N2E2_4423 +0.3 1.0 FIG00953342: hypothetical protein compare
Pf6N2E2_4579 +0.3 0.6 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_4501 +0.3 2.3 Alkyl hydroperoxide reductase subunit C-like protein compare
Pf6N2E2_3138 +0.3 1.2 YaeQ protein compare
Pf6N2E2_2984 +0.3 1.4 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_2071 +0.3 1.2 hypothetical protein compare
Pf6N2E2_4008 +0.3 1.5 hypothetical protein compare
Pf6N2E2_1997 +0.3 1.4 FIG00956406: hypothetical protein compare
Pf6N2E2_2351 +0.3 1.7 Oxygen-regulated invasion protein OrgA compare
Pf6N2E2_1464 +0.3 1.8 hypothetical protein compare
Pf6N2E2_3725 +0.3 1.0 FIG085779: Lipoprotein compare
Pf6N2E2_3870 +0.3 1.2 hypothetical protein compare
Pf6N2E2_460 +0.3 1.7 Glycerate kinase (EC 2.7.1.31) compare
Pf6N2E2_2623 +0.3 2.7 Flagellar hook-associated protein FlgK compare
Pf6N2E2_4007 +0.3 1.5 FIG00956018: hypothetical protein compare
Pf6N2E2_90 +0.3 2.1 Lipoprotein, putative compare
Pf6N2E2_2121 +0.3 1.1 hypothetical protein compare
Pf6N2E2_1743 +0.3 0.7 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf6N2E2_2178 +0.3 2.2 FIG00960144: hypothetical protein compare
Pf6N2E2_1758 +0.3 0.8 Transcriptional regulator, MarR family compare
Pf6N2E2_3475 +0.3 0.6 hypothetical protein compare
Pf6N2E2_5878 +0.3 1.9 FIG002571: 4-hydroxybenzoyl-CoA thioesterase domain protein compare
Pf6N2E2_1115 +0.3 1.2 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Pf6N2E2_765 +0.3 1.3 Fap system putative outer membrane protein compare
Pf6N2E2_5689 +0.3 1.8 Flagellar biosynthesis protein FlgN compare
Pf6N2E2_2363 +0.3 1.6 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Pf6N2E2_3975 +0.3 1.3 Taurine transport ATP-binding protein TauB compare
Pf6N2E2_2622 +0.3 2.6 Flagellar hook-associated protein FlgL compare
Pf6N2E2_379 +0.3 2.1 hypothetical protein compare
Pf6N2E2_4987 +0.3 0.6 MaoC-like domain protein compare
Pf6N2E2_449 +0.3 0.9 Lactoylglutathione lyase (EC 4.4.1.5) compare
Pf6N2E2_2836 +0.3 1.8 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6); Glutaconate CoA-transferase subunit B (EC 2.8.3.12) compare
Pf6N2E2_4496 +0.3 1.8 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_1502 +0.3 0.7 Two-component system regulatory protein compare
Pf6N2E2_4691 +0.3 0.7 hypothetical protein compare
Pf6N2E2_1181 +0.3 1.8 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_2589 +0.3 1.7 Flagellar protein FliJ compare
Pf6N2E2_4018 +0.3 1.7 RNA polymerase sigma-E factor compare
Pf6N2E2_5037 +0.3 1.6 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) compare
Pf6N2E2_4778 +0.3 2.5 Lysine 2-monooxygenase (EC 1.13.12.2) (from data) compare
Pf6N2E2_1162 +0.3 1.0 Transmembrane amino acid efflux protein compare
Pf6N2E2_3624 +0.3 2.4 Flagellar motor rotation protein MotB compare
Pf6N2E2_1683 +0.3 1.2 Fe2+-dicitrate sensor, membrane component compare
Pf6N2E2_2585 +0.3 2.2 Flagellar hook-length control protein FliK compare
Pf6N2E2_2513 +0.3 1.5 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_2628 +0.3 2.0 Flagellar basal-body rod protein FlgF compare
Pf6N2E2_1598 +0.3 1.6 Nitrate reductase cytochrome c550-type subunit compare
Pf6N2E2_2477 +0.3 0.9 ABC transporter ATP-binding protein YvcR compare


Specific Phenotypes

For 4 genes in this experiment

For stress Sodium acetate in Pseudomonas fluorescens FW300-N2E2

For stress Sodium acetate across organisms