Experiment set3IT079 for Acidovorax sp. GW101-3H11

Compare to:

LB with sodium fluoride 35 mM

200 most detrimental genes:

  gene name fitness t score description  
Ac3H11_4772 +3.3 15.2 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Ac3H11_1895 +2.3 16.2 hypothetical protein compare
Ac3H11_934 +2.0 15.0 Cell division trigger factor (EC 5.2.1.8) compare
Ac3H11_207 +1.9 11.4 FIG137360: hypothetical protein compare
Ac3H11_2038 +1.9 9.7 General secretion pathway protein G compare
Ac3H11_319 +1.8 2.9 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
Ac3H11_1044 +1.8 7.1 tRNA-Leu-TAG compare
Ac3H11_1453 +1.6 6.2 Preprotein translocase subunit SecG (TC 3.A.5.1.1) compare
Ac3H11_733 +1.6 9.7 serine/threonine protein kinase compare
Ac3H11_2032 +1.6 4.2 General secretion pathway protein M compare
Ac3H11_4541 +1.5 1.4 PhnG protein compare
Ac3H11_4061 +1.5 14.0 Cyanophycin synthase (EC 6.3.2.29)(EC 6.3.2.30) compare
Ac3H11_4633 +1.5 2.8 putative outer membrane autotransporter barrel compare
Ac3H11_4060 +1.5 13.1 Cyanophycin synthase (EC 6.3.2.29)(EC 6.3.2.30) compare
Ac3H11_4237 +1.5 7.2 hypothetical protein compare
Ac3H11_2036 +1.4 3.4 General secretion pathway protein I compare
Ac3H11_2029 +1.4 7.3 General secretion pathway protein E / Type II secretion cytoplasmic ATP binding protein (PulE, ATPase) compare
Ac3H11_3057 +1.4 3.0 hypothetical protein compare
Ac3H11_861 +1.4 9.2 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Ac3H11_2030 +1.4 8.6 General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD) compare
Ac3H11_2076 +1.4 6.3 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Ac3H11_2034 +1.4 3.8 General secretion pathway protein K compare
Ac3H11_4059 +1.3 11.9 Lipid A export ATP-binding/permease protein MsbA compare
Ac3H11_1248 +1.3 3.0 Protein serine/threonine phosphatase PrpC, regulation of stationary phase compare
Ac3H11_4058 +1.3 8.0 required for efflux of an amino acid polymer (from data) compare
Ac3H11_3687 +1.3 2.6 Urease accessory protein UreE compare
Ac3H11_4236 +1.2 7.0 Homoserine dehydrogenase (EC 1.1.1.3) compare
Ac3H11_2033 +1.2 4.9 General secretion pathway protein L compare
Ac3H11_3431 +1.2 2.3 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Ac3H11_2970 +1.2 6.5 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Ac3H11_4826 +1.2 4.8 Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) compare
Ac3H11_654 +1.1 9.2 Pyruvate kinase (EC 2.7.1.40) compare
Ac3H11_4054 +1.1 7.6 General secretion pathway protein F / Type II secretory pathway, component PulF compare
Ac3H11_3380 +1.1 1.7 transcriptional regulator, MarR family compare
Ac3H11_1268 +1.1 1.7 DNA topoisomerase III, Burkholderia type (EC 5.99.1.2) compare
Ac3H11_2101 +1.1 5.0 Proposed lipoate regulatory protein YbeD compare
Ac3H11_437 +1.1 5.8 Transcription elongation factor GreA compare
Ac3H11_483 +1.0 1.8 Thioredoxin compare
Ac3H11_152 +1.0 1.6 hypothetical protein compare
Ac3H11_4092 +1.0 1.5 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
Ac3H11_708 +1.0 7.9 Glutamate--cysteine ligase (EC 6.3.2.2), divergent, of Alpha- and Beta-proteobacteria type compare
Ac3H11_1841 +1.0 5.7 Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) compare
Ac3H11_4198 +1.0 1.1 hypothetical protein compare
Ac3H11_4827 +1.0 7.9 Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) compare
Ac3H11_3365 +1.0 8.6 Glycosyl transferase, group 1 compare
Ac3H11_3451 +1.0 2.5 LSU ribosomal protein L25p compare
Ac3H11_4823 +1.0 8.3 Peptide/opine/nickel uptake family ABC transporter, periplasmic substrate-binding protein compare
Ac3H11_2198 +1.0 2.2 hypothetical protein compare
Ac3H11_2891 +0.9 1.2 hypothetical protein compare
Ac3H11_4632 +0.9 5.9 General secretion pathway protein A compare
Ac3H11_2035 +0.9 1.2 General secretion pathway protein J compare
Ac3H11_2899 +0.9 2.2 Probable LysR-family transcriptional regulator compare
Ac3H11_3021 +0.9 1.3 2-hydroxychromene-2-carboxylate isomerase compare
Ac3H11_829 +0.9 3.6 hypothetical protein compare
Ac3H11_1240 +0.9 1.7 hypothetical protein compare
Ac3H11_778 +0.9 3.2 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Ac3H11_3599 +0.8 1.6 Response regulator compare
Ac3H11_1184 +0.8 2.2 4-carboxy-4-hydroxy-2-oxoadipate aldolase (EC 4.1.3.17) compare
Ac3H11_2160 +0.8 1.4 sensory box histidine kinase/response regulator compare
Ac3H11_4824 +0.8 6.0 Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1) compare
Ac3H11_1567 +0.8 1.6 Probable transmembrane protein compare
Ac3H11_4202 +0.8 1.3 hypothetical protein compare
Ac3H11_1175 +0.8 1.4 hypothetical protein compare
Ac3H11_4093 +0.8 6.8 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
Ac3H11_2483 +0.8 1.9 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Ac3H11_4825 +0.8 5.6 Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) compare
Ac3H11_4621 +0.8 1.4 hypothetical protein compare
Ac3H11_2527 +0.8 3.8 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) compare
Ac3H11_2453 +0.8 1.5 hypothetical protein compare
Ac3H11_546 +0.8 5.7 ABC transporter ATP-binding protein compare
Ac3H11_1492 +0.8 1.9 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Ac3H11_4216 +0.8 1.4 hypothetical protein compare
Ac3H11_36 +0.8 1.8 hypothetical protein compare
Ac3H11_1321 +0.8 2.9 isochorismatase hydrolase compare
Ac3H11_1690 +0.8 3.6 Phosphate transport regulator (distant homolog of PhoU) compare
Ac3H11_3246 +0.8 1.8 hypothetical protein compare
Ac3H11_4864 +0.8 1.2 hypothetical protein compare
Ac3H11_2920 +0.7 5.4 FIG016425: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Ac3H11_1110 +0.7 5.8 Nucleoside ABC transporter, permease protein 1 compare
Ac3H11_709 +0.7 6.2 Kup system potassium uptake protein compare
Ac3H11_1278 +0.7 2.0 Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72) compare
Ac3H11_4194 +0.7 1.2 DNA polymerase-like protein PA0670 compare
Ac3H11_4898 +0.7 2.9 Calcium-binding EF-hand-containing protein compare
Ac3H11_524 +0.7 5.5 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like compare
Ac3H11_109 +0.7 2.0 predicted integral membrane protein compare
Ac3H11_2897 +0.7 2.1 Small uncharacterized protein Bpro_4170 compare
Ac3H11_1323 +0.7 2.6 Transcriptional regulator, AraC family compare
Ac3H11_3396 +0.7 4.6 ProQ: influences osmotic activation of compatible solute ProP compare
Ac3H11_4321 +0.7 1.7 hypothetical protein compare
Ac3H11_1842 +0.7 2.9 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) compare
Ac3H11_3146 +0.7 3.3 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Ac3H11_4686 +0.7 3.1 hypothetical protein compare
Ac3H11_1109 +0.7 2.4 ABC transporter ATP-binding protein compare
Ac3H11_1034 +0.7 1.9 Nitrite-sensitive transcriptional repressor NsrR compare
Ac3H11_3981 +0.7 3.0 UPF0301 protein YqgE compare
Ac3H11_3588 +0.7 1.2 hypothetical protein compare
Ac3H11_1869 +0.7 1.0 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-); Histidinol-phosphatase (EC 3.1.3.15) compare
Ac3H11_3004 +0.6 1.2 UPF0225 protein YchJ compare
Ac3H11_1300 +0.6 1.9 hypothetical protein compare
Ac3H11_926 +0.6 2.4 Phytoene desaturase, pro-zeta-carotene producing (EC 1.-.-.-) compare
Ac3H11_4647 +0.6 2.0 hypothetical protein compare
Ac3H11_3288 +0.6 1.3 Basic proline-rich protein precursor compare
Ac3H11_3846 +0.6 0.9 Protein containing domains DUF403 compare
Ac3H11_2392 +0.6 4.6 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Ac3H11_3502 +0.6 0.7 hypothetical protein compare
Ac3H11_2906 +0.6 2.1 hypothetical protein compare
Ac3H11_637 +0.6 3.1 protein of unknown function DUF1566 compare
Ac3H11_703 +0.6 2.0 FIG00538730: hypothetical protein compare
Ac3H11_457 +0.6 1.3 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Ac3H11_77 +0.6 1.0 Gsl3115 protein compare
Ac3H11_683 +0.6 1.6 HPr kinase/phosphorylase (EC 2.7.1.-) (EC 2.7.4.-) compare
Ac3H11_3586 +0.6 1.5 Transcriptional regulator, MerR family compare
Ac3H11_3417 +0.6 0.8 hypothetical protein compare
Ac3H11_4667 +0.6 2.2 ABC, transporter, ATP-binding protein compare
Ac3H11_2164 +0.6 1.2 hypothetical protein compare
Ac3H11_4097 +0.6 4.9 Oligopeptidase A (EC 3.4.24.70) compare
Ac3H11_4539 +0.6 1.0 Protein RcsF compare
Ac3H11_3421 +0.6 1.2 Lactoylglutathione lyase and related lyases compare
Ac3H11_1111 +0.6 4.2 Putative deoxyribose-specific ABC transporter, permease protein compare
Ac3H11_229 +0.6 2.6 Hemin transport protein HmuS compare
Ac3H11_3110 +0.6 2.7 hypothetical protein compare
Ac3H11_1615 +0.6 3.0 Sarcosine oxidase beta subunit (EC 1.5.3.1) compare
Ac3H11_4450 +0.6 1.1 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Ac3H11_1826 +0.6 2.7 Putative signal peptide protein compare
Ac3H11_1116 +0.6 3.7 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Ac3H11_1595 +0.6 4.0 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Ac3H11_1702 +0.6 1.9 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent compare
Ac3H11_3709 +0.6 2.8 Probable DNA repair exonuclease compare
Ac3H11_2471 +0.6 2.1 hypothetical protein compare
Ac3H11_2253 +0.6 1.4 Transcriptional regulator, MarR family compare
Ac3H11_1872 +0.5 1.8 Rhodanese domain protein compare
Ac3H11_711 +0.5 2.2 Glutathione synthetase (EC 6.3.2.3) compare
Ac3H11_1380 +0.5 2.4 hypothetical protein compare
Ac3H11_3627 +0.5 1.6 putative transmembrane protein compare
Ac3H11_2436 +0.5 1.0 hypothetical protein compare
Ac3H11_2812 +0.5 1.1 hypothetical protein compare
Ac3H11_1475 +0.5 2.2 Molybdenum cofactor biosynthesis protein MoaE compare
Ac3H11_841 +0.5 0.7 hypothetical protein compare
Ac3H11_3935 +0.5 2.3 FIG006163: hypothetical protein compare
Ac3H11_819 +0.5 1.6 transcriptional regulators, TraR/DksA family compare
Ac3H11_4852 +0.5 1.0 Protein of unknown function DUF218 compare
Ac3H11_213 +0.5 3.5 Fumarylacetoacetate hydrolase family protein compare
Ac3H11_827 +0.5 3.1 Magnesium and cobalt efflux protein CorC compare
Ac3H11_1815 +0.5 2.9 Phosphoglycerate mutase (EC 5.4.2.1) compare
Ac3H11_1728 +0.5 1.8 hypothetical protein compare
Ac3H11_2876 +0.5 1.4 hypothetical protein compare
Ac3H11_1614 +0.5 3.1 Opine oxidase subunit A compare
Ac3H11_1806 +0.5 2.5 Xanthine-guanine phosphoribosyltransferase (EC 2.4.2.22) compare
Ac3H11_1873 +0.5 0.6 hypothetical protein compare
Ac3H11_2301 +0.5 2.2 hypothetical protein compare
Ac3H11_228 +0.5 1.8 Periplasmic hemin-binding protein compare
Ac3H11_1984 +0.5 1.4 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Ac3H11_4546 +0.5 1.9 Phosphonates transport ATP-binding protein PhnK compare
Ac3H11_3553 +0.5 4.5 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) compare
Ac3H11_3741 +0.5 1.1 Mobile element protein compare
Ac3H11_3459 +0.5 3.6 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Ac3H11_938 +0.5 1.5 FIG00582348: hypothetical protein compare
Ac3H11_1942 +0.5 2.0 Phenylacetic acid degradation protein paaI compare
Ac3H11_3495 +0.5 2.1 hypothetical protein compare
Ac3H11_2443 +0.5 1.4 heat shock protein DnaJ domain protein compare
Ac3H11_2177 +0.5 1.5 Sensory histidine kinase QseC compare
Ac3H11_2821 +0.5 1.6 hypothetical protein compare
Ac3H11_1748 +0.5 1.4 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Ac3H11_2525 +0.5 2.8 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Ac3H11_988 +0.5 1.3 Vitamin B12 ABC transporter, B12-binding component BtuF compare
Ac3H11_1325 +0.5 0.9 Mg2+ and Co2+ transporters compare
Ac3H11_5 +0.5 1.9 putative inner membrane protein compare
Ac3H11_4119 +0.5 2.6 Integral membrane protein compare
Ac3H11_2654 +0.5 1.2 putative HNS-like transcription regulator protein compare
Ac3H11_2055 +0.5 2.6 Probable transcriptional regulator compare
Ac3H11_1205 +0.5 1.5 Two-component response regulator compare
Ac3H11_3101 +0.5 0.6 protein of unknown function DUF1234 compare
Ac3H11_2115 +0.5 2.9 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) compare
Ac3H11_3230 +0.5 1.8 Gluconate utilization system Gnt-I transcriptional repressor compare
Ac3H11_3500 +0.5 0.8 hypothetical protein compare
Ac3H11_3088 +0.5 1.9 hypothetical protein compare
Ac3H11_4547 +0.4 2.1 Phosphonates transport ATP-binding protein PhnL compare
Ac3H11_1319 +0.4 3.6 membrane protein, putative compare
Ac3H11_2349 +0.4 2.0 Transcriptional regulator, MarR family compare
Ac3H11_130 +0.4 1.4 hypothetical protein compare
Ac3H11_4878 +0.4 1.7 hypothetical protein compare
Ac3H11_2697 +0.4 0.6 hypothetical protein compare
Ac3H11_3857 +0.4 0.9 FIG136845: Rhodanese-related sulfurtransferase compare
Ac3H11_1208 +0.4 4.0 FIG005080: Possible exported protein compare
Ac3H11_4636 +0.4 2.8 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Ac3H11_1335 +0.4 1.4 hypothetical protein compare
Ac3H11_2080 +0.4 2.3 hypothetical protein compare
Ac3H11_1646 +0.4 1.4 Glutathione S-transferase (EC 2.5.1.18) compare
Ac3H11_1752 +0.4 1.7 COG0613, Predicted metal-dependent phosphoesterases (PHP family) compare
Ac3H11_952 +0.4 0.4 Cytochrome c551/c552 compare
Ac3H11_535 +0.4 1.4 Hypothetical protein DUF454 compare
Ac3H11_3305 +0.4 1.5 hypothetical protein compare
Ac3H11_268 +0.4 1.4 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Ac3H11_601 +0.4 0.8 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
Ac3H11_4430 +0.4 2.6 FIG01198927: hypothetical protein compare
Ac3H11_414 +0.4 0.7 Transcriptional regulator, AraC family compare
Ac3H11_3294 +0.4 2.9 Chromosome initiation inhibitor compare
Ac3H11_1282 +0.4 2.3 FOG: WD40-like repeat compare
Ac3H11_4963 +0.4 1.1 hypothetical protein compare
Ac3H11_4009 +0.4 2.1 Putative sensor-like histidine kinase YfhK compare


Specific Phenotypes

For 3 genes in this experiment

For stress sodium fluoride in Acidovorax sp. GW101-3H11

For stress sodium fluoride across organisms