Experiment set3IT079 for Acidovorax sp. GW101-3H11

LB with sodium fluoride 35 mM

Group: stress
Media: LB + sodium fluoride (35 mM)
Culturing: acidovorax_3H11_ML3a, 24 deep-well microplate; Multitron, Aerobic, at 30 (C), shaken=750 rpm
Growth: about 4.2 generations
By: Mark on 5/19/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride

Specific Phenotypes

For 3 genes in this experiment

For stress sodium fluoride in Acidovorax sp. GW101-3H11

For stress sodium fluoride across organisms

SEED Subsystems

Subsystem	#Specific
D-ribose utilization	1
Methionine Biosynthesis	1
Threonine and Homoserine Biosynthesis	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Glycine, serine and threonine metabolism
• Lysine biosynthesis
• Biosynthesis of plant hormones

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
L-homoserine biosynthesis	3	3	1
superpathway of L-threonine biosynthesis	6	6	1
superpathway of L-homoserine and L-methionine biosynthesis	8	6	1
superpathway of L-methionine biosynthesis (transsulfuration)	9	7	1
superpathway of S-adenosyl-L-methionine biosynthesis	9	7	1
superpathway of L-methionine biosynthesis (by sulfhydrylation)	12	12	1
superpathway of L-isoleucine biosynthesis I	13	13	1
superpathway of L-lysine, L-threonine and L-methionine biosynthesis II	15	13	1
superpathway of L-lysine, L-threonine and L-methionine biosynthesis I	18	16	1
aspartate superpathway	25	22	1