Experiment set3IT079 for Pseudomonas fluorescens SBW25-INTG
Growth at pH8 and carbon source Trisodium citrate dihydrate
Group: pHMedia: soilextract_PNNL_Prosser_PlotA_B_20191220 + Trisodium citrate dihydrate (10 mM) + Ammonium chloride (10 mM) + TAPS sodium salt (40 mM), pH=8
Culturing: PseudoSBW25_INTG_ML3, 96 deep-well microplate; 1 mL volume, Aerobic, at 30 (C)
By: Joshua Elmore on 1/6/20
Specific Phenotypes
For 15 genes in this experiment
For pH Trisodium citrate dihydrate in Pseudomonas fluorescens SBW25-INTG
For pH Trisodium citrate dihydrate across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Porphyrin and chlorophyll metabolism
- Ubiquinone and menaquinone biosynthesis
- Glutamate metabolism
- Arginine and proline metabolism
- Histidine metabolism
- Tyrosine metabolism
- Tryptophan metabolism
- Benzoxazinone biosynthesis
- Naphthalene and anthracene degradation
- Carotenoid biosynthesis - General
- Nitrogen metabolism
- Phenylpropanoid biosynthesis
- Flavonoid biosynthesis
- Anthocyanin biosynthesis
- Alkaloid biosynthesis I
- Insect hormone biosynthesis
- Biosynthesis of alkaloids derived from shikimate pathway
- Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-glutamate biosynthesis III | 1 | 1 | 1 |
| 5-(methoxycarbonylmethoxy)uridine biosynthesis | 3 | 1 | 1 |
| heme b biosynthesis II (oxygen-independent) | 4 | 3 | 1 |
| superpathway of heme b biosynthesis from uroporphyrinogen-III | 6 | 4 | 1 |
| L-glutamate and L-glutamine biosynthesis | 7 | 6 | 1 |
| 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic) | 9 | 3 | 1 |
| superpathway of bacteriochlorophyll a biosynthesis | 26 | 5 | 1 |