Experiment set3IT078 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Chloramphenicol 0.0025 mg/ml

200 most important genes:

  gene name fitness t score description  
AO353_22685 -3.5 -4.1 peroxidase compare
AO353_05130 -2.8 -2.7 anti-anti-sigma factor compare
AO353_14775 -2.8 -6.9 hypothetical protein compare
AO353_12105 -2.8 -6.6 peptidase S41 compare
AO353_04325 -2.5 -3.3 hypothetical protein compare
AO353_12500 -2.4 -2.7 shikimate kinase compare
AO353_06415 -2.2 -4.9 hypothetical protein compare
AO353_01410 -2.2 -3.5 ribonuclease E compare
AO353_00825 -2.2 -4.0 porin compare
AO353_26835 -2.1 -4.2 transcriptional regulator compare
AO353_07515 -2.1 -2.4 transporter compare
AO353_05150 -2.1 -5.4 ABC transporter ATP-binding protein compare
AO353_06710 -2.0 -2.0 riboflavin synthase subunit alpha compare
AO353_15410 -1.9 -2.5 hypothetical protein compare
AO353_03590 -1.8 -3.8 crossover junction endodeoxyribonuclease RuvC compare
AO353_09240 -1.8 -3.7 acetylglutamate kinase compare
AO353_00330 -1.8 -7.6 hypothetical protein compare
AO353_03615 -1.7 -3.2 cold-shock protein compare
AO353_03585 -1.7 -3.4 ATP-dependent DNA helicase RuvA compare
AO353_20185 -1.7 -5.6 DNA-binding protein compare
AO353_17295 -1.7 -12.4 multidrug transporter compare
AO353_14220 -1.7 -1.9 ribosomal large subunit pseudouridine synthase D compare
AO353_00495 -1.7 -2.4 DNA topoisomerase I compare
AO353_09320 -1.7 -7.8 ATP-dependent DNA helicase RecG compare
AO353_03580 -1.6 -3.8 ATP-dependent DNA helicase RuvB compare
AO353_09250 -1.6 -3.0 exodeoxyribonuclease III compare
AO353_04565 -1.6 -5.3 nucleoid-associated protein compare
AO353_05140 -1.6 -6.8 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_05135 -1.6 -7.6 toluene tolerance protein compare
AO353_11455 -1.5 -2.4 hypothetical protein compare
AO353_17290 -1.5 -5.1 multidrug transporter compare
AO353_20410 -1.5 -2.8 hypothetical protein compare
AO353_05145 -1.5 -4.9 ABC transporter permease compare
AO353_15900 -1.5 -2.4 GTP-binding protein compare
AO353_28700 -1.5 -3.0 hypothetical protein compare
AO353_17175 -1.5 -2.7 beta-ketoadipyl CoA thiolase compare
AO353_05420 -1.5 -2.0 peptide chain release factor 3 compare
AO353_18540 -1.5 -2.8 pseudouridine synthase compare
AO353_17300 -1.5 -5.9 antibiotic transporter compare
AO353_06050 -1.4 -5.5 exodeoxyribonuclease V subunit gamma compare
AO353_06040 -1.4 -3.0 exodeoxyribonuclease V subunit alpha compare
AO353_13925 -1.4 -2.1 XRE family transcriptional regulator compare
AO353_14150 -1.4 -1.8 peptidylprolyl isomerase compare
AO353_06045 -1.4 -5.6 exodeoxyribonuclease V subunit beta compare
AO353_09890 -1.4 -4.2 phosphate ABC transporter ATP-binding protein compare
AO353_15250 -1.4 -2.9 cytochrome B compare
AO353_09045 -1.3 -2.5 hypothetical protein compare
AO353_09315 -1.3 -6.4 LysR family transcriptional regulator compare
AO353_16805 -1.3 -4.7 recombinase RecA compare
AO353_26115 -1.3 -2.1 hypothetical protein compare
AO353_14085 -1.3 -3.1 hypothetical protein compare
AO353_21625 -1.3 -2.4 Fe/S biogenesis protein NfuA compare
AO353_06540 -1.2 -1.8 hypothetical protein compare
AO353_19280 -1.2 -1.3 hypothetical protein compare
AO353_07155 -1.2 -4.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_00430 -1.2 -3.2 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_02250 -1.2 -2.6 chorismate synthase compare
AO353_06585 -1.1 -4.8 hypothetical protein compare
AO353_09050 -1.1 -2.8 recombinase XerC compare
AO353_11610 -1.1 -3.2 glutamine ABC transporter ATP-binding protein compare
AO353_08980 -1.1 -2.6 heme biosynthesis operon protein HemX compare
AO353_01405 -1.1 -5.1 23S rRNA pseudouridylate synthase compare
AO353_11165 -1.1 -6.3 hypothetical protein compare
AO353_20170 -1.1 -3.6 trigger factor compare
AO353_11730 -1.1 -6.0 glutamate--cysteine ligase compare
AO353_12115 -1.1 -1.8 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_10930 -1.1 -5.2 DNA polymerase I compare
AO353_15185 -1.1 -3.4 ATPase compare
AO353_04190 -1.0 -1.4 glycerol-3-phosphate dehydrogenase compare
AO353_03795 -1.0 -3.0 fumarate hydratase compare
AO353_08015 -1.0 -4.7 5,10-methylenetetrahydrofolate reductase compare
AO353_05550 -1.0 -4.4 pseudouridine synthase compare
AO353_27455 -1.0 -3.3 hypothetical protein compare
AO353_14420 -1.0 -2.9 molecular chaperone DnaK compare
AO353_19770 -1.0 -1.8 peptidase compare
AO353_09905 -1.0 -5.6 phosphate-binding protein compare
AO353_04355 -1.0 -1.5 homoserine dehydrogenase compare
AO353_04175 -1.0 -3.0 glycerol uptake facilitator GlpF compare
AO353_11945 -1.0 -1.1 4-oxalocrotonate tautomerase compare
AO353_18890 -1.0 -3.3 cytochrome C compare
AO353_19145 -1.0 -3.1 protease HtpX compare
AO353_28935 -0.9 -2.3 ATPase compare
AO353_28320 -0.9 -1.8 aminopeptidase compare
AO353_15905 -0.9 -4.0 outer membrane protein assembly factor BamB compare
AO353_26945 -0.9 -1.6 transcriptional regulator compare
AO353_28295 -0.9 -1.4 GNAT family acetyltransferase compare
AO353_23880 -0.9 -2.9 ATPase compare
AO353_12945 -0.9 -4.7 toluene tolerance protein compare
AO353_07355 -0.9 -3.3 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_07610 -0.9 -1.0 hypothetical protein compare
AO353_26935 -0.9 -1.7 LysR family transcriptional regulator compare
AO353_06265 -0.9 -4.7 DEAD/DEAH box helicase compare
AO353_15730 -0.9 -2.3 hypothetical protein compare
AO353_11915 -0.8 -4.1 agmatine deiminase compare
AO353_23005 -0.8 -2.7 hypothetical protein compare
AO353_21935 -0.8 -1.7 nitrite reductase compare
AO353_18375 -0.8 -3.8 hypothetical protein compare
AO353_27650 -0.8 -2.7 cell division protein FtsK compare
AO353_21425 -0.8 -2.4 hypothetical protein compare
AO353_27695 -0.8 -4.2 isocitrate dehydrogenase compare
AO353_02190 -0.8 -5.5 hypothetical protein compare
AO353_12935 -0.8 -2.4 glycosyltransferase compare
AO353_05010 -0.8 -1.7 HopJ type III effector protein compare
AO353_13120 -0.8 -3.3 carbohydrate kinase compare
AO353_08165 -0.8 -1.8 pyrroline-5-carboxylate reductase compare
AO353_26840 -0.8 -2.1 RND transporter compare
AO353_14940 -0.8 -2.1 malate:quinone oxidoreductase compare
AO353_12915 -0.8 -3.9 carbamoyltransferase compare
AO353_15585 -0.8 -2.8 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
AO353_13225 -0.8 -1.4 50S ribosomal protein L9 compare
AO353_17380 -0.8 -2.2 hypothetical protein compare
AO353_23720 -0.8 -2.1 BatB protein compare
AO353_20800 -0.8 -1.3 hypothetical protein compare
AO353_03420 -0.8 -2.6 phosphogluconate dehydratase compare
AO353_15445 -0.8 -2.1 disulfide bond formation protein B compare
AO353_08685 -0.8 -3.8 N-acetylglutamate synthase compare
AO353_13720 -0.7 -5.5 arginine decarboxylase compare
AO353_02810 -0.7 -3.7 histidine kinase compare
AO353_18170 -0.7 -3.8 aspartyl beta-hydroxylase compare
AO353_14740 -0.7 -2.0 GTP-binding protein compare
AO353_11135 -0.7 -1.9 polyketide cyclase compare
AO353_02640 -0.7 -0.9 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_03710 -0.7 -1.6 formyltetrahydrofolate deformylase compare
AO353_26845 -0.7 -4.6 acriflavine resistance protein B compare
AO353_02440 -0.7 -4.9 peptidase S41 compare
AO353_05690 -0.7 -1.8 SsrA-binding protein compare
AO353_03250 -0.7 -0.7 gluconokinase compare
AO353_19750 -0.7 -1.3 diaminopimelate epimerase compare
AO353_13040 -0.7 -3.7 esterase compare
AO353_27550 -0.7 -1.4 hypothetical protein compare
AO353_13200 -0.7 -4.6 exoribonuclease R compare
AO353_12245 -0.7 -1.7 hypothetical protein compare
AO353_24935 -0.7 -3.3 cysteine sulfinate desulfinase compare
AO353_21110 -0.7 -1.6 hypothetical protein compare
AO353_04520 -0.7 -2.7 elongation factor 4 compare
AO353_22920 -0.7 -2.5 GntR family transcriptional regulator compare
AO353_10320 -0.7 -1.0 hypothetical protein compare
AO353_15480 -0.7 -1.2 hypothetical protein compare
AO353_02265 -0.7 -3.3 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific conserved
AO353_15460 -0.7 -3.3 cytochrome o ubiquinol oxidase subunit III compare
AO353_00460 -0.7 -1.5 TetR family transcriptional regulator compare
AO353_27090 -0.7 -1.3 hypothetical protein compare
AO353_08910 -0.7 -1.1 hypothetical protein compare
AO353_23045 -0.7 -2.2 hypothetical protein compare
AO353_09690 -0.7 -1.3 hypothetical protein compare
AO353_14370 -0.7 -3.1 glucose-6-phosphate isomerase compare
AO353_09840 -0.6 -2.4 chorismate--pyruvate lyase compare
AO353_28030 -0.6 -2.6 hypothetical protein compare
AO353_06480 -0.6 -1.4 50S rRNA methyltransferase compare
AO353_23620 -0.6 -1.6 hypothetical protein compare
AO353_00760 -0.6 -1.4 hypothetical protein compare
AO353_01035 -0.6 -1.7 hypothetical protein compare
AO353_07315 -0.6 -1.3 rRNA methyltransferase compare
AO353_25450 -0.6 -1.1 cyanate hydratase compare
AO353_03400 -0.6 -2.8 D-mannose isomerase (EC 5.3.1.7) (from data) compare
AO353_16855 -0.6 -2.0 tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA compare
AO353_23075 -0.6 -3.5 lysine transporter LysE compare
AO353_23425 -0.6 -2.0 3-demethylubiquinone-9 3-methyltransferase compare
AO353_10950 -0.6 -3.8 thiol:disulfide interchange protein compare
AO353_02005 -0.6 -0.9 hypothetical protein compare
AO353_20270 -0.6 -2.0 spore coat protein compare
AO353_09000 -0.6 -2.3 argininosuccinate lyase compare
AO353_13715 -0.6 -1.7 translation initiation factor Sui1 compare
AO353_10945 -0.6 -1.3 cytochrome C compare
AO353_18420 -0.6 -1.7 hypothetical protein compare
AO353_25965 -0.6 -2.4 hypothetical protein compare
AO353_13865 -0.6 -1.5 hypothetical protein compare
AO353_10505 -0.6 -1.7 hypothetical protein compare
AO353_24400 -0.6 -2.1 ACP phosphodiesterase compare
AO353_16740 -0.6 -1.7 phage tail protein compare
AO353_18505 -0.6 -1.2 translation initiation factor 2 compare
AO353_03430 -0.6 -1.6 methylglyoxal synthase compare
AO353_15875 -0.6 -2.2 23S rRNA (adenine(2503)-C2)-methyltransferase compare
AO353_23220 -0.6 -1.4 hypothetical protein compare
AO353_09010 -0.6 -1.3 hypothetical protein compare
AO353_13140 -0.6 -2.1 tRNA dimethylallyltransferase compare
AO353_19505 -0.6 -1.4 FAD-dependent oxidoreductase compare
AO353_06720 -0.6 -1.0 NrdR family transcriptional regulator compare
AO353_16635 -0.6 -1.9 pyocin R2, holin compare
AO353_12420 -0.6 -1.7 predicted FeS cluster maintenance protein (from data) compare
AO353_08350 -0.6 -2.9 hypothetical protein compare
AO353_23215 -0.6 -1.8 calpastatin compare
AO353_24745 -0.6 -0.8 hypothetical protein compare
AO353_18780 -0.6 -2.7 cobyrinic acid a,c-diamide synthase compare
AO353_21700 -0.6 -2.5 thioredoxin compare
AO353_12090 -0.6 -1.0 imidazole glycerol phosphate synthase subunit HisF compare
AO353_16375 -0.6 -1.4 hypothetical protein compare
AO353_26090 -0.6 -0.9 hypothetical protein compare
AO353_16915 -0.5 -3.7 hypothetical protein compare
AO353_00650 -0.5 -1.3 cytochrome biogenesis protein compare
AO353_20200 -0.5 -1.7 peptidylprolyl isomerase compare
AO353_28910 -0.5 -1.6 hypothetical protein compare
AO353_28210 -0.5 -1.4 2-haloalkanoic acid dehalogenase compare
AO353_12470 -0.5 -4.2 peptidase compare
AO353_00515 -0.5 -1.5 hypothetical protein compare
AO353_09900 -0.5 -3.4 phosphate ABC transporter permease compare
AO353_17410 -0.5 -1.0 arylsulfate sulfotransferase compare
AO353_14990 -0.5 -1.2 hypothetical protein compare
AO353_04420 -0.5 -1.3 Fe-S protein compare
AO353_19360 -0.5 -1.2 peroxiredoxin compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E3 in stress experiments

For stress Chloramphenicol across organisms