Experiment set3IT078 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x

200 most important genes:

  gene name fitness t score description  
H281DRAFT_05621 -7.8 -4.3 glutamate synthase (NADH) small subunit compare
H281DRAFT_04610 -5.8 -19.4 Fe-S oxidoreductase compare
H281DRAFT_04710 -5.6 -3.8 phosphoribosylformylglycinamidine cyclo-ligase compare
H281DRAFT_06264 -5.5 -5.8 glutamate 5-kinase compare
H281DRAFT_03926 -5.4 -8.9 phosphoserine aminotransferase apoenzyme compare
H281DRAFT_05714 -5.4 -2.8 anthranilate synthase, component II compare
H281DRAFT_00194 -5.4 -3.4 argininosuccinate lyase compare
H281DRAFT_02004 -4.9 -4.8 phosphoglycerate mutase compare
H281DRAFT_04922 -4.8 -3.3 iron complex transport system permease protein compare
H281DRAFT_00909 -4.5 -5.3 phosphoribosylformylglycinamidine synthase compare
H281DRAFT_04679 -4.4 -6.4 pyrroline-5-carboxylate reductase compare
H281DRAFT_06060 -4.4 -7.8 amidophosphoribosyltransferase compare
H281DRAFT_00176 -4.2 -2.3 outer membrane lipoprotein carrier protein compare
H281DRAFT_00286 -4.2 -3.6 transaldolase compare
H281DRAFT_04278 -4.1 -9.8 6-phosphogluconate dehydratase compare
H281DRAFT_00453 -3.9 -4.5 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL compare
H281DRAFT_04119 -3.9 -6.9 ornithine carbamoyltransferase compare
H281DRAFT_04120 -3.8 -7.6 argininosuccinate synthase compare
H281DRAFT_00608 -3.6 -9.4 UTP--GlnB (protein PII) uridylyltransferase, GlnD compare
H281DRAFT_05620 -3.5 -16.7 glutamate synthase (NADH) large subunit compare
H281DRAFT_04974 -3.4 -5.6 aromatic-amino-acid transaminase compare
H281DRAFT_04388 -3.4 -1.5 trehalose 6-phosphatase (EC 3.1.3.12) compare
H281DRAFT_01927 -3.2 -13.1 RNA polymerase, sigma 54 subunit, RpoN/SigL compare
H281DRAFT_06068 -3.2 -4.5 phosphoribosylanthranilate isomerase compare
H281DRAFT_03925 -3.2 -7.6 chorismate mutase compare
H281DRAFT_06067 -3.2 -9.7 tryptophan synthase, beta chain compare
H281DRAFT_02065 -3.2 -2.2 rfaE bifunctional protein, domain II compare
H281DRAFT_04722 -3.1 -4.5 Cell division and transport-associated protein TolQ compare
H281DRAFT_06315 -3.1 -2.3 glyceraldehyde-3-phosphate dehydrogenase (NAD+) compare
H281DRAFT_05713 -3.0 -5.2 anthranilate phosphoribosyltransferase compare
H281DRAFT_00197 -3.0 -10.7 Phosphoenolpyruvate carboxylase, type 1 compare
H281DRAFT_06073 -3.0 -4.8 3-isopropylmalate dehydratase, small subunit compare
H281DRAFT_04082 -2.8 -5.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
H281DRAFT_06480 -2.6 -2.4 arginine succinyltransferase compare
H281DRAFT_05801 -2.6 -5.2 5,10-methylenetetrahydrofolate reductase (NAD(P)) compare
H281DRAFT_00395 -2.6 -7.5 hydroxymethylpyrimidine synthase compare
H281DRAFT_00116 -2.6 -1.4 phosphoadenylylsulfate reductase (thioredoxin) compare
H281DRAFT_02297 -2.6 -6.4 Cd2+/Zn2+-exporting ATPase compare
H281DRAFT_00860 -2.5 -2.5 phosphoserine phosphatase compare
H281DRAFT_05715 -2.4 -12.4 anthranilate synthase, component I compare
H281DRAFT_06075 -2.2 -6.8 3-isopropylmalate dehydratase, large subunit compare
H281DRAFT_05712 -2.2 -3.5 indole-3-glycerol phosphate synthase compare
H281DRAFT_06046 -2.2 -1.5 serine/threonine protein phosphatase 1 compare
H281DRAFT_00117 -2.1 -7.1 sulfate adenylyltransferase subunit 2 compare
H281DRAFT_01025 -2.1 -1.8 transcriptional regulator, MarR family compare
H281DRAFT_06072 -2.1 -7.1 3-isopropylmalate dehydrogenase compare
H281DRAFT_01614 -2.1 -1.6 hypothetical protein compare
H281DRAFT_00118 -2.0 -4.3 sulfate adenylyltransferase subunit 1 compare
H281DRAFT_01749 -2.0 -1.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_03023 -1.9 -1.5 Protein of unknown function (DUF2866) compare
H281DRAFT_02287 -1.9 -2.0 PKHD-type hydroxylase compare
H281DRAFT_04243 -1.9 -3.5 magnesium and cobalt transporter compare
H281DRAFT_04553 -1.8 -3.3 ketol-acid reductoisomerase compare
H281DRAFT_04719 -1.8 -3.8 TolB protein compare
H281DRAFT_03072 -1.8 -5.4 Signal transduction histidine kinase compare
H281DRAFT_05983 -1.8 -1.8 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_01125 -1.8 -2.0 protein of unknown function (DUF2760) compare
H281DRAFT_04968 -1.8 -2.7 Hemin uptake protein hemP compare
H281DRAFT_01706 -1.8 -1.7 transcriptional regulator, MarR family compare
H281DRAFT_04721 -1.7 -1.5 Cell division and transport-associated protein TolR compare
H281DRAFT_04923 -1.7 -2.9 iron complex transport system substrate-binding protein compare
H281DRAFT_00896 -1.7 -2.4 ATP-dependent Clp protease proteolytic subunit ClpP compare
H281DRAFT_00143 -1.7 -4.5 L-threonine O-3-phosphate decarboxylase compare
H281DRAFT_00706 -1.7 -1.4 outer membrane protein compare
H281DRAFT_00808 -1.7 -3.1 Uncharacterized conserved protein, contains Mth938-like domain compare
H281DRAFT_02214 -1.7 -10.1 homoserine O-acetyltransferase compare
H281DRAFT_00757 -1.7 -1.6 hypothetical protein compare
H281DRAFT_00967 -1.7 -5.8 assimilatory nitrite reductase (NAD(P)H) large subunit precursor (EC 1.7.1.4) conserved
H281DRAFT_00842 -1.7 -3.4 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
H281DRAFT_00454 -1.6 -2.1 nitrogen metabolism transcriptional regulator, NtrC, Fis family compare
H281DRAFT_00114 -1.6 -3.7 sulfite reductase (NADPH) beta subunit compare
H281DRAFT_00120 -1.6 -2.9 sirohydrochlorin cobaltochelatase compare
H281DRAFT_00653 -1.6 -1.6 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_05085 -1.6 -3.4 DNA helicase/exodeoxyribonuclease V, gamma subunit compare
H281DRAFT_04889 -1.6 -1.3 hypothetical protein compare
H281DRAFT_06322 -1.6 -2.6 LPS-assembly lipoprotein compare
H281DRAFT_04051 -1.5 -2.0 transcriptional regulator, RpiR family compare
H281DRAFT_04934 -1.5 -1.1 Sensors of blue-light using FAD compare
H281DRAFT_01935 -1.5 -5.4 Tetratricopeptide repeat-containing protein compare
H281DRAFT_02863 -1.5 -3.8 precorrin-3B synthase compare
H281DRAFT_06521 -1.5 -1.4 magnesium chelatase subunit ChlD-like protein compare
H281DRAFT_06059 -1.5 -5.5 O-succinylhomoserine sulfhydrylase compare
H281DRAFT_00966 -1.5 -2.7 uroporphyrinogen-III C-methyltransferase (EC 2.1.1.107) compare
H281DRAFT_00812 -1.5 -2.9 molybdopterin molybdotransferase compare
H281DRAFT_02080 -1.4 -8.5 cell division protein FtsN compare
H281DRAFT_06039 -1.4 -3.6 molybdate transport system ATP-binding protein compare
H281DRAFT_00665 -1.4 -4.5 assimilatory nitrate reductase (NADH) alpha subunit apoprotein (EC 1.7.1.1) compare
H281DRAFT_00165 -1.4 -4.8 glucose-6-phosphate 1-dehydrogenase compare
H281DRAFT_02865 -1.4 -5.8 precorrin-2 C20-methyltransferase /cobalt-factor II C20-methyltransferase compare
H281DRAFT_02201 -1.4 -1.9 hypothetical protein compare
H281DRAFT_02926 -1.4 -5.9 diguanylate cyclase/phosphodiesterase compare
H281DRAFT_06272 -1.4 -1.1 uncharacterized protein compare
H281DRAFT_06065 -1.4 -4.7 tryptophan synthase, alpha chain compare
H281DRAFT_02813 -1.4 -1.8 Uncharacterized protein conserved in bacteria compare
H281DRAFT_04337 -1.4 -2.1 molybdenum cofactor guanylyltransferase (EC 2.7.7.77) compare
H281DRAFT_04924 -1.4 -2.9 iron complex outermembrane recepter protein compare
H281DRAFT_05905 -1.4 -1.7 hypothetical protein compare
H281DRAFT_00169 -1.3 -2.2 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_01163 -1.3 -3.9 hypothetical protein compare
H281DRAFT_00851 -1.3 -8.1 polyhydroxyalkanoate synthase compare
H281DRAFT_06037 -1.3 -2.0 molybdate transport system substrate-binding protein compare
H281DRAFT_05645 -1.3 -3.9 phospholipid transport system substrate-binding protein compare
H281DRAFT_04302 -1.3 -2.1 molybdopterin adenylyltransferase compare
H281DRAFT_06523 -1.3 -4.3 protoporphyrin IX magnesium-chelatase (EC 6.6.1.1) compare
H281DRAFT_04635 -1.3 -1.1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) compare
H281DRAFT_04008 -1.3 -3.1 RNAse PH compare
H281DRAFT_01883 -1.3 -1.0 putative addiction module antidote protein, CC2985 family compare
H281DRAFT_00468 -1.2 -4.5 dihydrolipoamide dehydrogenase compare
H281DRAFT_06474 -1.2 -1.3 amino acid ABC transporter membrane protein 1, PAAT family compare
H281DRAFT_01257 -1.2 -1.7 Catechol 2,3-dioxygenase compare
H281DRAFT_02864 -1.2 -3.0 precorrin-8X methylmutase compare
H281DRAFT_06529 -1.2 -2.5 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
H281DRAFT_03611 -1.2 -1.7 hopanoid-associated phosphorylase compare
H281DRAFT_04929 -1.2 -2.3 hypothetical protein compare
H281DRAFT_01042 -1.2 -1.9 glycosyltransferase, MSMEG_0565 family compare
H281DRAFT_02756 -1.2 -1.3 Cupin domain protein compare
H281DRAFT_06266 -1.2 -2.9 putative (di)nucleoside polyphosphate hydrolase compare
H281DRAFT_05641 -1.2 -2.2 phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein compare
H281DRAFT_04064 -1.2 -2.8 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
H281DRAFT_01235 -1.2 -2.9 DNA-binding protein H-NS compare
H281DRAFT_00139 -1.2 -3.0 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase compare
H281DRAFT_06008 -1.1 -4.0 RNA polymerase, sigma 70 subunit, RpoD compare
H281DRAFT_02966 -1.1 -1.6 nucleoside-binding protein compare
H281DRAFT_03314 -1.1 -1.1 hypothetical protein compare
H281DRAFT_02912 -1.1 -1.7 Glycine zipper compare
H281DRAFT_02859 -1.1 -2.6 precorrin-6A reductase (EC 1.3.1.54) compare
H281DRAFT_01053 -1.1 -1.0 3-hydroxyisobutyrate dehydrogenase compare
H281DRAFT_01429 -1.1 -3.7 Glycosyltransferases involved in cell wall biogenesis compare
H281DRAFT_02866 -1.1 -3.1 precorrin-3 methyltransferase (EC 2.1.1.131) compare
H281DRAFT_03981 -1.1 -4.2 Uncharacterized membrane protein compare
H281DRAFT_05022 -1.1 -1.5 two component transcriptional regulator, LuxR family compare
H281DRAFT_01005 -1.1 -1.5 PilZ domain-containing protein compare
H281DRAFT_00140 -1.1 -3.4 cobalamin-5'-phosphate synthase compare
H281DRAFT_05021 -1.1 -1.4 Response regulator compare
H281DRAFT_00444 -1.1 -1.8 N-acetylglutamate synthase compare
H281DRAFT_05609 -1.1 -1.3 penicillin-binding protein 1A compare
H281DRAFT_03749 -1.1 -1.1 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_00152 -1.1 -1.1 Protein of unknown function (DUF3460) compare
H281DRAFT_06530 -1.1 -1.8 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) (EC 6.3.5.9)/cobyrinate a,c-diamide synthase (EC 6.3.5.11) compare
H281DRAFT_03244 -1.0 -2.1 hypothetical protein compare
H281DRAFT_03144 -1.0 -2.7 putative phosphoesterase compare
H281DRAFT_00163 -1.0 -4.3 glucokinase /transcriptional regulator, RpiR family compare
H281DRAFT_00840 -1.0 -4.4 5'-nucleotidase /3'-nucleotidase /exopolyphosphatase compare
H281DRAFT_01067 -1.0 -1.3 NitT/TauT family transport system ATP-binding protein compare
H281DRAFT_04875 -1.0 -1.6 Nucleoside-diphosphate-sugar epimerase compare
H281DRAFT_00969 -1.0 -2.2 Type IV pili methyl-accepting chemotaxis transducer N-term compare
H281DRAFT_06441 -1.0 -1.5 cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein (EC 1.10.3.10) compare
H281DRAFT_03795 -1.0 -1.4 hypothetical protein compare
H281DRAFT_06341 -1.0 -2.5 glyoxylate/hydroxypyruvate reductase A compare
H281DRAFT_05755 -1.0 -1.3 flagellar biosynthesis protein FlhG compare
H281DRAFT_00146 -1.0 -3.4 adenosylcobyric acid synthase (glutamine-hydrolysing) compare
H281DRAFT_04680 -1.0 -1.7 hypothetical protein compare
H281DRAFT_01184 -1.0 -1.2 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_06163 -1.0 -1.0 hypothetical protein compare
H281DRAFT_06028 -1.0 -1.3 hypothetical protein compare
H281DRAFT_05743 -1.0 -2.5 CheW protein compare
H281DRAFT_04372 -1.0 -3.6 hypothetical protein compare
H281DRAFT_00167 -1.0 -1.6 carbohydrate ABC transporter membrane protein 1, CUT1 family compare
H281DRAFT_00168 -1.0 -2.9 carbohydrate ABC transporter membrane protein 2, CUT1 family compare
H281DRAFT_06180 -1.0 -2.4 hypothetical protein compare
H281DRAFT_03228 -1.0 -2.7 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_01071 -1.0 -0.9 muconolactone delta-isomerase (EC 5.3.3.4) compare
H281DRAFT_02008 -1.0 -3.2 phosphocarrier protein compare
H281DRAFT_00603 -1.0 -1.7 ZipA, C-terminal FtsZ-binding domain compare
H281DRAFT_06524 -1.0 -5.6 cobaltochelatase CobN subunit compare
H281DRAFT_05092 -1.0 -1.4 hypothetical protein compare
H281DRAFT_00416 -0.9 -2.9 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_00340 -0.9 -2.8 glutamine amidotransferase compare
H281DRAFT_04997 -0.9 -0.9 AraC-type DNA-binding protein compare
H281DRAFT_05717 -0.9 -4.6 ribulose-5-phosphate 3-epimerase compare
H281DRAFT_02741 -0.9 -1.3 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_00841 -0.9 -1.6 hypothetical protein compare
H281DRAFT_00409 -0.9 -1.4 bacterioferritin compare
H281DRAFT_05351 -0.9 -1.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_05248 -0.9 -1.2 hypothetical protein compare
H281DRAFT_00958 -0.9 -1.6 Membrane protein involved in the export of O-antigen and teichoic acid compare
H281DRAFT_03006 -0.9 -3.9 transcriptional regulator, GntR family compare
H281DRAFT_04356 -0.9 -1.7 anti sigma-E protein, RseA compare
H281DRAFT_04826 -0.9 -2.0 rhamnosyltransferase compare
H281DRAFT_00145 -0.9 -2.2 adenosylcobinamide kinase /adenosylcobinamide-phosphate guanylyltransferase compare
H281DRAFT_02137 -0.9 -2.1 type I restriction enzyme M protein compare
H281DRAFT_04338 -0.9 -3.7 cyclic pyranopterin monophosphate synthase subunit MoaA compare
H281DRAFT_03576 -0.9 -1.1 two-component system, chemotaxis family, response regulator CheY compare
H281DRAFT_01968 -0.9 -3.3 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
H281DRAFT_00773 -0.9 -2.0 nodulation factor export ABC transporter ATP-binding protein NodI compare
H281DRAFT_00506 -0.9 -1.7 Zn-dependent protease (includes SpoIVFB) compare
H281DRAFT_02181 -0.9 -1.5 carbon-monoxide dehydrogenase small subunit compare
H281DRAFT_05376 -0.9 -1.5 hypothetical protein compare
H281DRAFT_04714 -0.9 -3.3 small conductance mechanosensitive channel compare
H281DRAFT_05667 -0.9 -4.5 serine protease DegQ compare
H281DRAFT_02888 -0.9 -2.1 hypothetical protein compare
H281DRAFT_03047 -0.9 -1.1 protein of unknown function (DUF4148) compare
H281DRAFT_06581 -0.9 -1.9 NADP-dependent 3-hydroxy acid dehydrogenase YdfG compare
H281DRAFT_01138 -0.9 -2.5 2-furoate---CoA ligase compare
H281DRAFT_06295 -0.9 -1.5 2-keto-3-deoxy-phosphogalactonate aldolase compare
H281DRAFT_06567 -0.9 -0.9 hypothetical protein compare
H281DRAFT_03287 -0.9 -1.1 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_05293 -0.9 -1.1 amino acid ABC transporter ATP-binding protein, PAAT family compare
H281DRAFT_00518 -0.9 -1.7 Putative negative regulator of RcsB-dependent stress response compare
H281DRAFT_03640 -0.9 -2.2 transcriptional regulator, IclR family compare


Specific Phenotypes

For 1 genes in this experiment

For supernatant Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Paraburkholderia bryophila 376MFSha3.1

For supernatant Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms