Experiment set3IT078 for Burkholderia phytofirmans PsJN

Compare to:

Ammonium chloride nitrogen source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS16835 -7.6 -5.2 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS33915 -7.5 -5.2 isopropylmalate isomerase compare
BPHYT_RS17690 -7.4 -8.8 imidazole glycerol phosphate synthase compare
BPHYT_RS14915 -7.3 -5.1 phosphoserine aminotransferase compare
BPHYT_RS17680 -7.3 -4.5 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS17400 -7.2 -5.0 anthranilate phosphoribosyltransferase compare
BPHYT_RS09500 -7.1 -4.9 glucose-6-phosphate isomerase compare
BPHYT_RS04725 -7.1 -6.9 sulfite reductase compare
BPHYT_RS18320 -7.0 -9.6 orotate phosphoribosyltransferase compare
BPHYT_RS33900 -6.9 -8.2 3-isopropylmalate dehydrogenase compare
BPHYT_RS14845 -6.8 -4.7 cysteine synthase compare
BPHYT_RS17685 -6.8 -6.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS15915 -6.8 -4.7 ornithine carbamoyltransferase compare
BPHYT_RS33880 -6.7 -8.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS16245 -6.7 -4.6 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS17855 -6.7 -11.1 glutamate synthase compare
BPHYT_RS14895 -6.6 -4.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS06555 -6.6 -7.9 ketol-acid reductoisomerase compare
BPHYT_RS15075 -6.6 -3.5 dihydrokaempferol 4-reductase compare
BPHYT_RS03150 -6.6 -11.9 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS33865 -6.6 -6.4 tryptophan synthase alpha chain compare
BPHYT_RS33835 -6.5 -8.9 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS06545 -6.4 -7.7 acetolactate synthase compare
BPHYT_RS04740 -6.4 -4.4 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS17395 -6.3 -2.0 anthranilate synthase subunit II compare
BPHYT_RS04965 -6.3 -7.4 ATP-binding protein compare
BPHYT_RS13705 -6.2 -4.7 chorismate synthase compare
BPHYT_RS17890 -6.1 -3.3 shikimate kinase compare
BPHYT_RS14910 -5.9 -9.7 chorismate mutase compare
BPHYT_RS15920 -5.9 -11.3 argininosuccinate synthase compare
BPHYT_RS02610 -5.9 -4.3 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS05030 -5.8 -3.8 sugar ABC transporter permease compare
BPHYT_RS33875 -5.8 -6.9 tryptophan synthase subunit alpha compare
BPHYT_RS17390 -5.8 -17.1 anthranilate synthase subunit I compare
BPHYT_RS18705 -5.7 -3.1 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS01595 -5.7 -12.4 homoserine O-acetyltransferase compare
BPHYT_RS12530 -5.7 -5.2 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS16270 -5.7 -3.9 phosphoglycerate kinase compare
BPHYT_RS12985 -5.7 -3.4 amino acid acetyltransferase compare
BPHYT_RS04955 -5.6 -1.8 methionyl-tRNA synthetase compare
BPHYT_RS17675 -5.6 -2.5 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS14190 -5.6 -7.7 carbamoyl phosphate synthase large subunit compare
BPHYT_RS01590 -5.6 -5.4 methionine biosynthesis protein MetW compare
BPHYT_RS10100 -5.6 -3.9 dihydroxy-acid dehydratase compare
BPHYT_RS08955 -5.6 -3.9 homoserine dehydrogenase compare
BPHYT_RS09515 -5.5 -3.8 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS08960 -5.3 -2.8 threonine synthase compare
BPHYT_RS33645 -5.3 -6.3 homoserine kinase compare
BPHYT_RS03640 -5.3 -3.6 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS03645 -5.2 -3.9 tRNA dimethylallyltransferase compare
BPHYT_RS17885 -5.2 -6.9 3-dehydroquinate synthase compare
BPHYT_RS06405 -5.1 -6.5 phosphoribosylamine--glycine ligase compare
BPHYT_RS06610 -5.1 -2.2 triosephosphate isomerase compare
BPHYT_RS05225 -5.1 -8.1 phosphoenolpyruvate carboxylase compare
BPHYT_RS02590 -5.0 -6.7 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS16675 -4.9 -3.4 dihydroorotase compare
BPHYT_RS16735 -4.8 -5.3 phosphogluconate dehydratase compare
BPHYT_RS05010 -4.7 -5.6 RpiR family transcriptional regulator compare
BPHYT_RS12845 -4.7 -14.3 ATPase compare
BPHYT_RS05960 -4.7 -6.9 endoribonuclease L-PSP compare
BPHYT_RS17700 -4.7 -5.5 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS03535 -4.6 -7.8 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS06900 -4.5 -6.9 aspartate aminotransferase compare
BPHYT_RS17670 -4.5 -4.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS05035 -4.4 -6.1 sugar ABC transporter permease compare
BPHYT_RS16255 -4.4 -3.0 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS06685 -4.4 -2.4 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS04720 -4.3 -6.9 transcriptional regulator compare
BPHYT_RS16905 -4.3 -6.8 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS06045 -4.3 -7.9 transaldolase compare
BPHYT_RS23230 -4.2 -1.8 histidine kinase compare
BPHYT_RS03725 -4.1 -2.1 serine hydroxymethyltransferase compare
BPHYT_RS16840 -4.1 -4.8 transketolase compare
BPHYT_RS33920 -4.1 -10.0 type II citrate synthase compare
BPHYT_RS17715 -4.0 -7.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS33840 -4.0 -4.4 amidophosphoribosyltransferase compare
BPHYT_RS14195 -3.8 -4.3 carbamoyl phosphate synthase small subunit compare
BPHYT_RS17405 -3.7 -1.6 indole-3-glycerol phosphate synthase compare
BPHYT_RS04730 -3.6 -3.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS23940 -3.4 -2.0 GntR family transcriptional regulator compare
BPHYT_RS15670 -3.4 -8.9 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS05020 -3.3 -5.3 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS12465 -3.3 -4.3 inositol monophosphatase compare
BPHYT_RS05025 -3.1 -3.6 sugar ABC transporter substrate-binding protein compare
BPHYT_RS03495 -3.0 -7.8 hypothetical protein compare
BPHYT_RS03625 -3.0 -11.3 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS02905 -3.0 -17.1 RNA polymerase subunit sigma-54 compare
BPHYT_RS18340 -2.8 -3.0 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS36275 -2.8 -3.8 hypothetical protein compare
BPHYT_RS13220 -2.7 -7.2 phosphomethylpyrimidine synthase compare
BPHYT_RS06530 -2.7 -1.5 membrane protein compare
BPHYT_RS27175 -2.7 -1.2 DNA-binding protein compare
BPHYT_RS08565 -2.7 -1.1 dihydroorotate dehydrogenase compare
BPHYT_RS17380 -2.6 -8.8 ribulose-phosphate 3-epimerase compare
BPHYT_RS04920 -2.5 -2.1 aspartate 1-decarboxylase compare
BPHYT_RS17520 -2.5 -3.9 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS10645 -2.5 -1.7 cyanate hydratase compare
BPHYT_RS08850 -2.5 -2.3 transcriptional regulator compare
BPHYT_RS04745 -2.5 -4.3 sulfate adenylyltransferase compare
BPHYT_RS12840 -2.5 -3.1 pyruvate dehydrogenase compare
BPHYT_RS05620 -2.4 -1.6 CsbD family protein compare
BPHYT_RS29620 -2.2 -1.2 hypothetical protein compare
BPHYT_RS17095 -2.2 -3.0 proline--tRNA ligase compare
BPHYT_RS19565 -2.1 -8.2 gamma-glutamyl:cysteine ligase compare
BPHYT_RS09145 -2.0 -5.0 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS12935 -1.9 -9.1 chemotaxis protein CheY compare
BPHYT_RS21495 -1.9 -1.1 ABC transporter compare
BPHYT_RS02010 -1.9 -1.9 copper homeostasis protein CutC compare
BPHYT_RS05040 -1.9 -2.8 sugar ABC transporter ATPase compare
BPHYT_RS12150 -1.8 -9.7 PII uridylyl-transferase compare
BPHYT_RS17920 -1.8 -1.5 protein CyaY compare
BPHYT_RS11310 -1.7 -1.2 LysR family transcriptional regulator compare
BPHYT_RS02690 -1.7 -7.3 protoheme IX farnesyltransferase compare
BPHYT_RS19570 -1.7 -9.9 sodium/hydrogen exchanger compare
BPHYT_RS06375 -1.6 -3.7 ribonuclease compare
BPHYT_RS17100 -1.6 -5.8 RNA pyrophosphohydrolase compare
BPHYT_RS16975 -1.6 -4.2 shikimate 5-dehydrogenase compare
BPHYT_RS03570 -1.6 -7.4 heat-inducible transcription repressor HrcA compare
BPHYT_RS08525 -1.6 -0.8 SAM-dependent methyltransferase compare
BPHYT_RS09905 -1.6 -1.5 hypothetical protein compare
BPHYT_RS02135 -1.6 -1.9 glyoxylate reductase compare
BPHYT_RS14400 -1.6 -2.5 anti-sigma factor compare
BPHYT_RS24210 -1.6 -2.6 urea transporter compare
BPHYT_RS30750 -1.6 -1.7 GntR family transcriptional regulator compare
BPHYT_RS08950 -1.6 -3.3 aminotransferase compare
BPHYT_RS12725 -1.5 -9.0 regulator compare
BPHYT_RS35480 -1.5 -2.1 salicylyl-CoA 5-hydroxylase compare
BPHYT_RS06065 -1.5 -5.6 cytochrome C compare
BPHYT_RS16135 -1.4 -3.8 ABC transporter ATP-binding protein compare
BPHYT_RS15620 -1.4 -2.8 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS07960 -1.4 -1.6 hypothetical protein compare
BPHYT_RS22885 -1.4 -2.7 hypothetical protein compare
BPHYT_RS09315 -1.4 -0.8 chemotaxis protein CheY compare
BPHYT_RS24315 -1.4 -2.5 phosphoribosyltransferase compare
BPHYT_RS17240 -1.4 -1.3 cell division protein FtsW compare
BPHYT_RS14550 -1.3 -1.1 tRNA-Asn compare
BPHYT_RS06410 -1.3 -1.8 transcriptional regulator compare
BPHYT_RS26470 -1.3 -0.9 MFS transporter compare
BPHYT_RS26525 -1.3 -1.1 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS22485 -1.3 -2.4 NADP-dependent aryl-alcohol dehydrogenase compare
BPHYT_RS29920 -1.3 -0.8 hypothetical protein compare
BPHYT_RS00790 -1.3 -1.5 conjugal transfer protein TraF compare
BPHYT_RS26025 -1.3 -0.8 hypothetical protein compare
BPHYT_RS33870 -1.3 -2.6 DNA methylase N-4 compare
BPHYT_RS14900 -1.3 -2.0 prephenate dehydrogenase compare
BPHYT_RS08125 -1.3 -6.3 ATPase compare
BPHYT_RS02285 -1.2 -4.3 cell division protein compare
BPHYT_RS25560 -1.2 -1.3 RNA polymerase sigma factor compare
BPHYT_RS25470 -1.2 -1.1 alkylhydroperoxidase compare
BPHYT_RS10995 -1.2 -1.4 GntR family transcriptional regulator compare
BPHYT_RS05705 -1.2 -0.9 hypothetical protein compare
BPHYT_RS06990 -1.2 -1.5 membrane protein compare
BPHYT_RS23650 -1.2 -0.9 hypothetical protein compare
BPHYT_RS16340 -1.2 -4.2 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS09070 -1.2 -2.6 recombination protein RecR compare
BPHYT_RS02640 -1.2 -7.3 cytochrome C oxidase compare
BPHYT_RS23455 -1.2 -0.9 phosphorylase compare
BPHYT_RS30995 -1.2 -0.9 glucose-1-phosphate thymidylyltransferase compare
BPHYT_RS01660 -1.2 -1.8 hypothetical protein compare
BPHYT_RS16435 -1.2 -6.6 alcohol dehydrogenase compare
BPHYT_RS13645 -1.2 -8.0 threonine--tRNA ligase compare
BPHYT_RS06070 -1.2 -4.6 cytochrome C compare
BPHYT_RS16345 -1.2 -2.6 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS02650 -1.2 -1.2 membrane protein compare
BPHYT_RS16130 -1.2 -3.2 cation ABC transporter substrate-binding protein compare
BPHYT_RS02665 -1.1 -8.0 MFS transporter compare
BPHYT_RS19545 -1.1 -3.6 nuclear protein SET compare
BPHYT_RS16430 -1.1 -8.1 cytochrome C compare
BPHYT_RS10095 -1.1 -2.0 integrase compare
BPHYT_RS06435 -1.1 -1.5 hypothetical protein compare
BPHYT_RS04820 -1.1 -3.1 LysR family transcriptional regulator compare
BPHYT_RS33905 -1.1 -0.6 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS18415 -1.1 -2.6 hypothetical protein compare
BPHYT_RS02685 -1.1 -5.9 cytochrome C oxidase subunit I compare
BPHYT_RS14395 -1.1 -4.8 sugar dehydratase compare
BPHYT_RS09355 -1.1 -1.4 LysR family transcriptional regulator compare
BPHYT_RS32260 -1.1 -1.5 hypothetical protein compare
BPHYT_RS19305 -1.1 -4.3 ATP-dependent DNA helicase Rep compare
BPHYT_RS18660 -1.1 -2.3 hypothetical protein compare
BPHYT_RS29800 -1.1 -1.5 hypothetical protein compare
BPHYT_RS13605 -1.1 -0.9 tRNA-Pro compare
BPHYT_RS08965 -1.1 -2.2 molybdenum cofactor biosynthesis protein MoaA compare
BPHYT_RS07165 -1.1 -1.4 peptide ABC transporter permease compare
BPHYT_RS01455 -1.1 -0.7 peptide deformylase compare
BPHYT_RS20790 -1.1 -1.4 TetR family transcriptional regulator compare
BPHYT_RS06075 -1.1 -4.7 hypothetical protein compare
BPHYT_RS12925 -1.1 -0.8 exodeoxyribonuclease III compare
BPHYT_RS34410 -1.1 -1.2 hypothetical protein compare
BPHYT_RS02525 -1.1 -4.6 membrane protein compare
BPHYT_RS15650 -1.1 -6.3 quinolinate synthetase compare
BPHYT_RS32930 -1.1 -1.5 NADPH:quinone reductase and related Zn-dependent oxidoreductase-like protein compare
BPHYT_RS05730 -1.1 -3.3 hypothetical protein compare
BPHYT_RS20280 -1.1 -1.5 hypothetical protein compare
BPHYT_RS12590 -1.1 -1.2 dual-specificity RNA methyltransferase RlmN compare
BPHYT_RS25335 -1.1 -0.9 hypothetical protein compare
BPHYT_RS28830 -1.0 -1.0 LysR family transcriptional regulator compare
BPHYT_RS09155 -1.0 -3.6 3-ketoacyl-ACP reductase compare
BPHYT_RS14740 -1.0 -4.8 threonine-phosphate decarboxylase compare
BPHYT_RS28885 -1.0 -1.2 betaine-aldehyde dehydrogenase compare
BPHYT_RS01120 -1.0 -2.4 plasmid partitioning protein ParB compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in nitrogen source experiments

For nitrogen source Ammonium chloride across organisms