Experiment set3IT077 for Caulobacter crescentus NA1000

Compare to:

PYE with Gentamicin sulfate salt 0.0005 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CCNA_02030 +6.5 9.9 hypothetical protein compare
CCNA_02448 +6.3 22.8 hypothetical protein compare
CCNA_01059 +6.1 22.7 S-layer protein rsaA compare
CCNA_00011 +5.9 13.2 chaperone protein DnaJ compare
CCNA_02028 +5.9 22.4 NTF2 superfamily protein compare
CCNA_02026 +5.4 9.8 hypothetical protein compare
CCNA_02447 +5.2 18.8 PspA/IM30 family regulatory protein compare
CCNA_03043 +4.8 11.9 type IV pilin protein pilA compare
CCNA_03281 +4.5 31.9 AsnC-family transcriptional regulator compare
CCNA_02941 +4.3 13.2 transcription elongation factor greA compare
CCNA_00699 +4.3 32.1 LSU ribosomal protein L28P compare
CCNA_01712 +4.3 28.4 CopY/TcrY family transcriptional repressor compare
CCNA_00389 +4.1 6.2 aminomethyltransferase family protein compare
CCNA_02000 +4.1 9.8 SSU ribosomal protein S2P compare
CCNA_03824 +4.1 25.4 2-polyprenylphenol 6-hydroxylase accessory protein UbiB compare
CCNA_01964 +4.0 9.2 NADH dehydrogenase compare
CCNA_01058 +3.9 17.6 helix-turn-helix transcriptional regulator compare
CCNA_03805 +3.9 16.9 PadR-family transcriptional regulator compare
CCNA_00962 +3.7 14.4 MarR-family transcriptional regulator compare
CCNA_01851 +3.7 25.8 quinol cytochrome oxidase polypeptide II compare
CCNA_00296 +3.6 23.4 phosphate regulon response regulator PhoB compare
CCNA_03064 +3.6 21.8 PadR-family transcriptional regulator compare
CCNA_02957 +3.5 13.7 ArsR-family transcriptional regulator compare
CCNA_02387 +3.5 24.8 glutathione reductase compare
CCNA_01525 +3.5 18.2 flagellar biosynthesis repressor flbT compare
CCNA_03252 +3.5 20.1 CopY/TcrY-family transcriptional regulator compare
CCNA_03030 +3.5 14.2 cytochrome c2 compare
CCNA_00161 +3.4 25.7 hypothetical protein compare
CCNA_00924 +3.4 21.5 MarR/EmrR family transcriptional regulator compare
CCNA_02103 +3.4 22.9 hypothetical protein compare
CCNA_02021 +3.4 8.6 hypothetical protein compare
CCNA_01815 +3.3 23.3 nitrogen assimilation regulatory protein NtrC compare
CCNA_02025 +3.3 14.2 hypothetical protein compare
CCNA_03858 +3.2 18.6 protein translocase subunit secB compare
CCNA_02066 +3.2 18.1 phytoene/squalene synthase family protein compare
CCNA_03961 +3.1 14.3 hypothetical protein compare
CCNA_01242 +3.1 18.7 amino acid permease compare
CCNA_01979 +3.0 11.3 LexA repressor compare
CCNA_00756 +3.0 4.9 hypothetical protein compare
CCNA_03287 +3.0 21.1 PadR-family transcriptional regulator compare
CCNA_02328 +3.0 2.4 cell cycle regulatory protein GcrA compare
CCNA_02316 +3.0 10.6 hypothetical protein compare
CCNA_01361 +3.0 7.2 PepSY superfamily protein compare
CCNA_00846 +2.9 24.1 proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase compare
CCNA_01061 +2.9 10.3 type I secretion adaptor protein RsaE compare
CCNA_00518 +2.9 18.5 LSU ribosomal protein L25P compare
CCNA_01060 +2.9 11.6 type I protein secretion ATP-binding protein RsaD compare
CCNA_02037 +2.9 18.3 ATP-dependent endopeptidase Lon compare
CCNA_03612 +2.9 18.2 HTH XRE-family transcriptional regulator compare
CCNA_03420 +2.9 11.0 hypothetical protein compare
CCNA_03519 +2.9 8.8 PadR-family transcriptional regulator compare
CCNA_02075 +2.8 5.3 peptidoglycan binding endopeptidase DipM compare
CCNA_R0037 +2.8 13.8 tRNA-Glu compare
CCNA_01526 +2.8 11.9 flagellar biosynthesis regulatory protein flaF compare
CCNA_03289 +2.8 19.8 HicB-family RNA-binding protein compare
CCNA_00264 +2.8 15.1 C4-dicarboxylate transport protein compare
CCNA_03012 +2.8 13.2 peroxiredoxin compare
CCNA_00505 +2.8 13.8 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CCNA_02315 +2.7 14.5 Cro/CI-family transcriptional regulator compare
CCNA_02419 +2.7 8.7 TonB1 protein compare
CCNA_00930 +2.7 19.7 riboflavin synthase alpha chain compare
CCNA_03072 +2.7 11.9 TetR-family transcriptional regulator compare
CCNA_01181 +2.7 14.5 hypothetical protein compare
CCNA_00684 +2.6 19.9 anti-sigma factor, ChrR-family compare
CCNA_01063 +2.6 11.5 UDP-perosamine 4-acetyl transferase compare
CCNA_02575 +2.6 6.2 hypothetical protein compare
CCNA_R0048 +2.6 3.9 tRNA-Leu compare
CCNA_03479 +2.6 15.4 MarR-family transcriptional regulator compare
CCNA_02591 +2.6 16.4 glutaredoxin compare
CCNA_00162 +2.5 10.9 hypothetical protein compare
CCNA_01814 +2.5 17.4 nitrogen regulation protein ntrB compare
CCNA_03689 +2.5 17.8 alanine dehydrogenase compare
CCNA_00459 +2.5 13.1 Na+/H+ antiporter nhaA compare
CCNA_02242 +2.5 17.0 PHB granule-associated protein, phasin2 compare
CCNA_02416 +2.5 13.7 DNA-binding protein HU compare
CCNA_01094 +2.5 6.6 hypothetical protein compare
CCNA_02980 +2.4 16.9 tryptophan 2,3-dioxygenase compare
CCNA_02910 +2.4 20.2 TonB-dependent receptor compare
CCNA_02225 +2.4 14.2 ArsR family/SAM-dependent transcriptional regulator compare
CCNA_01573 +2.4 12.3 ArsR-family transcriptional regulator compare
CCNA_02151 +2.4 6.9 exodeoxyribonuclease VII small subunit compare
CCNA_01780 +2.4 15.4 exopolyphosphatase compare
CCNA_01942 +2.4 11.9 Rrf2 family protein compare
CCNA_00354 +2.4 13.9 NlpC/P60 CHAP domain amidase protein compare
CCNA_01840 +2.4 19.9 MerR-family transcriptional regulator compare
CCNA_00939 +2.4 10.1 MarR-family transcriptional regulator compare
CCNA_01453 +2.4 8.1 electron transport complex I subunit, NADH-ubiquinone oxidoreductase compare
CCNA_02576 +2.4 16.2 phosphoribosylamidoimidazole-succinocarboxamide synthase compare
CCNA_03325 +2.3 10.2 hypothetical protein compare
CCNA_01730 +2.3 12.7 amidophosphoribosyltransferase compare
CCNA_01684 +2.3 14.1 phenylalanine-4-hydroxylase compare
CCNA_03989 +2.3 17.4 MarR-family HTH transcriptional regulator / N-acyltransferase compare
CCNA_02732 +2.3 4.0 hypothetical protein compare
CCNA_01186 +2.3 10.6 hypothetical protein compare
CCNA_01751 +2.3 8.8 aminodeoxychorismate lyase compare
CCNA_03280 +2.3 20.0 pyruvate ferredoxin/flavodoxin oxidoreductase family protein compare
CCNA_02619 +2.2 15.0 stomatin/prohibitin-related protein compare
CCNA_02324 +2.2 13.6 heat shock protein 33 hsp33 compare
CCNA_03498 +2.2 12.5 MarR-family transcriptional regulator compare
CCNA_02339 +2.2 13.3 methyltransferase compare
CCNA_02836 +2.2 15.4 hypothetical protein compare
CCNA_01739 +2.2 9.6 LSU ribosomal protein L9P compare
CCNA_01968 +2.2 7.7 pentapeptide repeats containing protein compare
CCNA_03464 +2.2 9.7 glycine cleavage system H protein compare
CCNA_03271 +2.2 16.3 methionine gamma-lyase compare
CCNA_03129 +2.2 13.7 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_01931 +2.2 14.6 TetR-family transcriptional regulator compare
CCNA_01624 +2.2 6.1 orotate phosphoribosyltransferase compare
CCNA_03863 +2.1 6.4 hypothetical protein compare
CCNA_02081 +2.1 8.1 Sec-independent protein translocase protein tatB compare
CCNA_01913 +2.1 14.0 MarR-family transcriptional regulator compare
CCNA_03062 +2.1 13.8 cell wall hydrolase family protein compare
CCNA_03401 +2.1 8.7 conserved hypothetical cytosolic protein compare
CCNA_02133 +2.1 10.5 glucokinase compare
CCNA_00521 +2.1 5.3 antitoxin protein compare
CCNA_02663 +2.1 4.9 DnaK suppressor protein DksA compare
CCNA_00028 +2.1 7.6 TonB-dependent receptor compare
CCNA_01722 +2.1 5.7 hypothetical protein compare
CCNA_01237 +2.1 2.3 hypothetical protein compare
CCNA_02617 +2.1 16.9 histidinol-phosphate aminotransferase compare
CCNA_01553 +2.1 7.5 undecaprenyl-phosphate beta-N-acetyl-D-fucosaminephosphotransferase compare
CCNA_02646 +2.0 5.0 cell division protein MraZ compare
CCNA_02616 +2.0 14.6 4-hydroxyphenylpyruvate dioxygenase compare
CCNA_01954 +2.0 4.3 ribonuclease E compare
CCNA_01324 +2.0 9.1 LSU ribosomal protein L30P compare
CCNA_00447 +2.0 12.5 chemotaxis protein cheD compare
CCNA_01801 +2.0 10.5 hypothetical protein compare
CCNA_01850 +2.0 12.1 quinol cytochrome oxidase polypeptide I compare
CCNA_00497 +2.0 13.0 putative rhamnosyl transferase compare
CCNA_01393 +2.0 13.8 soluble lytic murein transglycosylase compare
CCNA_03808 +2.0 13.3 organic solvent resistance transport system Ttg2C protein compare
CCNA_01959 +2.0 4.8 3-dehydroquinate dehydratase compare
CCNA_03123 +2.0 10.8 ArsR-family transcriptional regulator compare
CCNA_00944 +2.0 11.4 flagellar hook length determination protein compare
CCNA_02546 +2.0 14.2 GGDEF/response regulator protein PleD compare
CCNA_02180 +2.0 4.4 iron-sulfur cluster assembly/repair protein ApbC compare
CCNA_01622 +2.0 5.7 Rsh ppGpp hydrolase-synthetase compare
CCNA_01008 +2.0 15.4 urocanate hydratase compare
CCNA_01593 +2.0 12.4 Xaa-pro aminopeptidase compare
CCNA_00834 +2.0 9.1 flagellin FljM compare
CCNA_01528 +2.0 12.2 flagellin fljK compare
CCNA_00945 +2.0 12.1 chemotaxis protein MotD compare
CCNA_00781 +1.9 14.0 two-component receiver protein CpdR compare
CCNA_00527 +1.9 12.1 hypothetical protein compare
CCNA_00350 +1.9 2.6 hypothetical protein compare
CCNA_02553 +1.9 13.8 ATP-dependent clp protease ATP-binding subunit ClpA compare
CCNA_01802 +1.9 5.3 hypothetical protein compare
CCNA_03379 +1.9 4.5 Cro/CI family transcriptional regulator compare
CCNA_03089 +1.9 11.3 hypothetical protein compare
CCNA_00998 +1.9 9.1 ROS/MUCR transcriptional regulator compare
CCNA_03108 +1.9 15.3 TonB-dependent outer membrane receptor compare
CCNA_00947 +1.9 14.5 flagellar hook protein FlgE compare
CCNA_01848 +1.9 10.5 quinol cytochrome oxidase polypeptide IV compare
CCNA_03375 +1.9 6.3 RNA polymerase sigma-J factor compare
CCNA_02526 +1.9 12.5 dihydroorotase compare
CCNA_02243 +1.8 12.5 D-alanyl-D-alanine serine-type carboxypeptidase compare
CCNA_02073 +1.8 7.3 cupin domain transcriptional regulator compare
CCNA_00769 +1.8 9.5 TetR family transcriptional regulator compare
CCNA_00735 +1.8 3.6 beta-barrel assembly machine (BAM) protein BamF compare
CCNA_01849 +1.8 10.9 quinol cytochrome oxidase polypeptide III compare
CCNA_00895 +1.8 10.2 hypothetical protein compare
CCNA_03938 +1.8 5.5 hypothetical protein compare
CCNA_02341 +1.8 8.1 small heat shock protein compare
CCNA_00080 +1.8 2.5 LexA-related transcriptional repressor compare
CCNA_02942 +1.8 8.2 nucleoside-diphosphate-sugar epimerase compare
CCNA_00932 +1.8 8.5 6,7-dimethyl-8-ribityllumazine synthase compare
CCNA_03951 +1.8 8.3 hypothetical protein compare
CCNA_01763 +1.8 10.4 multifunctional aminopeptidase compare
CCNA_02125 +1.8 13.9 polar development protein podJ compare
CCNA_00803 +1.8 8.2 chemotaxis protein cheW compare
CCNA_03936 +1.8 10.2 hypothetical protein compare
CCNA_03807 +1.8 9.9 organic solvent resistance transport system Ttg2D protein compare
CCNA_03643 +1.8 2.7 succinate dehydrogenase membrane anchor subunit compare
CCNA_02467 +1.8 11.1 polyisoprenylphosphate hexose-1-phosphotransferase pssZ compare
CCNA_03524 +1.8 9.5 di-/tripeptide transporter compare
CCNA_01775 +1.8 7.0 phosphoribosylformylglycinamidine cyclo-ligase compare
CCNA_00400 +1.8 10.1 MarR/EmrR-family transcriptional regulator compare
CCNA_01541 +1.8 12.1 LysR-family transcriptional regulator compare
CCNA_01655 +1.8 9.0 cyclophilin-type peptidylprolyl cis-trans isomerase compare
CCNA_03959 +1.8 2.3 hypothetical protein compare
CCNA_03557 +1.8 7.8 hypothetical protein compare
CCNA_01923 +1.8 10.0 ATP-dependent RNA helicase compare
CCNA_00954 +1.7 12.9 AAA-family response regulator flbD compare
CCNA_01742 +1.7 8.5 hypothetical protein compare
CCNA_01420 +1.7 6.1 NrdR family transcriptional regulator compare
CCNA_00147 +1.7 2.0 hypothetical protein compare
CCNA_00726 +1.7 12.8 acyl-CoA dehydrogenase compare
CCNA_00920 +1.7 4.7 hypothetical protein compare
CCNA_01804 +1.7 11.1 glutathione peroxidase compare
CCNA_03688 +1.7 9.8 AsnC-family transcriptional regulator compare
CCNA_00931 +1.7 10.7 GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4-phosphate synthase compare
CCNA_03215 +1.7 12.2 ARO8 family aminotransferase/HTH DNA-binding protein compare
CCNA_00562 +1.7 11.0 dihydroorotate dehydrogenase compare
CCNA_03806 +1.7 11.2 outer membrane lipoprotein compare
CCNA_00013 +1.7 14.4 protein-PII uridylyltransferase compare
CCNA_00441 +1.7 9.6 chemotaxis receiver domain protein cheYI compare
CCNA_03391 +1.7 10.8 Cro/CI family transcriptional regulator compare
CCNA_02567 +1.7 11.1 sensory transduction histidine kinase pleC compare
CCNA_00392 +1.7 11.8 dihydroorotase compare
CCNA_00032 +1.7 5.7 antitoxin protein VapB compare


Specific Phenotypes

None in this experiment

For Caulobacter crescentus NA1000 in stress experiments

For stress Gentamicin sulfate salt across organisms