Experiment set3IT077 for Burkholderia phytofirmans PsJN

Compare to:

Uridine nitrogen source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS33915 -7.4 -5.1 isopropylmalate isomerase compare
BPHYT_RS13705 -7.3 -5.0 chorismate synthase compare
BPHYT_RS17680 -7.1 -4.6 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS12935 -7.0 -8.1 chemotaxis protein CheY compare
BPHYT_RS06555 -6.7 -7.9 ketol-acid reductoisomerase compare
BPHYT_RS33835 -6.6 -7.9 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS17670 -6.6 -4.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS17400 -6.6 -6.4 anthranilate phosphoribosyltransferase compare
BPHYT_RS17690 -6.6 -11.0 imidazole glycerol phosphate synthase compare
BPHYT_RS02905 -6.5 -22.3 RNA polymerase subunit sigma-54 compare
BPHYT_RS06545 -6.4 -7.6 acetolactate synthase compare
BPHYT_RS33880 -6.3 -7.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS17855 -6.2 -11.9 glutamate synthase compare
BPHYT_RS17685 -6.2 -7.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS03150 -6.1 -13.7 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS04725 -6.0 -8.2 sulfite reductase compare
BPHYT_RS04740 -6.0 -5.8 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS12150 -5.9 -17.9 PII uridylyl-transferase compare
BPHYT_RS17890 -5.9 -3.4 shikimate kinase compare
BPHYT_RS17390 -5.8 -16.6 anthranilate synthase subunit I compare
BPHYT_RS15920 -5.6 -11.5 argininosuccinate synthase compare
BPHYT_RS04955 -5.6 -1.8 methionyl-tRNA synthetase compare
BPHYT_RS15915 -5.6 -8.5 ornithine carbamoyltransferase compare
BPHYT_RS09515 -5.6 -3.8 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS02610 -5.6 -5.3 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS09500 -5.6 -6.6 glucose-6-phosphate isomerase compare
BPHYT_RS33875 -5.5 -8.3 tryptophan synthase subunit alpha compare
BPHYT_RS08960 -5.4 -3.0 threonine synthase compare
BPHYT_RS01595 -5.4 -11.3 homoserine O-acetyltransferase compare
BPHYT_RS13300 -5.4 -6.2 Dihydropyrimidinase (EC 3.5.2.2) (from data) conserved
BPHYT_RS12940 -5.4 -5.7 signal transduction histidine kinase compare
BPHYT_RS33900 -5.3 -8.0 3-isopropylmalate dehydrogenase compare
BPHYT_RS14915 -5.2 -6.7 phosphoserine aminotransferase compare
BPHYT_RS04965 -5.2 -9.2 ATP-binding protein compare
BPHYT_RS05225 -5.2 -9.4 phosphoenolpyruvate carboxylase compare
BPHYT_RS06900 -5.2 -5.1 aspartate aminotransferase compare
BPHYT_RS03640 -5.1 -3.5 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS13320 -5.1 -1.7 allantoate amidohydrolase compare
BPHYT_RS16245 -5.1 -7.3 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS17405 -5.0 -1.6 indole-3-glycerol phosphate synthase compare
BPHYT_RS08850 -5.0 -3.2 transcriptional regulator compare
BPHYT_RS02590 -4.9 -9.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS17700 -4.9 -3.4 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS08955 -4.8 -4.7 homoserine dehydrogenase compare
BPHYT_RS06045 -4.8 -9.7 transaldolase compare
BPHYT_RS17675 -4.7 -2.7 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS14190 -4.7 -10.1 carbamoyl phosphate synthase large subunit compare
BPHYT_RS14910 -4.7 -8.9 chorismate mutase compare
BPHYT_RS16270 -4.6 -4.7 phosphoglycerate kinase compare
BPHYT_RS33840 -4.4 -8.1 amidophosphoribosyltransferase compare
BPHYT_RS16255 -4.3 -3.0 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS16835 -4.3 -6.2 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS04720 -4.3 -6.7 transcriptional regulator compare
BPHYT_RS06405 -4.3 -6.5 phosphoribosylamine--glycine ligase compare
BPHYT_RS17885 -4.1 -4.7 3-dehydroquinate synthase compare
BPHYT_RS33865 -4.1 -8.7 tryptophan synthase alpha chain compare
BPHYT_RS16735 -4.1 -6.6 phosphogluconate dehydratase compare
BPHYT_RS17380 -4.1 -8.7 ribulose-phosphate 3-epimerase compare
BPHYT_RS09315 -4.1 -1.3 chemotaxis protein CheY compare
BPHYT_RS17395 -4.0 -2.3 anthranilate synthase subunit II compare
BPHYT_RS03725 -4.0 -2.2 serine hydroxymethyltransferase compare
BPHYT_RS17715 -4.0 -5.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS14895 -4.0 -5.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS14845 -3.9 -2.4 cysteine synthase compare
BPHYT_RS33645 -3.8 -4.3 homoserine kinase compare
BPHYT_RS13310 -3.7 -4.4 dihydropyrimidine dehydrogenase subunit B compare
BPHYT_RS16840 -3.7 -4.3 transketolase compare
BPHYT_RS14195 -3.7 -4.3 carbamoyl phosphate synthase small subunit compare
BPHYT_RS12530 -3.7 -3.0 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS01590 -3.6 -5.8 methionine biosynthesis protein MetW compare
BPHYT_RS15710 -3.6 -3.0 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS13315 -3.5 -3.6 dihydropyrimidine dehydrogenase subunit A compare
BPHYT_RS14400 -3.5 -4.9 anti-sigma factor compare
BPHYT_RS18340 -3.4 -2.5 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS12985 -3.4 -2.6 amino acid acetyltransferase compare
BPHYT_RS06610 -3.3 -2.0 triosephosphate isomerase compare
BPHYT_RS12280 -3.0 -1.9 RNA helicase compare
BPHYT_RS04745 -3.0 -4.0 sulfate adenylyltransferase compare
BPHYT_RS04730 -2.9 -4.3 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS33920 -2.8 -7.6 type II citrate synthase compare
BPHYT_RS12845 -2.8 -12.5 ATPase compare
BPHYT_RS02570 -2.7 -4.3 phosphocarrier protein HPr compare
BPHYT_RS21555 -2.7 -6.5 beta alanine--pyruvate aminotransferase conserved
BPHYT_RS07325 -2.6 -1.5 GntR family transcriptional regulator compare
BPHYT_RS33905 -2.6 -1.4 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS05010 -2.6 -4.7 RpiR family transcriptional regulator compare
BPHYT_RS12840 -2.5 -4.3 pyruvate dehydrogenase compare
BPHYT_RS09650 -2.5 -3.1 hypothetical protein compare
BPHYT_RS19785 -2.4 -2.2 chemotaxis protein CheY compare
BPHYT_RS03645 -2.3 -2.1 tRNA dimethylallyltransferase compare
BPHYT_RS10100 -2.3 -5.2 dihydroxy-acid dehydratase compare
BPHYT_RS14790 -2.3 -4.3 D-amino acid dehydrogenase compare
BPHYT_RS09160 -2.3 -6.3 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS12465 -2.2 -4.0 inositol monophosphatase compare
BPHYT_RS18705 -2.1 -1.6 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS15620 -2.0 -3.7 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS13305 -1.9 -2.6 nitrate reductase compare
BPHYT_RS13220 -1.9 -4.8 phosphomethylpyrimidine synthase compare
BPHYT_RS16290 -1.8 -1.3 hypothetical protein compare
BPHYT_RS11745 -1.8 -1.6 (2Fe-2S)-binding protein compare
BPHYT_RS26955 -1.8 -1.2 succinylglutamate desuccinylase compare
BPHYT_RS35750 -1.7 -1.3 hypothetical protein compare
BPHYT_RS32730 -1.7 -2.6 histidine phosphatase compare
BPHYT_RS02650 -1.7 -1.5 membrane protein compare
BPHYT_RS03535 -1.7 -2.9 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS08340 -1.7 -0.5 chemotaxis protein CheY compare
BPHYT_RS04285 -1.6 -1.9 rhamnosyltransferase compare
BPHYT_RS28930 -1.6 -1.1 chromosome partitioning protein ParA compare
BPHYT_RS06685 -1.6 -2.4 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS10740 -1.6 -1.2 LuxR family transcriptional regulator compare
BPHYT_RS17525 -1.6 -2.0 glutaredoxin compare
BPHYT_RS09480 -1.5 -1.4 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS02865 -1.5 -3.2 hypothetical protein compare
BPHYT_RS32880 -1.5 -1.1 alanine acetyltransferase compare
BPHYT_RS14185 -1.5 -2.0 transcription elongation factor GreA compare
BPHYT_RS35675 -1.5 -2.4 short-chain dehydrogenase compare
BPHYT_RS15615 -1.5 -1.7 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS21560 -1.5 -3.2 GntR family transcriptional regulator compare
BPHYT_RS18710 -1.5 -1.7 membrane protein compare
BPHYT_RS21970 -1.5 -2.8 nucleoside hydrolase compare
BPHYT_RS16345 -1.4 -2.7 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS36385 -1.4 -1.1 TetR family transcriptional regulator compare
BPHYT_RS23940 -1.4 -1.3 GntR family transcriptional regulator compare
BPHYT_RS08130 -1.4 -1.6 transposase compare
BPHYT_RS36275 -1.4 -2.3 hypothetical protein compare
BPHYT_RS12990 -1.4 -1.5 iron transporter compare
BPHYT_RS03570 -1.4 -4.7 heat-inducible transcription repressor HrcA compare
BPHYT_RS04335 -1.4 -2.1 membrane protein compare
BPHYT_RS13160 -1.4 -1.4 membrane protein compare
BPHYT_RS09145 -1.4 -5.7 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS26820 -1.4 -1.5 LysR family transcriptional regulator compare
BPHYT_RS04385 -1.4 -3.0 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS34815 -1.4 -2.0 ABC transporter compare
BPHYT_RS20070 -1.3 -2.4 hypothetical protein compare
BPHYT_RS23350 -1.3 -1.9 NAD-dependent epimerase/dehydratase compare
BPHYT_RS20505 -1.3 -1.2 carboxymethylenebutenolidase compare
BPHYT_RS07515 -1.3 -2.3 photosystem reaction center subunit H compare
BPHYT_RS16135 -1.3 -4.2 ABC transporter ATP-binding protein compare
BPHYT_RS32150 -1.3 -1.4 hypothetical protein compare
BPHYT_RS19905 -1.3 -1.9 membrane protein compare
BPHYT_RS08245 -1.3 -4.6 anti-sigma factor compare
BPHYT_RS28000 -1.2 -1.6 permease compare
BPHYT_RS15010 -1.2 -2.7 cation transporter compare
BPHYT_RS03410 -1.2 -1.5 queuine tRNA-ribosyltransferase compare
BPHYT_RS05960 -1.2 -4.8 endoribonuclease L-PSP compare
BPHYT_RS03520 -1.2 -1.9 ATP--cobalamin adenosyltransferase compare
BPHYT_RS17920 -1.2 -1.2 protein CyaY compare
BPHYT_RS17100 -1.2 -5.0 RNA pyrophosphohydrolase compare
BPHYT_RS35770 -1.2 -1.1 glyoxalase compare
BPHYT_RS13470 -1.2 -0.8 arylsulfate sulfotransferase compare
BPHYT_RS30085 -1.2 -1.3 hypothetical protein compare
BPHYT_RS21765 -1.2 -1.6 IclR family transcriptional regulator compare
BPHYT_RS29865 -1.2 -1.5 sugar transferase compare
BPHYT_RS21495 -1.2 -0.9 ABC transporter compare
BPHYT_RS14395 -1.2 -3.3 sugar dehydratase compare
BPHYT_RS22855 -1.2 -2.7 aldehyde-activating protein compare
BPHYT_RS26685 -1.2 -1.5 precorrin-8X methylmutase compare
BPHYT_RS26975 -1.2 -0.8 L-lactate dehydrogenase, LldE subunit (from data) compare
BPHYT_RS26185 -1.2 -1.1 thioesterase compare
BPHYT_RS16130 -1.1 -5.0 cation ABC transporter substrate-binding protein compare
BPHYT_RS05285 -1.1 -1.1 hypothetical protein compare
BPHYT_RS16340 -1.1 -3.5 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS11765 -1.1 -0.8 polyamine ABC transporter permease compare
BPHYT_RS22835 -1.1 -0.9 flagellar motor protein MotA compare
BPHYT_RS02285 -1.1 -3.5 cell division protein compare
BPHYT_RS02965 -1.1 -2.2 membrane protein compare
BPHYT_RS05705 -1.1 -0.9 hypothetical protein compare
BPHYT_RS35945 -1.1 -1.9 response regulator receiver compare
BPHYT_RS27060 -1.1 -1.8 photosystem reaction center subunit H compare
BPHYT_RS27065 -1.1 -1.0 hypothetical protein compare
BPHYT_RS06345 -1.1 -4.2 sensor histidine kinase compare
BPHYT_RS30350 -1.1 -2.0 LysR family transcriptional regulator compare
BPHYT_RS16675 -1.1 -1.8 dihydroorotase compare
BPHYT_RS19680 -1.1 -6.6 glutamate--cysteine ligase compare
BPHYT_RS33110 -1.1 -2.1 chloroperoxidase compare
BPHYT_RS28830 -1.1 -1.0 LysR family transcriptional regulator compare
BPHYT_RS34665 -1.1 -1.5 hypothetical protein compare
BPHYT_RS06375 -1.1 -2.9 ribonuclease compare
BPHYT_RS03375 -1.1 -1.3 NAD(P) transhydrogenase compare
BPHYT_RS25780 -1.0 -1.0 DeoR faimly transcriptional regulator compare
BPHYT_RS21025 -1.0 -1.1 cation-binding protein compare
BPHYT_RS13605 -1.0 -0.9 tRNA-Pro compare
BPHYT_RS15550 -1.0 -1.5 transcriptional regulator compare
BPHYT_RS04950 -1.0 -5.7 hypothetical protein compare
BPHYT_RS28605 -1.0 -1.5 NADPH-dependent FMN reductase compare
BPHYT_RS02685 -1.0 -5.4 cytochrome C oxidase subunit I compare
BPHYT_RS06075 -1.0 -3.9 hypothetical protein compare
BPHYT_RS03625 -1.0 -5.4 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS23395 -1.0 -1.2 glycosyl transferase compare
BPHYT_RS28260 -1.0 -1.8 oxidoreductase compare
BPHYT_RS15075 -1.0 -1.1 dihydrokaempferol 4-reductase compare
BPHYT_RS17265 -1.0 -1.1 cell division protein compare
BPHYT_RS36585 -1.0 -1.8 hypothetical protein compare
BPHYT_RS30040 -1.0 -1.0 hypothetical protein compare
BPHYT_RS02505 -1.0 -2.6 spermidine/putrescine ABC transporter ATPase compare
BPHYT_RS21460 -1.0 -1.4 UDP-N-acetylglucosamine 2-epimerase compare
BPHYT_RS25585 -1.0 -1.4 membrane protein compare
BPHYT_RS10400 -1.0 -0.9 taurine ABC transporter permease compare
BPHYT_RS23455 -1.0 -0.8 phosphorylase compare
BPHYT_RS10165 -1.0 -1.4 transcriptional regulator compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source Uridine in Burkholderia phytofirmans PsJN

For nitrogen source Uridine across organisms