Experiment set3IT076 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -5.7 -5.7 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_5014 -5.0 -2.3 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4352 -3.1 -3.9 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_4416 -2.9 -3.2 Tyrosine recombinase XerC compare
Pf6N2E2_5536 -2.8 -3.7 Holliday junction DNA helicase RuvA compare
Pf6N2E2_178 -2.3 -2.1 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_4162 -2.2 -4.5 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_2574 -1.9 -3.1 Flagellar synthesis regulator FleN compare
Pf6N2E2_4766 -1.8 -11.4 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf6N2E2_5841 -1.8 -2.0 GlcG protein compare
Pf6N2E2_3351 -1.8 -4.2 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_3460 -1.7 -1.7 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_2753 -1.6 -3.1 HtrA protease/chaperone protein compare
Pf6N2E2_3461 -1.6 -2.3 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_3656 -1.5 -4.9 Probable transcription regulator Mig-14 compare
Pf6N2E2_3908 -1.5 -6.2 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_3611 -1.5 -1.5 HflC protein compare
Pf6N2E2_5527 -1.4 -1.6 Cold shock protein CspC compare
Pf6N2E2_2755 -1.4 -3.1 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_2318 -1.4 -6.8 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_5986 -1.4 -1.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4273 -1.3 -5.8 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_3198 -1.3 -2.4 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_2320 -1.3 -3.8 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2317 -1.3 -5.2 Putative analog of CcoH, COG3198 compare
Pf6N2E2_1056 -1.2 -1.5 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_4601 -1.2 -3.0 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_5156 -1.2 -2.4 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_4187 -1.2 -3.8 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_1424 -1.2 -2.2 transcriptional regulator, TetR family compare
Pf6N2E2_3261 -1.2 -3.2 hypothetical protein compare
Pf6N2E2_2274 -1.2 -4.2 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_4369 -1.1 -2.6 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_5252 -1.1 -1.6 FIG00956396: hypothetical protein compare
Pf6N2E2_2510 -1.1 -3.2 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_3655 -1.1 -7.5 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_4743 -1.0 -1.0 hypothetical protein compare
Pf6N2E2_5338 -1.0 -5.3 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_4153 -1.0 -1.1 Sensory box histidine kinase compare
Pf6N2E2_2397 -1.0 -3.5 Two-component system response regulator QseB compare
Pf6N2E2_4353 -1.0 -3.4 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_5316 -1.0 -1.9 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_4372 -1.0 -3.7 FIG00460773: hypothetical protein compare
Pf6N2E2_2325 -0.9 -4.6 Recombination protein RecR compare
Pf6N2E2_98 -0.9 -1.3 putative transmembrane protein compare
Pf6N2E2_5339 -0.9 -3.3 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_5103 -0.9 -1.3 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_2552 -0.9 -3.5 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_2217 -0.9 -4.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2312 -0.9 -1.0 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_2081 -0.9 -1.6 putative exported protein compare
Pf6N2E2_33 -0.9 -1.4 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_4197 -0.9 -5.6 DNA recombination and repair protein RecF compare
Pf6N2E2_5337 -0.8 -2.7 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_1034 -0.8 -1.3 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_4159 -0.8 -2.8 Cytochrome c4 compare
Pf6N2E2_1315 -0.8 -1.2 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
Pf6N2E2_2503 -0.8 -2.1 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_4459 -0.8 -1.7 Transcriptional regulator, GntR family compare
Pf6N2E2_3516 -0.8 -1.4 Probable transmembrane protein compare
Pf6N2E2_3782 -0.8 -1.8 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3455 -0.8 -2.7 Integral membrane protein YfiB compare
Pf6N2E2_3303 -0.8 -2.3 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_3876 -0.8 -3.1 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_2912 -0.8 -1.6 FIG00954094: hypothetical protein compare
Pf6N2E2_2309 -0.8 -1.8 hypothetical protein compare
Pf6N2E2_70 -0.8 -2.7 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_2128 -0.8 -2.8 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_3667 -0.8 -1.1 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_1534 -0.8 -1.9 Probable transmembrane protein compare
Pf6N2E2_2778 -0.8 -2.0 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare
Pf6N2E2_156 -0.8 -1.6 Carbon storage regulator compare
Pf6N2E2_4205 -0.8 -2.7 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_1699 -0.8 -1.6 FIG00955832: hypothetical protein compare
Pf6N2E2_5505 -0.8 -2.0 hypothetical protein compare
Pf6N2E2_6087 -0.8 -2.3 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_2176 -0.8 -1.4 Amidases related to nicotinamidase compare
Pf6N2E2_43 -0.7 -3.4 Histidine permease YuiF compare
Pf6N2E2_2313 -0.7 -2.1 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_234 -0.7 -2.4 FIG00454312: hypothetical protein compare
Pf6N2E2_2788 -0.7 -1.6 Transcriptional regulator, AsnC family compare
Pf6N2E2_3698 -0.7 -2.9 Nicotinamidase family protein YcaC compare
Pf6N2E2_2527 -0.7 -2.3 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_622 -0.7 -2.4 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_5705 -0.7 -2.0 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_5428 -0.7 -2.9 DNA recombination and repair protein RecO compare
Pf6N2E2_5006 -0.7 -3.8 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4454 -0.7 -3.8 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_652 -0.7 -2.8 General secretion pathway protein E compare
Pf6N2E2_4615 -0.7 -1.6 type IV pili signal transduction protein PilI compare
Pf6N2E2_2992 -0.7 -2.5 Regulatory protein RecX compare
Pf6N2E2_1987 -0.7 -1.1 hypothetical protein compare
Pf6N2E2_1339 -0.7 -1.9 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_4059 -0.7 -0.9 DNA-binding protein HU-alpha compare
Pf6N2E2_2428 -0.7 -2.0 Thiol-disulfide isomerase and thioredoxins compare
Pf6N2E2_2513 -0.7 -2.1 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_2181 -0.6 -1.3 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_127 -0.6 -1.1 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_2189 -0.6 -2.9 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_2310 -0.6 -4.3 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_1136 -0.6 -2.0 Transcriptional regulator, TetR family compare
Pf6N2E2_5843 -0.6 -1.7 hypothetical protein compare
Pf6N2E2_6059 -0.6 -2.1 FIG008443: hypothetical protein compare
Pf6N2E2_1885 -0.6 -1.7 Transcriptional regulator, AraC family compare
Pf6N2E2_4673 -0.6 -2.1 ATP-dependent 23S rRNA helicase DbpA compare
Pf6N2E2_1796 -0.6 -2.6 Glycine cleavage system transcriptional activator GcvA compare
Pf6N2E2_5181 -0.6 -4.4 Paraquat-inducible protein A compare
Pf6N2E2_2314 -0.6 -1.9 VapB protein (antitoxin to VapC) compare
Pf6N2E2_5672 -0.6 -2.9 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78) compare
Pf6N2E2_6038 -0.6 -1.8 hypothetical protein compare
Pf6N2E2_3763 -0.6 -1.0 hypothetical protein compare
Pf6N2E2_1705 -0.6 -1.3 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_288 -0.6 -1.1 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_4659 -0.6 -2.5 Lipoprotein, putative compare
Pf6N2E2_2311 -0.6 -3.5 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_5182 -0.6 -2.8 Paraquat-inducible protein A compare
Pf6N2E2_4987 -0.6 -0.9 MaoC-like domain protein compare
Pf6N2E2_712 -0.6 -2.4 hypothetical protein compare
Pf6N2E2_4658 -0.6 -2.6 FIG00955006: hypothetical protein compare
Pf6N2E2_75 -0.6 -1.5 Colicin V production protein compare
Pf6N2E2_2152 -0.6 -1.6 hypothetical protein compare
Pf6N2E2_1352 -0.6 -1.3 Cation transport ATPase compare
Pf6N2E2_3534 -0.6 -1.7 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_2999 -0.6 -1.4 probable tail fiber assembly protein compare
Pf6N2E2_2068 -0.6 -3.9 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) compare
Pf6N2E2_1288 -0.6 -1.4 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf6N2E2_5183 -0.6 -4.4 Paraquat-inducible protein B compare
Pf6N2E2_4612 -0.6 -2.8 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_5133 -0.6 -1.8 FIG00953980: hypothetical protein compare
Pf6N2E2_2261 -0.6 -3.2 VacJ-like lipoprotein precursor compare
Pf6N2E2_809 -0.6 -1.9 Various polyols ABC transporter, permease component 1 compare
Pf6N2E2_5976 -0.6 -2.5 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
Pf6N2E2_1083 -0.6 -1.8 hypothetical protein compare
Pf6N2E2_64 -0.6 -2.1 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_2218 -0.6 -1.9 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_5520 -0.6 -2.7 Sensory box histidine kinase compare
Pf6N2E2_2459 -0.6 -1.7 Organic hydroperoxide resistance protein compare
Pf6N2E2_1195 -0.6 -1.8 hypothetical protein compare
Pf6N2E2_3157 -0.6 -2.5 tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase compare
Pf6N2E2_2572 -0.6 -1.6 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_4075 -0.6 -2.6 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_3305 -0.6 -2.1 hypothetical protein compare
Pf6N2E2_4417 -0.6 -1.5 Protein of unknown function DUF484 compare
Pf6N2E2_3747 -0.6 -2.4 hypothetical protein compare
Pf6N2E2_3661 -0.5 -2.1 hypothetical protein compare
Pf6N2E2_533 -0.5 -1.5 Na(+) H(+) antiporter subunit G compare
Pf6N2E2_5594 -0.5 -2.7 Endonuclease III (EC 4.2.99.18) compare
Pf6N2E2_5049 -0.5 -0.8 acetyltransferase, GNAT family compare
Pf6N2E2_1825 -0.5 -1.5 FOG: EAL domain protein compare
Pf6N2E2_3072 -0.5 -3.9 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf6N2E2_3125 -0.5 -2.8 Transcriptional regulators, LysR family compare
Pf6N2E2_5579 -0.5 -3.1 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_2534 -0.5 -1.1 Cell division protein BolA compare
Pf6N2E2_4418 -0.5 -0.6 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_81 -0.5 -0.9 hypothetical protein compare
Pf6N2E2_2061 -0.5 -2.4 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
Pf6N2E2_5155 -0.5 -1.3 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_3786 -0.5 -1.4 Twin-arginine translocation protein TatC compare
Pf6N2E2_4165 -0.5 -2.2 Zinc ABC transporter, periplasmic-binding protein ZnuA compare
Pf6N2E2_3098 -0.5 -2.5 Probable carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23) compare
Pf6N2E2_478 -0.5 -2.1 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
Pf6N2E2_1203 -0.5 -1.9 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf6N2E2_3370 -0.5 -3.8 DNA repair protein RecN compare
Pf6N2E2_813 -0.5 -2.2 Response regulator compare
Pf6N2E2_990 -0.5 -2.1 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_1875 -0.5 -1.4 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_3283 -0.5 -2.7 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf6N2E2_3527 -0.5 -2.5 hypothetical protein compare
Pf6N2E2_5430 -0.5 -3.0 Transglycosylase, Slt family compare
Pf6N2E2_4886 -0.5 -3.7 Catalase (EC 1.11.1.6) compare
Pf6N2E2_4206 -0.5 -0.7 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_734 -0.5 -2.2 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_4092 -0.5 -1.3 FIG00954395: hypothetical protein compare
Pf6N2E2_4479 -0.5 -0.9 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_5241 -0.5 -1.6 Aminopeptidase N compare
Pf6N2E2_1443 -0.5 -2.1 putative aldo/keto reductase compare
Pf6N2E2_2682 -0.5 -1.8 Transcriptional regulator, LysR family compare
Pf6N2E2_5768 -0.5 -1.4 DNA recombination-dependent growth factor C compare
Pf6N2E2_2352 -0.5 -2.1 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Pf6N2E2_2707 -0.5 -1.7 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_552 -0.5 -1.5 Uncharacterized protein ImpF compare
Pf6N2E2_3723 -0.5 -1.8 FIG022199: FAD-binding protein compare
Pf6N2E2_736 -0.5 -1.6 hypothetical protein compare
Pf6N2E2_1714 -0.5 -1.6 FIG01218476: hypothetical protein compare
Pf6N2E2_350 -0.5 -0.9 Gfa-like protein compare
Pf6N2E2_672 -0.5 -1.8 ABC-type polar amino acid transport system, ATPase component compare
Pf6N2E2_3958 -0.5 -2.1 Putative stomatin/prohibitin-family membrane protease subunit aq_911 compare
Pf6N2E2_1584 -0.5 -1.3 Transcriptional regulator, MarR family / Acetyltransferase (GNAT) compare
Pf6N2E2_3666 -0.5 -1.5 InaA protein compare
Pf6N2E2_440 -0.5 -1.9 FIG00954920: hypothetical protein compare
Pf6N2E2_1782 -0.5 -1.6 STAS domain protein compare
Pf6N2E2_1815 -0.5 -1.5 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Pf6N2E2_5785 -0.5 -1.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_5917 -0.5 -2.0 Type II/IV secretion system protein TadC, associated with Flp pilus assembly compare
Pf6N2E2_4278 -0.5 -3.1 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_3017 -0.5 -1.3 hypothetical protein compare
Pf6N2E2_625 -0.5 -2.5 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_4025 -0.5 -0.7 hypothetical protein compare
Pf6N2E2_2962 -0.5 -1.6 ABC transporter for L-Lysine, ATPase component (from data) compare
Pf6N2E2_460 -0.5 -1.7 Glycerate kinase (EC 2.7.1.31) compare


Specific Phenotypes

For 1 genes in this experiment