Experiment set3IT075 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Dimethyl Sulfoxide 7.5 vol%

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -8.2 -5.7 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_4803 -3.8 -3.7 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_4369 -3.6 -4.9 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_5520 -3.5 -8.9 Sensory box histidine kinase compare
Pf6N2E2_3461 -2.8 -2.7 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_4352 -2.7 -5.0 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_3908 -2.6 -9.3 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_4153 -2.5 -2.9 Sensory box histidine kinase compare
Pf6N2E2_3460 -2.4 -2.7 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_5014 -2.4 -2.0 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_5242 -2.3 -2.8 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_5527 -2.2 -3.0 Cold shock protein CspC compare
Pf6N2E2_4766 -2.0 -13.8 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf6N2E2_3665 -2.0 -1.7 serine/threonine protein kinase compare
Pf6N2E2_6036 -1.9 -3.0 hypothetical protein compare
Pf6N2E2_5001 -1.9 -2.3 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_1056 -1.8 -1.6 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_4362 -1.8 -2.9 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_5677 -1.7 -2.4 Carbon storage regulator compare
Pf6N2E2_2010 -1.7 -2.2 hypothetical protein compare
Pf6N2E2_4454 -1.6 -5.4 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_5150 -1.5 -5.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_5111 -1.5 -3.2 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_2755 -1.5 -3.1 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_4614 -1.4 -3.3 twitching motility protein PilH compare
Pf6N2E2_2753 -1.4 -3.1 HtrA protease/chaperone protein compare
Pf6N2E2_156 -1.4 -3.3 Carbon storage regulator compare
Pf6N2E2_4059 -1.4 -1.6 DNA-binding protein HU-alpha compare
Pf6N2E2_4611 -1.4 -3.0 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_4162 -1.3 -2.3 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_2044 -1.3 -8.4 Histidine kinase/response regulator hybrid protein compare
Pf6N2E2_3351 -1.2 -3.1 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_2258 -1.2 -8.2 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_3521 -1.2 -6.9 Sensor histidine kinase/response regulator compare
Pf6N2E2_5006 -1.2 -6.0 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4417 -1.1 -2.5 Protein of unknown function DUF484 compare
Pf6N2E2_5508 -1.1 -1.6 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_160 -1.1 -3.1 hypothetical protein compare
Pf6N2E2_4612 -1.1 -4.1 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_1758 -1.1 -1.5 Transcriptional regulator, MarR family compare
Pf6N2E2_3612 -1.1 -1.8 HflK protein compare
Pf6N2E2_2217 -1.0 -4.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_5130 -1.0 -2.9 hypothetical protein compare
Pf6N2E2_6140 -1.0 -1.3 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_2218 -1.0 -3.6 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_5320 -1.0 -5.5 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_3607 -1.0 -5.4 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_2473 -1.0 -1.4 Major outer membrane lipoprotein I compare
Pf6N2E2_5319 -1.0 -5.4 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_43 -1.0 -4.9 Histidine permease YuiF compare
Pf6N2E2_4416 -1.0 -2.4 Tyrosine recombinase XerC compare
Pf6N2E2_3498 -1.0 -3.2 FIG00953349: hypothetical protein compare
Pf6N2E2_3085 -0.9 -2.2 FIG00954614: hypothetical protein compare
Pf6N2E2_5155 -0.9 -2.6 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_2561 -0.9 -2.1 FIG00955434: hypothetical protein compare
Pf6N2E2_288 -0.9 -1.3 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_4759 -0.9 -6.8 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_3406 -0.9 -3.5 putative ABC transporter ATP-binding protein compare
Pf6N2E2_3656 -0.9 -5.0 Probable transcription regulator Mig-14 compare
Pf6N2E2_5316 -0.9 -2.1 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_4353 -0.9 -3.2 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_3786 -0.9 -3.2 Twin-arginine translocation protein TatC compare
Pf6N2E2_3268 -0.8 -5.7 Ribosome hibernation protein YhbH compare
Pf6N2E2_342 -0.8 -1.2 DNA-binding response regulator compare
Pf6N2E2_5133 -0.8 -2.3 FIG00953980: hypothetical protein compare
Pf6N2E2_3533 -0.8 -2.7 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf6N2E2_4372 -0.8 -3.3 FIG00460773: hypothetical protein compare
Pf6N2E2_98 -0.8 -2.0 putative transmembrane protein compare
Pf6N2E2_4764 -0.8 -4.2 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_2185 -0.8 -5.3 carboxyphosphonoenolpyruvate phosphonomutase, putative compare
Pf6N2E2_5178 -0.8 -1.2 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_5531 -0.8 -3.2 hypothetical protein compare
Pf6N2E2_5318 -0.8 -7.1 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf6N2E2_3658 -0.8 -5.0 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_4414 -0.8 -2.5 FIG00953808: hypothetical protein compare
Pf6N2E2_5342 -0.8 -1.9 21 kDa hemolysin precursor compare
Pf6N2E2_3088 -0.8 -1.8 hypothetical protein compare
Pf6N2E2_3258 -0.8 -2.4 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_971 -0.8 -2.2 hypothetical protein compare
Pf6N2E2_4743 -0.7 -0.8 hypothetical protein compare
Pf6N2E2_2012 -0.7 -1.8 hypothetical protein compare
Pf6N2E2_4331 -0.7 -2.4 hypothetical protein compare
Pf6N2E2_1113 -0.7 -1.4 Transcriptional regulator, TetR family compare
Pf6N2E2_2061 -0.7 -2.8 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
Pf6N2E2_4068 -0.7 -5.6 Phosphate regulon metal ion transporter containing CBS domains compare
Pf6N2E2_3569 -0.7 -1.7 hypothetical protein compare
Pf6N2E2_3039 -0.7 -4.4 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_4120 -0.7 -5.4 Trk system potassium uptake protein TrkA compare
Pf6N2E2_4187 -0.7 -3.0 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2835 -0.7 -1.5 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf6N2E2_33 -0.7 -1.8 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_5705 -0.7 -1.4 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_2754 -0.7 -2.4 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf6N2E2_5555 -0.7 -1.2 Cold shock protein CspA compare
Pf6N2E2_5510 -0.7 -1.8 FIG00955324: hypothetical protein compare
Pf6N2E2_2788 -0.7 -0.8 Transcriptional regulator, AsnC family compare
Pf6N2E2_3791 -0.7 -4.7 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_2312 -0.7 -1.8 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_3792 -0.7 -3.3 Glucans biosynthesis protein G precursor compare
Pf6N2E2_2282 -0.7 -1.9 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_3982 -0.7 -2.3 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf6N2E2_1920 -0.7 -2.1 Rubredoxin compare
Pf6N2E2_4145 -0.7 -2.7 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Pf6N2E2_5766 -0.7 -1.1 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_3349 -0.7 -1.4 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_6057 -0.7 -2.2 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_4762 -0.6 -2.3 Biotin synthesis protein BioH compare
Pf6N2E2_5331 -0.6 -2.6 ATPase, AFG1 family compare
Pf6N2E2_2508 -0.6 -2.2 hypothetical protein compare
Pf6N2E2_3611 -0.6 -0.8 HflC protein compare
Pf6N2E2_4617 -0.6 -5.1 Signal transduction histidine kinase CheA (EC 2.7.3.-) compare
Pf6N2E2_1534 -0.6 -0.9 Probable transmembrane protein compare
Pf6N2E2_2791 -0.6 -1.7 FIG00954883: hypothetical protein compare
Pf6N2E2_4889 -0.6 -2.9 Putative transport protein compare
Pf6N2E2_2059 -0.6 -1.7 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf6N2E2_4273 -0.6 -3.4 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_733 -0.6 -1.9 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Pf6N2E2_4272 -0.6 -2.0 putative membrane protein compare
Pf6N2E2_1697 -0.6 -2.5 Alkanesulfonate monooxygenase (EC 1.14.14.5) compare
Pf6N2E2_3941 -0.6 -1.6 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_3782 -0.6 -2.5 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_2825 -0.6 -2.1 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_5156 -0.6 -1.2 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_4599 -0.6 -2.1 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_2488 -0.6 -1.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1391 -0.6 -1.9 DNA-binding response regulator, LuxR family compare
Pf6N2E2_4761 -0.6 -4.4 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_5321 -0.6 -4.0 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_902 -0.6 -1.2 hypothetical protein compare
Pf6N2E2_5679 -0.6 -2.9 hypothetical protein compare
Pf6N2E2_1385 -0.6 -1.8 FIG00956261: hypothetical protein compare
Pf6N2E2_2822 -0.6 -3.8 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_1441 -0.6 -1.7 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) compare
Pf6N2E2_3282 -0.6 -1.7 FIG005080: Possible exported protein compare
Pf6N2E2_724 -0.6 -1.4 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) compare
Pf6N2E2_3040 -0.6 -3.5 5-nucleotidase SurE (EC 3.1.3.5) compare
Pf6N2E2_4638 -0.6 -1.6 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_2440 -0.6 -1.0 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_2318 -0.6 -3.2 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2640 -0.6 -1.3 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_3534 -0.6 -1.3 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_1343 -0.6 -2.2 Transcriptional regulator compare
Pf6N2E2_4072 -0.6 -2.5 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_2397 -0.6 -1.4 Two-component system response regulator QseB compare
Pf6N2E2_3661 -0.6 -2.1 hypothetical protein compare
Pf6N2E2_3663 -0.6 -2.7 Glycosyl transferase compare
Pf6N2E2_5906 -0.5 -1.1 Flp pilus assembly protein, pilin Flp compare
Pf6N2E2_1783 -0.5 -1.7 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_4159 -0.5 -1.8 Cytochrome c4 compare
Pf6N2E2_3027 -0.5 -1.1 Baseplate assembly protein V compare
Pf6N2E2_1009 -0.5 -1.5 Inositol transport system permease protein compare
Pf6N2E2_2310 -0.5 -3.8 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_1806 -0.5 -1.6 hypothetical protein compare
Pf6N2E2_5338 -0.5 -3.5 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_3346 -0.5 -3.0 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_2527 -0.5 -2.4 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_4763 -0.5 -3.8 Biotin synthesis protein BioC compare
Pf6N2E2_5044 -0.5 -1.8 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_2487 -0.5 -0.8 FIG00956090: hypothetical protein compare
Pf6N2E2_2311 -0.5 -3.0 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_1493 -0.5 -2.2 ABC-type polar amino acid transport system, ATPase component compare
Pf6N2E2_3667 -0.5 -0.6 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_2552 -0.5 -2.6 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_5317 -0.5 -3.9 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf6N2E2_3373 -0.5 -2.0 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_1842 -0.5 -2.6 Transcriptional regulator, TetR family compare
Pf6N2E2_3969 -0.5 -1.2 Membrane-fusion protein compare
Pf6N2E2_2320 -0.5 -1.5 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2634 -0.5 -3.3 Potassium uptake protein TrkH compare
Pf6N2E2_5794 -0.5 -1.3 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_625 -0.5 -2.0 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_2277 -0.5 -0.7 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_1173 -0.5 -1.2 hypothetical protein compare
Pf6N2E2_5452 -0.5 -1.7 hypothetical protein compare
Pf6N2E2_1474 -0.5 -3.3 SAM-dependent methyltransferases compare
Pf6N2E2_446 -0.5 -3.2 Glutathione reductase (EC 1.8.1.7) compare
Pf6N2E2_5337 -0.5 -1.9 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_3737 -0.5 -1.4 General secretion pathway protein M compare
Pf6N2E2_3659 -0.5 -2.3 Protein fixF compare
Pf6N2E2_302 -0.5 -2.8 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_5430 -0.5 -3.1 Transglycosylase, Slt family compare
Pf6N2E2_2827 -0.5 -0.7 hypothetical protein compare
Pf6N2E2_445 -0.5 -2.7 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_3666 -0.5 -2.1 InaA protein compare
Pf6N2E2_2313 -0.5 -1.6 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_136 -0.5 -1.6 Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE compare
Pf6N2E2_3664 -0.5 -3.4 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_5723 -0.5 -3.5 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_1670 -0.5 -1.6 conserved membrane protein compare
Pf6N2E2_2912 -0.5 -1.1 FIG00954094: hypothetical protein compare
Pf6N2E2_5830 -0.5 -2.0 FIG00960829: hypothetical protein compare
Pf6N2E2_5534 -0.5 -2.5 FIG000859: hypothetical protein YebC compare
Pf6N2E2_3199 -0.5 -2.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_961 -0.5 -1.7 FIG00954712: hypothetical protein compare
Pf6N2E2_649 -0.5 -0.9 General secretion pathway protein L compare
Pf6N2E2_3835 -0.5 -1.7 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_1602 -0.5 -1.6 hypothetical protein compare
Pf6N2E2_6035 -0.5 -0.8 alpha/beta hydrolase fold compare
Pf6N2E2_4566 -0.5 -2.2 LSU m5C1962 methyltransferase RlmI compare
Pf6N2E2_4073 -0.5 -3.0 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare


Specific Phenotypes

For 2 genes in this experiment

For stress Dimethyl Sulfoxide in Pseudomonas fluorescens FW300-N2E2

For stress Dimethyl Sulfoxide across organisms