Experiment set3IT075 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Clovis xylem sap

200 most important genes:

  gene name fitness t score description  
Xcc-8004.2011.1 -5.1 -3.5 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.3536.1 -4.3 -7.2 FIG01210913: hypothetical protein compare
Xcc-8004.4481.1 -4.1 -9.0 hypothetical protein compare
Xcc-8004.4398.1 -3.9 -6.9 Serine hydroxymethyltransferase (EC 2.1.2.1) compare
Xcc-8004.1676.1 -3.6 -10.5 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
Xcc-8004.2412.1 -3.6 -12.8 Phosphoenolpyruvate synthase (EC 2.7.9.2) compare
Xcc-8004.4026.1 -3.5 -8.6 FIG01209666: hypothetical protein compare
Xcc-8004.4073.1 -3.5 -13.1 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
Xcc-8004.4439.1 -3.5 -13.6 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
Xcc-8004.657.1 -3.3 -7.8 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
Xcc-8004.957.1 -3.3 -7.2 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.2012.1 -3.3 -9.2 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.601.1 -3.2 -8.4 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.4025.1 -3.1 -13.3 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
Xcc-8004.3049.1 -3.0 -11.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.1236.1 -3.0 -8.7 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.659.1 -3.0 -2.9 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.271.1 -3.0 -3.8 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.4620.1 -2.9 -8.3 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.1241.1 -2.9 -7.1 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.4737.1 -2.9 -6.5 Putative glycerophosphate (or ribitol phosphate) transferase relatede to lipopolysaccharide core biosynthesis compare
Xcc-8004.1615.1 -2.8 -2.7 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.1710.1 -2.8 -5.3 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
Xcc-8004.2931.1 -2.7 -6.3 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Xcc-8004.3281.1 -2.6 -8.2 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Xcc-8004.4480.1 -2.4 -10.9 Phosphomannomutase (EC 5.4.2.8) compare
Xcc-8004.127.1 -2.3 -2.6 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.1437.1 -2.3 -6.7 Kup system potassium uptake protein compare
Xcc-8004.1359.1 -2.2 -6.9 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.2387.1 -2.2 -2.6 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Xcc-8004.5203.1 -2.2 -3.5 Twin-arginine translocation protein TatB compare
Xcc-8004.1244.1 -2.2 -9.6 Fructose-bisphosphate aldolase class I (EC 4.1.2.13) compare
Xcc-8004.1489.1 -2.1 -12.7 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I compare
Xcc-8004.3283.1 -2.1 -8.5 Phosphoserine aminotransferase (EC 2.6.1.52) compare
Xcc-8004.1124.1 -2.1 -3.4 RidA/YER057c/UK114 superfamily, group 3 compare
Xcc-8004.4501.1 -2.1 -4.6 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Xcc-8004.703.1 -2.0 -2.5 hypothetical protein compare
Xcc-8004.5363.1 -2.0 -3.9 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Xcc-8004.4738.1 -2.0 -10.1 Lipopolysaccharide core biosynthesis glycosyl transferase compare
Xcc-8004.1763.1 -2.0 -3.8 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.2326.1 -1.9 -4.3 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Xcc-8004.4112.1 -1.8 -3.9 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.3324.1 -1.8 -3.4 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.2327.1 -1.8 -6.5 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Xcc-8004.4824.1 -1.7 -7.6 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.5367.1 -1.6 -5.7 Uncharacterized ABC transporter, auxiliary component YrbC compare
Xcc-8004.3282.1 -1.6 -7.1 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Xcc-8004.713.1 -1.6 -1.7 FIG01210186: hypothetical protein compare
Xcc-8004.3304.1 -1.6 -1.6 FIG01211108: hypothetical protein compare
Xcc-8004.4001.1 -1.6 -3.5 FIG146278: Maf/YceF/YhdE family protein compare
Xcc-8004.1873.1 -1.6 -3.0 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Xcc-8004.130.1 -1.6 -6.2 hypothetical protein compare
Xcc-8004.4204.1 -1.6 -2.8 FIG01210014: hypothetical protein compare
Xcc-8004.4231.1 -1.5 -1.5 two-component system regulatory protein compare
Xcc-8004.385.1 -1.5 -2.9 FIG01212287: hypothetical protein compare
Xcc-8004.2561.1 -1.5 -6.8 FIG01213638: hypothetical protein compare
Xcc-8004.3863.1 -1.5 -4.8 Septum site-determining protein MinD compare
Xcc-8004.4024.1 -1.5 -5.7 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) compare
Xcc-8004.5365.1 -1.5 -6.1 Uncharacterized ABC transporter, permease component YrbE compare
Xcc-8004.2110.1 -1.5 -1.3 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1955.1 -1.5 -4.8 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.3346.1 -1.5 -3.5 hypothetical protein compare
Xcc-8004.5366.1 -1.4 -10.2 Uncharacterized ABC transporter, periplasmic component YrbD compare
Xcc-8004.3976.1 -1.4 -3.1 2-methylaconitate cis-trans isomerase compare
Xcc-8004.2930.1 -1.4 -2.3 hypothetical protein compare
Xcc-8004.3979.1 -1.4 -6.5 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.99.1 -1.4 -2.3 FIG01211055: hypothetical protein compare
Xcc-8004.5369.1 -1.4 -5.6 Lipoprotein compare
Xcc-8004.4890.1 -1.4 -10.8 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Xcc-8004.234.1 -1.3 -7.8 cardiolipin synthase compare
Xcc-8004.1914.1 -1.3 -1.6 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Xcc-8004.2922.1 -1.3 -2.4 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.5168.1 -1.3 -1.2 hypothetical protein compare
Xcc-8004.1205.1 -1.3 -2.2 hypothetical protein compare
Xcc-8004.2879.1 -1.2 -1.4 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.4891.1 -1.2 -6.4 Dolichol-phosphate mannosyltransferase compare
Xcc-8004.4430.1 -1.2 -1.9 General secretion pathway protein G compare
Xcc-8004.94.1 -1.2 -1.8 Transcriptional regulator, LuxR family compare
Xcc-8004.2339.1 -1.2 -1.0 Cytochrome c heme lyase subunit CcmH compare
Xcc-8004.726.1 -1.2 -1.2 Putative preQ0 transporter compare
Xcc-8004.1596.1 -1.2 -4.0 hypothetical protein compare
Xcc-8004.2920.1 -1.2 -5.9 Ferrous iron transport protein B compare
Xcc-8004.2079.1 -1.2 -2.8 Outer membrane protein GumB, involved in the export of xanthan compare
Xcc-8004.2217.1 -1.2 -3.3 FIG01209779: hypothetical protein compare
Xcc-8004.27.1 -1.1 -2.0 hypothetical protein compare
Xcc-8004.402.1 -1.1 -4.4 FIG01209770: hypothetical protein compare
Xcc-8004.3445.1 -1.1 -1.9 hypothetical protein compare
Xcc-8004.505.1 -1.1 -5.4 Biotin synthase (EC 2.8.1.6) compare
Xcc-8004.1361.1 -1.1 -1.2 Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB) compare
Xcc-8004.3395.1 -1.1 -2.2 Transcriptional regulator, GntR family compare
Xcc-8004.3855.1 -1.1 -5.3 FIG01209965: hypothetical protein compare
Xcc-8004.1162.1 -1.1 -2.6 FIG01210644: hypothetical protein compare
Xcc-8004.5326.1 -1.1 -1.3 Mobile element protein compare
Xcc-8004.340.1 -1.1 -2.6 Organic hydroperoxide resistance protein compare
Xcc-8004.4381.1 -1.1 -2.7 Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1) compare
Xcc-8004.4507.1 -1.1 -4.4 Glycosyltransferase compare
Xcc-8004.3663.1 -1.1 -1.8 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Xcc-8004.4844.1 -1.1 -1.2 FIG01210764: hypothetical protein compare
Xcc-8004.403.1 -1.1 -2.5 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) compare
Xcc-8004.1400.1 -1.1 -2.3 Cobalamin synthase (EC 2.7.8.26) compare
Xcc-8004.1594.1 -1.1 -6.2 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.1200.1 -1.1 -1.2 hypothetical protein compare
Xcc-8004.2754.1 -1.1 -6.8 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Xcc-8004.1511.1 -1.0 -2.3 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.4596.1 -1.0 -5.3 hypothetical protein compare
Xcc-8004.1316.1 -1.0 -1.8 hypothetical protein compare
Xcc-8004.4373.1 -1.0 -3.4 LppC putative lipoprotein compare
Xcc-8004.465.1 -1.0 -2.2 Transcriptional regulator PobR, AraC family compare
Xcc-8004.3652.1 -1.0 -2.0 FIG01211136: hypothetical protein compare
Xcc-8004.1562.1 -1.0 -2.6 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Xcc-8004.429.1 -1.0 -1.2 hypothetical protein compare
Xcc-8004.4170.1 -1.0 -1.8 LSU ribosomal protein L25p compare
Xcc-8004.5020.1 -1.0 -3.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Xcc-8004.494.1 -1.0 -3.0 Threonine dehydratase, catabolic (EC 4.3.1.19) compare
Xcc-8004.1871.1 -1.0 -3.0 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.1521.1 -1.0 -2.1 FIG01209895: hypothetical protein compare
Xcc-8004.1133.1 -1.0 -1.3 Rubredoxin compare
Xcc-8004.3862.1 -0.9 -4.0 Septum site-determining protein MinC compare
Xcc-8004.3753.1 -0.9 -3.0 putative secreted protein compare
Xcc-8004.3498.1 -0.9 -0.9 hypothetical protein compare
Xcc-8004.3741.1 -0.9 -3.1 Type III effector HrpW, hairpin with pectate lyase domain compare
Xcc-8004.3320.1 -0.9 -1.3 FIG01209869: hypothetical protein compare
Xcc-8004.4752.1 -0.9 -1.7 DNA topoisomerase I (EC 5.99.1.2) compare
Xcc-8004.4441.1 -0.9 -2.7 Tyrosine recombinase XerD compare
Xcc-8004.968.1 -0.9 -4.9 Periplasmic thiol:disulfide interchange protein DsbA compare
Xcc-8004.395.1 -0.9 -3.2 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Xcc-8004.3394.1 -0.9 -2.1 hypothetical protein compare
Xcc-8004.4675.1 -0.9 -1.5 FIG01211280: hypothetical protein compare
Xcc-8004.3342.1 -0.9 -4.0 Negative regulator of beta-lactamase expression compare
Xcc-8004.4514.1 -0.9 -5.7 Glycosyltransferase compare
Xcc-8004.4466.1 -0.9 -4.6 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Xcc-8004.1249.1 -0.9 -3.6 Transcriptional regulator compare
Xcc-8004.3834.1 -0.9 -3.1 Pathogenicity-related protein compare
Xcc-8004.2921.1 -0.9 -1.7 ferrous iron transport protein compare
Xcc-8004.2343.1 -0.9 -1.9 Cytochrome c-type biogenesis protein CcmE, heme chaperone compare
Xcc-8004.1685.1 -0.8 -1.4 hypothetical protein compare
Xcc-8004.323.1 -0.8 -1.1 FIG01210738: hypothetical protein compare
Xcc-8004.1897.1 -0.8 -2.4 Acyl-CoA thioester hydrolase compare
Xcc-8004.1890.1 -0.8 -3.6 hypothetical protein compare
Xcc-8004.4465.1 -0.8 -3.3 ABC transporter ATP-binding protein USSDB6B compare
Xcc-8004.4477.1 -0.8 -1.4 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Xcc-8004.4275.1 -0.8 -3.1 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Xcc-8004.2182.1 -0.8 -5.6 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Xcc-8004.3978.1 -0.8 -2.0 FIG01211989: hypothetical protein compare
Xcc-8004.5317.1 -0.8 -1.6 FIG01210332: hypothetical protein compare
Xcc-8004.5085.1 -0.8 -4.4 FIG021862: membrane protein, exporter compare
Xcc-8004.3576.1 -0.8 -4.3 Intracellular PHB depolymerase (EC 3.1.1.-) compare
Xcc-8004.3385.1 -0.8 -1.6 Fructokinase in mannoside utilization gene cluster (EC 2.7.1.4) compare
Xcc-8004.2386.1 -0.8 -5.1 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
Xcc-8004.2618.1 -0.8 -2.0 Ferric siderophore transport system, periplasmic binding protein TonB compare
Xcc-8004.1858.1 -0.8 -1.0 FIG01211170: hypothetical protein compare
Xcc-8004.4976.1 -0.8 -4.9 hypothetical protein compare
Xcc-8004.171.1 -0.8 -0.9 hypothetical protein compare
Xcc-8004.5230.1 -0.8 -3.3 Gluconolactonase (EC 3.1.1.17) compare
Xcc-8004.2495.1 -0.8 -1.9 hypothetical protein compare
Xcc-8004.4486.1 -0.8 -5.5 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Xcc-8004.4384.1 -0.8 -1.7 hypothetical protein compare
Xcc-8004.797.1 -0.8 -1.1 Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) compare
Xcc-8004.3700.1 -0.8 -2.3 FIG01211160: hypothetical protein compare
Xcc-8004.5084.1 -0.8 -2.6 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) compare
Xcc-8004.2389.1 -0.8 -1.2 protein of unknown function DUF1244 compare
Xcc-8004.56.1 -0.8 -3.5 hypothetical protein compare
Xcc-8004.5368.1 -0.8 -1.4 FIG01210868: hypothetical protein compare
Xcc-8004.3433.1 -0.7 -3.6 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Xcc-8004.1334.1 -0.7 -1.1 hypothetical protein compare
Xcc-8004.2081.1 -0.7 -2.4 Xanthan biosynthesis chain length determinant protein GumC compare
Xcc-8004.1832.1 -0.7 -1.9 FIG01210449: hypothetical protein compare
Xcc-8004.2660.1 -0.7 -1.9 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.2421.1 -0.7 -5.8 Polyhydroxyalkanoic acid synthase compare
Xcc-8004.5118.1 -0.7 -1.8 4-carboxy-4-hydroxy-2-oxoadipate aldolase (EC 4.1.3.17) compare
Xcc-8004.3156.1 -0.7 -3.4 Magnesium and cobalt efflux protein CorC compare
Xcc-8004.2565.1 -0.7 -2.2 hypothetical protein compare
Xcc-8004.3759.1 -0.7 -1.8 hypothetical protein compare
Xcc-8004.1727.1 -0.7 -1.9 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.4374.1 -0.7 -2.1 Predicted endonuclease distantly related to archaeal Holliday junction resolvase compare
Xcc-8004.5268.1 -0.7 -1.5 Mobile element protein compare
Xcc-8004.4225.1 -0.7 -0.9 Regulator of nucleoside diphosphate kinase compare
Xcc-8004.5280.1 -0.7 -2.2 hypothetical protein compare
Xcc-8004.3313.1 -0.7 -1.6 LSU ribosomal protein L9p compare
Xcc-8004.1900.1 -0.7 -1.9 Acyl-CoA thioester hydrolase compare
Xcc-8004.4092.1 -0.7 -4.3 FIG01209901: hypothetical protein compare
Xcc-8004.118.1 -0.7 -2.1 FIG037995: Hypothetical protein compare
Xcc-8004.2219.1 -0.7 -2.8 Magnesium and cobalt efflux protein CorC compare
Xcc-8004.1696.1 -0.7 -1.3 N-acetylglutamate synthase (EC 2.3.1.1) compare
Xcc-8004.3193.1 -0.7 -1.4 C-type cytochrome biogenesis protein compare
Xcc-8004.2318.1 -0.7 -2.8 Argininosuccinate synthase (EC 6.3.4.5) compare
Xcc-8004.1019.1 -0.7 -2.3 hypothetical protein compare
Xcc-8004.2096.1 -0.7 -2.9 FIG003671: Metal-dependent hydrolase compare
Xcc-8004.2357.1 -0.7 -1.9 Segregation and condensation protein B compare
Xcc-8004.2420.1 -0.7 -3.1 PHA synthase subunit compare
Xcc-8004.1336.1 -0.7 -3.2 two-component system sensor protein compare
Xcc-8004.4185.1 -0.7 -1.5 Acylphosphate phosphohydrolase (EC 3.6.1.7), putative compare
Xcc-8004.4013.1 -0.7 -1.3 FIG000557: hypothetical protein co-occurring with RecR compare
Xcc-8004.4446.1 -0.7 -3.0 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
Xcc-8004.4829.1 -0.7 -2.4 Transamidase GatB domain protein compare
Xcc-8004.776.1 -0.7 -2.6 Fatty acid desaturase compare
Xcc-8004.4768.1 -0.7 -1.6 FIG01210642: hypothetical protein compare
Xcc-8004.409.1 -0.7 -1.7 hypothetical protein compare
Xcc-8004.75.1 -0.7 -1.9 hypothetical protein compare
Xcc-8004.5252.1 -0.7 -3.0 FIG01210658: hypothetical protein compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in clovis xylem sap experiments