Experiment set3IT075 for Methanococcus maripaludis S2

Compare to:

H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS07845 -3.8 -4.9 LL-diaminopimelate aminotransferase compare
MMP_RS05920 -3.7 -1.3 50S ribosomal protein L37e compare
MMP_RS06120 -3.7 -4.3 UPF0147 family protein compare
MMP_RS03475 -3.6 -1.2 hypothetical protein compare
MMP_RS08435 -3.6 -4.0 Era-like GTP-binding protein compare
MMP_RS02195 -3.5 -7.8 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS02010 -3.5 -17.0 PHP domain-containing protein compare
MMP_RS06630 -3.4 -1.8 UPF0058 family protein compare
MMP_RS00895 -3.4 -9.0 hypothetical protein compare
MMP_RS07730 -3.3 -3.9 pyruvate synthase subunit beta compare
MMP_RS08300 -3.3 -2.3 metal-sulfur cluster assembly factor compare
MMP_RS06885 -3.2 -5.4 50S ribosome-binding GTPase compare
MMP_RS01005 -3.2 -3.0 riboflavin synthase compare
MMP_RS03700 -3.2 -11.4 sodium:proton antiporter compare
MMP_RS08635 -3.1 -3.5 UbiA family prenyltransferase compare
MMP_RS08820 -3.1 -9.3 hypothetical protein compare
MMP_RS01020 -3.1 -2.0 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS06730 -3.1 -3.7 phosphopantothenate/pantothenate synthetase compare
MMP_RS02280 -3.1 -1.5 DUF211 domain-containing protein compare
MMP_RS03035 -3.0 -6.7 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS07600 -2.9 -4.4 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS01755 -2.9 -2.7 DUF2097 domain-containing protein compare
MMP_RS06925 -2.8 -4.2 ribonuclease VapC4 compare
MMP_RS06230 -2.8 -3.5 helix-turn-helix domain-containing protein compare
MMP_RS05265 -2.8 -3.7 2-isopropylmalate synthase compare
MMP_RS06400 -2.8 -3.0 4Fe-4S binding protein compare
MMP_RS01725 -2.8 -7.4 class I SAM-dependent methyltransferase family protein compare
MMP_RS00305 -2.7 -3.3 phosphoribosyl-ATP diphosphatase compare
MMP_RS00110 -2.7 -6.4 hypothetical protein compare
MMP_RS07750 -2.7 -7.3 DUF357 domain-containing protein compare
MMP_RS08745 -2.7 -9.4 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS01225 -2.7 -6.7 DUF5379 domain-containing protein compare
MMP_RS01830 -2.7 -3.2 tRNA-Val compare
MMP_RS02240 -2.6 -6.3 methanogenesis marker 7 protein compare
MMP_RS05815 -2.6 -4.1 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS01175 -2.6 -5.0 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS08650 -2.6 -5.5 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS00300 -2.6 -1.5 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS03435 -2.5 -2.5 ketol-acid reductoisomerase compare
MMP_RS05640 -2.5 -7.9 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS08790 -2.5 -4.3 translation initiation factor IF-2 subunit alpha compare
MMP_RS04890 -2.5 -1.4 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS01910 -2.5 -9.9 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS00515 -2.5 -1.8 DUF655 domain-containing protein compare
MMP_RS03315 -2.5 -2.4 ferrous iron transport protein A compare
MMP_RS03400 -2.5 -5.2 archease compare
MMP_RS00520 -2.5 -2.5 RNA polymerase Rpb4 family protein compare
MMP_RS04500 -2.5 -16.6 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS02190 -2.5 -4.4 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS01610 -2.4 -5.8 hypothetical protein compare
MMP_RS01955 -2.4 -3.2 hypothetical protein compare
MMP_RS01925 -2.4 -7.8 DUF1616 domain-containing protein compare
MMP_RS02900 -2.4 -1.1 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS07380 -2.4 -3.2 transcription elongation factor Spt5 compare
MMP_RS08715 -2.4 -3.2 formylmethanofuran dehydrogenase subunit B compare
MMP_RS06340 -2.4 -7.7 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS01795 -2.4 -2.7 methanogenesis marker 6 protein compare
MMP_RS06285 -2.4 -3.4 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS02355 -2.4 -5.2 30S ribosomal protein S27ae compare
MMP_RS01905 -2.4 -13.4 glycosyltransferase compare
MMP_RS06900 -2.3 -3.5 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS07545 -2.3 -1.7 HTH domain-containing protein compare
MMP_RS02135 -2.3 -9.0 DUF5612 domain-containing protein compare
MMP_RS02245 -2.3 -6.0 hypothetical protein compare
MMP_RS00685 -2.3 -7.4 2-phospho-L-lactate guanylyltransferase compare
MMP_RS07005 -2.3 -1.2 4Fe-4S binding protein compare
MMP_RS07390 -2.3 -5.5 cell division protein FtsZ compare
MMP_RS00115 -2.3 -14.9 radical SAM protein compare
MMP_RS08095 -2.3 -10.7 dethiobiotin synthase compare
MMP_RS08100 -2.3 -8.3 8-amino-7-oxononanoate synthase compare
MMP_RS02800 -2.3 -6.7 nucleotidyltransferase domain-containing protein compare
MMP_RS01900 -2.3 -13.3 hypothetical protein compare
MMP_RS08210 -2.3 -3.6 phosphatidylglycerophosphatase A compare
MMP_RS01800 -2.2 -5.7 TIGR00303 family protein compare
MMP_RS01920 -2.2 -10.9 glycosyltransferase family 2 protein compare
MMP_RS03445 -2.2 -1.9 methanogenesis marker 17 protein compare
MMP_RS01220 -2.2 -11.1 hypothetical protein compare
MMP_RS06670 -2.2 -5.8 glucose-6-phosphate isomerase compare
MMP_RS07635 -2.2 -9.3 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS08105 -2.2 -11.9 6-carboxyhexanoate--CoA ligase compare
MMP_RS07630 -2.1 -2.3 ATP-binding cassette domain-containing protein compare
MMP_RS02345 -2.1 -5.6 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS04585 -2.1 -12.9 AIR synthase related protein compare
MMP_RS01385 -2.1 -1.2 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS06270 -2.1 -6.8 TIGR00300 family protein compare
MMP_RS07755 -2.1 -2.5 DUF555 domain-containing protein compare
MMP_RS06475 -2.1 -4.8 FAD-dependent oxidoreductase compare
MMP_RS04720 -2.1 -2.5 DedA family protein compare
MMP_RS06895 -2.1 -2.7 selenocysteine-specific translation elongation factor compare
MMP_RS02145 -2.1 -7.9 winged helix-turn-helix transcriptional regulator compare
MMP_RS03025 -2.1 -8.5 molybdenum cofactor guanylyltransferase compare
MMP_RS01895 -2.1 -11.4 flippase compare
MMP_RS06295 -2.1 -9.6 methanogenesis marker 14 protein compare
MMP_RS01915 -2.1 -10.7 DUF354 domain-containing protein compare
MMP_RS03600 -2.0 -3.4 triose-phosphate isomerase compare
MMP_RS06625 -2.0 -3.9 DNA primase compare
MMP_RS06395 -2.0 -5.0 ThiF family adenylyltransferase compare
MMP_RS08440 -2.0 -4.0 cell division protein SepF compare
MMP_RS05845 -2.0 -2.3 tRNA-intron lyase compare
MMP_RS03640 -2.0 -4.6 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS06350 -2.0 -8.2 HesA/MoeB/ThiF family protein compare
MMP_RS01500 -2.0 -4.0 CBS domain-containing protein compare
MMP_RS07645 -2.0 -7.6 aldehyde dehydrogenase family protein compare
MMP_RS05930 -2.0 -3.2 3-isopropylmalate dehydratase large subunit compare
MMP_RS01365 -2.0 -3.6 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS06980 -2.0 -9.5 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS07735 -2.0 -1.3 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS01960 -1.9 -0.9 hypothetical protein compare
MMP_RS07580 -1.9 -4.4 DUF356 domain-containing protein compare
MMP_RS04685 -1.9 -4.1 DUF126 domain-containing protein compare
MMP_RS01325 -1.9 -3.9 dihydroneopterin aldolase family protein compare
MMP_RS00810 -1.9 -11.2 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS07195 -1.9 -11.0 M20 family metallo-hydrolase compare
MMP_RS05250 -1.9 -2.7 NFYB/HAP3 family transcription factor subunit compare
MMP_RS07200 -1.9 -9.1 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS08720 -1.9 -1.9 4Fe-4S binding protein compare
MMP_RS04780 -1.8 -3.3 ribonuclease P compare
MMP_RS01380 -1.8 -3.1 PHP domain-containing protein compare
MMP_RS06370 -1.8 -5.8 biotin synthase BioB compare
MMP_RS07435 -1.8 -3.4 GMP synthase subunit A compare
MMP_RS07425 -1.8 -8.6 GTP-binding protein compare
MMP_RS04775 -1.8 -4.1 adenosylhomocysteinase compare
MMP_RS00725 -1.8 -8.5 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS05425 -1.8 -5.4 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS07605 -1.8 -5.6 diadenylate cyclase compare
MMP_RS06355 -1.8 -3.4 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS06865 -1.7 -1.7 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS03095 -1.7 -8.9 diphthine synthase compare
MMP_RS01700 -1.7 -1.6 dihydroxy-acid dehydratase compare
MMP_RS01940 -1.7 -6.7 MoxR family ATPase compare
MMP_RS03015 -1.7 -9.7 GTP 3' 8-cyclase MoaA compare
MMP_RS00050 -1.7 -9.2 AarF/UbiB family protein compare
MMP_RS06315 -1.7 -1.6 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS04850 -1.7 -13.7 UPF0254 family protein compare
MMP_RS07695 -1.7 -7.1 DUF3236 domain-containing protein compare
MMP_RS08460 -1.6 -2.5 proteasome-activating nucleotidase compare
MMP_RS06130 -1.6 -6.7 peptidylprolyl isomerase compare
MMP_RS01890 -1.6 -4.6 nucleotide sugar dehydrogenase compare
MMP_RS05345 -1.6 -8.5 hypothetical protein compare
MMP_RS08370 -1.6 -1.0 cation:proton antiporter subunit C compare
MMP_RS05515 -1.6 -4.7 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS07090 -1.5 -9.8 tRNA (adenine-N1)-methyltransferase compare
MMP_RS06940 -1.5 -4.0 polyprenyl diphosphate synthase compare
MMP_RS00735 -1.5 -4.5 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS06215 -1.5 -4.3 30S ribosomal protein S6e compare
MMP_RS06310 -1.5 -2.4 NAD(P)/FAD-dependent oxidoreductase compare
MMP_RS04615 -1.5 -4.1 PDGLE domain-containing protein compare
MMP_RS01950 -1.5 -8.1 hypothetical protein compare
MMP_RS00750 -1.5 -2.9 fumarate hydratase compare
MMP_RS07540 -1.5 -4.2 CBS domain-containing protein compare
MMP_RS01970 -1.5 -6.5 TIGR04279 domain-containing protein compare
MMP_RS01945 -1.4 -6.3 DUF4350 domain-containing protein compare
MMP_RS01265 -1.4 -1.9 hypothetical protein compare
MMP_RS04605 -1.4 -4.7 cobalt ECF transporter T component CbiQ compare
MMP_RS05555 -1.4 -1.8 DUF4040 domain-containing protein compare
MMP_RS01840 -1.4 -6.6 TIGR00289 family protein compare
MMP_RS00695 -1.4 -1.4 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS02875 -1.4 -10.1 chorismate pyruvate-lyase family protein compare
MMP_RS01750 -1.4 -7.2 DUF63 family protein compare
MMP_RS03145 -1.4 -7.9 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS03140 -1.4 -10.0 hypothetical protein compare
MMP_RS00730 -1.4 -6.1 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS00325 -1.4 -2.4 RNA-binding protein compare
MMP_RS09020 -1.4 -2.1 hypothetical protein compare
MMP_RS00060 -1.4 -1.4 3-dehydroquinate synthase II compare
MMP_RS02165 -1.4 -7.1 tRNA-dihydrouridine synthase compare
MMP_RS01930 -1.3 -9.1 hypothetical protein compare
MMP_RS01335 -1.3 -3.4 prefoldin subunit beta compare
MMP_RS06020 -1.3 -4.5 archaeoflavoprotein AfpA compare
MMP_RS08445 -1.3 -3.9 DUF2099 family protein compare
MMP_RS08785 -1.3 -1.7 RNA-protein complex protein Nop10 compare
MMP_RS01935 -1.3 -7.7 DUF58 domain-containing protein compare
MMP_RS05525 -1.3 -7.8 calcium/sodium antiporter compare
MMP_RS00320 -1.3 -2.6 class I SAM-dependent methyltransferase compare
MMP_RS07555 -1.3 -0.9 monovalent cation/H+ antiporter subunit E compare
MMP_RS03110 -1.3 -5.1 glycosyltransferase family 2 protein compare
MMP_RS03155 -1.3 -6.4 precorrin-6A reductase compare
MMP_RS03580 -1.3 -3.2 signal recognition particle-docking protein FtsY compare
MMP_RS01885 -1.3 -5.8 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS05460 -1.3 -8.2 YcaO-related McrA-glycine thioamidation protein compare
MMP_RS07875 -1.2 -5.0 hypothetical protein compare
MMP_RS07700 -1.2 -9.5 DUF1188 domain-containing protein compare
MMP_RS03960 -1.2 -1.3 hypothetical protein compare
MMP_RS06770 -1.2 -6.0 DHH family phosphoesterase compare
MMP_RS01975 -1.2 -8.6 hypothetical protein compare
MMP_RS00315 -1.2 -5.6 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS01880 -1.2 -4.7 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS08330 -1.2 -4.7 NADH-quinone oxidoreductase subunit H compare
MMP_RS01545 -1.2 -1.5 CBS domain-containing protein compare
MMP_RS04710 -1.2 -2.1 hypothetical protein compare
MMP_RS01045 -1.1 -6.5 diphthamide biosynthesis enzyme Dph2 compare
MMP_RS06725 -1.1 -8.0 hypothetical protein compare
MMP_RS07420 -1.1 -4.0 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS06105 -1.1 -6.4 hydrogenase maturation peptidase HycI compare
MMP_RS05925 -1.1 -3.6 small nuclear ribonucleoprotein compare
MMP_RS04955 -1.1 -5.5 DNA topoisomerase I compare
MMP_RS08165 -1.1 -2.3 phosphoglycerate dehydrogenase compare
MMP_RS01875 -1.1 -5.5 N-acetyltransferase compare
MMP_RS04870 -1.0 -4.0 TIGR02253 family HAD-type hydrolase compare
MMP_RS00900 -1.0 -2.6 50S ribosomal protein L39e compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in rich t1 experiments