Experiment set3IT075 for Burkholderia phytofirmans PsJN

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N-Acetyl-D-Glucosamine nitrogen source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS13705 -7.0 -4.8 chorismate synthase compare
BPHYT_RS18320 -6.8 -9.3 orotate phosphoribosyltransferase compare
BPHYT_RS14915 -6.6 -6.4 phosphoserine aminotransferase compare
BPHYT_RS17690 -6.4 -10.8 imidazole glycerol phosphate synthase compare
BPHYT_RS16245 -6.4 -4.4 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS33880 -6.4 -7.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS33865 -6.3 -6.1 tryptophan synthase alpha chain compare
BPHYT_RS17855 -6.1 -11.8 glutamate synthase compare
BPHYT_RS06555 -6.1 -8.4 ketol-acid reductoisomerase compare
BPHYT_RS09500 -6.0 -7.2 glucose-6-phosphate isomerase compare
BPHYT_RS15920 -6.0 -10.0 argininosuccinate synthase compare
BPHYT_RS05225 -5.8 -10.5 phosphoenolpyruvate carboxylase compare
BPHYT_RS17890 -5.8 -3.5 shikimate kinase compare
BPHYT_RS33900 -5.7 -12.2 3-isopropylmalate dehydrogenase compare
BPHYT_RS33835 -5.7 -8.6 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS17680 -5.7 -4.2 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS17885 -5.6 -6.7 3-dehydroquinate synthase compare
BPHYT_RS16905 -5.6 -5.4 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS03150 -5.5 -12.0 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS16835 -5.4 -7.9 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS14845 -5.4 -5.1 cysteine synthase compare
BPHYT_RS12935 -5.3 -8.0 chemotaxis protein CheY compare
BPHYT_RS08955 -5.3 -3.7 homoserine dehydrogenase compare
BPHYT_RS17675 -5.3 -2.6 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS15915 -5.3 -8.8 ornithine carbamoyltransferase compare
BPHYT_RS14190 -5.3 -7.2 carbamoyl phosphate synthase large subunit compare
BPHYT_RS17670 -5.2 -5.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS09515 -5.2 -3.6 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS17685 -5.2 -5.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS04725 -5.1 -9.1 sulfite reductase compare
BPHYT_RS08960 -5.0 -3.0 threonine synthase compare
BPHYT_RS06545 -5.0 -10.8 acetolactate synthase compare
BPHYT_RS03640 -5.0 -3.4 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS03645 -4.9 -4.5 tRNA dimethylallyltransferase compare
BPHYT_RS17405 -4.9 -1.7 indole-3-glycerol phosphate synthase compare
BPHYT_RS02905 -4.9 -20.3 RNA polymerase subunit sigma-54 compare
BPHYT_RS33645 -4.9 -6.7 homoserine kinase compare
BPHYT_RS06610 -4.8 -2.4 triosephosphate isomerase compare
BPHYT_RS01590 -4.8 -5.5 methionine biosynthesis protein MetW compare
BPHYT_RS14910 -4.8 -6.7 chorismate mutase compare
BPHYT_RS12150 -4.7 -17.0 PII uridylyl-transferase compare
BPHYT_RS06405 -4.7 -7.0 phosphoribosylamine--glycine ligase compare
BPHYT_RS08850 -4.7 -3.2 transcriptional regulator compare
BPHYT_RS16675 -4.6 -3.2 dihydroorotase compare
BPHYT_RS16840 -4.6 -3.2 transketolase compare
BPHYT_RS16735 -4.6 -7.7 phosphogluconate dehydratase compare
BPHYT_RS33840 -4.6 -9.8 amidophosphoribosyltransferase compare
BPHYT_RS33875 -4.5 -4.8 tryptophan synthase subunit alpha compare
BPHYT_RS17390 -4.5 -13.7 anthranilate synthase subunit I compare
BPHYT_RS17395 -4.5 -2.2 anthranilate synthase subunit II compare
BPHYT_RS06900 -4.5 -5.3 aspartate aminotransferase compare
BPHYT_RS16270 -4.4 -4.0 phosphoglycerate kinase compare
BPHYT_RS17400 -4.4 -5.6 anthranilate phosphoribosyltransferase compare
BPHYT_RS04740 -4.3 -6.6 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS01595 -4.3 -8.4 homoserine O-acetyltransferase compare
BPHYT_RS33915 -4.3 -6.0 isopropylmalate isomerase compare
BPHYT_RS03535 -4.2 -6.4 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS12940 -4.1 -4.7 signal transduction histidine kinase compare
BPHYT_RS02610 -4.1 -5.2 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS17380 -4.1 -8.8 ribulose-phosphate 3-epimerase compare
BPHYT_RS04965 -4.1 -8.1 ATP-binding protein compare
BPHYT_RS06045 -4.0 -9.4 transaldolase compare
BPHYT_RS23230 -4.0 -2.0 histidine kinase compare
BPHYT_RS16255 -3.9 -4.7 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS14895 -3.9 -5.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS12530 -3.9 -5.6 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS04955 -3.8 -1.9 methionyl-tRNA synthetase compare
BPHYT_RS01455 -3.8 -1.3 peptide deformylase compare
BPHYT_RS09385 -3.8 -1.3 FAD-dependent oxidoreductase compare
BPHYT_RS02735 -3.6 -9.6 Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) (from data) conserved
BPHYT_RS17715 -3.6 -6.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS10100 -3.5 -5.3 dihydroxy-acid dehydratase compare
BPHYT_RS14855 -3.4 -2.5 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS04720 -3.4 -5.7 transcriptional regulator compare
BPHYT_RS06685 -3.3 -3.9 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS18340 -3.3 -2.5 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS12985 -3.3 -2.7 amino acid acetyltransferase compare
BPHYT_RS17700 -3.2 -3.4 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS05960 -3.1 -4.6 endoribonuclease L-PSP compare
BPHYT_RS04730 -3.0 -2.9 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS23875 -3.0 -1.5 sugar ABC transporter ATP-binding protein compare
BPHYT_RS02590 -3.0 -6.4 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS07325 -2.9 -1.4 GntR family transcriptional regulator compare
BPHYT_RS03625 -2.9 -9.9 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS18705 -2.9 -2.2 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS26955 -2.9 -1.4 succinylglutamate desuccinylase compare
BPHYT_RS03725 -2.8 -2.4 serine hydroxymethyltransferase compare
BPHYT_RS29630 -2.8 -2.4 SAM-dependent methyltransferase compare
BPHYT_RS04745 -2.8 -3.3 sulfate adenylyltransferase compare
BPHYT_RS36385 -2.7 -1.3 TetR family transcriptional regulator compare
BPHYT_RS08565 -2.6 -1.1 dihydroorotate dehydrogenase compare
BPHYT_RS02730 -2.5 -10.1 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data) conserved
BPHYT_RS10095 -2.5 -2.3 integrase compare
BPHYT_RS29520 -2.5 -1.2 hypothetical protein compare
BPHYT_RS02745 -2.5 -7.7 N-acetylglucosamine-specific PTS system, IIBC components (nagE) (from data) conserved
BPHYT_RS05020 -2.5 -4.5 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS12055 -2.4 -14.5 phosphoenolpyruvate synthase compare
BPHYT_RS33905 -2.4 -1.3 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS12465 -2.3 -3.2 inositol monophosphatase compare
BPHYT_RS02725 -2.3 -3.3 GntR family transcriptional regulator compare
BPHYT_RS14195 -2.3 -3.4 carbamoyl phosphate synthase small subunit compare
BPHYT_RS25875 -2.1 -1.5 type III secretion protein compare
BPHYT_RS17100 -2.1 -5.8 RNA pyrophosphohydrolase compare
BPHYT_RS18910 -2.1 -1.9 FlgN compare
BPHYT_RS34745 -2.0 -1.4 hypothetical protein compare
BPHYT_RS33920 -2.0 -7.2 type II citrate synthase compare
BPHYT_RS34295 -2.0 -1.2 fimbrial protein compare
BPHYT_RS02570 -2.0 -7.7 phosphocarrier protein HPr compare
BPHYT_RS21025 -2.0 -1.5 cation-binding protein compare
BPHYT_RS06175 -1.9 -4.5 LPS biosynthesis compare
BPHYT_RS03280 -1.9 -2.2 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS02865 -1.9 -4.5 hypothetical protein compare
BPHYT_RS16290 -1.9 -1.3 hypothetical protein compare
BPHYT_RS05420 -1.8 -2.9 glutathione S-transferase compare
BPHYT_RS09155 -1.8 -4.8 3-ketoacyl-ACP reductase compare
BPHYT_RS02740 -1.8 -4.3 N-acetylglucosamine-specific PTS system, I, HPr, and IIA components (nagF) (from data) compare
BPHYT_RS09145 -1.8 -5.5 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS27060 -1.7 -1.6 photosystem reaction center subunit H compare
BPHYT_RS02540 -1.7 -1.8 hypothetical protein compare
BPHYT_RS29720 -1.7 -1.3 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
BPHYT_RS06530 -1.7 -1.5 membrane protein compare
BPHYT_RS27175 -1.7 -1.0 DNA-binding protein compare
BPHYT_RS30265 -1.7 -1.1 hypothetical protein compare
BPHYT_RS28965 -1.7 -1.8 hypothetical protein compare
BPHYT_RS11050 -1.7 -1.3 molecular chaperone compare
BPHYT_RS04335 -1.7 -1.5 membrane protein compare
BPHYT_RS15075 -1.6 -2.1 dihydrokaempferol 4-reductase compare
BPHYT_RS14055 -1.5 -8.5 aldose epimerase compare
BPHYT_RS03570 -1.5 -4.5 heat-inducible transcription repressor HrcA compare
BPHYT_RS09860 -1.5 -1.0 pilus assembly protein PilP compare
BPHYT_RS27655 -1.5 -1.4 potassium transporter compare
BPHYT_RS33360 -1.4 -2.4 formyl-CoA transferase compare
BPHYT_RS19770 -1.4 -1.7 ArsR family transcriptional regulator compare
BPHYT_RS08950 -1.4 -4.3 aminotransferase compare
BPHYT_RS36275 -1.4 -1.5 hypothetical protein compare
BPHYT_RS22860 -1.4 -0.9 chemotaxis protein CheY compare
BPHYT_RS08150 -1.4 -1.0 membrane protein compare
BPHYT_RS07635 -1.4 -2.7 alkanesulfonate monooxygenase compare
BPHYT_RS17265 -1.3 -1.3 cell division protein compare
BPHYT_RS11825 -1.3 -1.0 cytosine deaminase compare
BPHYT_RS26660 -1.3 -2.5 precorrin-4 C11-methyltransferase compare
BPHYT_RS26025 -1.3 -0.9 hypothetical protein compare
BPHYT_RS03215 -1.3 -2.3 TetR family transcriptional regulator compare
BPHYT_RS21595 -1.3 -1.5 TetR family transcriptional regulator compare
BPHYT_RS03495 -1.3 -2.3 hypothetical protein compare
BPHYT_RS03015 -1.3 -1.0 aldolase compare
BPHYT_RS17760 -1.3 -3.1 ABC transporter permease compare
BPHYT_RS35230 -1.3 -1.4 type 11 methyltransferase compare
BPHYT_RS16975 -1.2 -2.8 shikimate 5-dehydrogenase compare
BPHYT_RS13220 -1.2 -2.9 phosphomethylpyrimidine synthase compare
BPHYT_RS07900 -1.2 -1.6 hypothetical protein compare
BPHYT_RS02285 -1.2 -4.5 cell division protein compare
BPHYT_RS10540 -1.2 -0.9 secretion protein compare
BPHYT_RS07540 -1.2 -1.1 hypothetical protein compare
BPHYT_RS03580 -1.2 -1.7 RNA-binding protein S4 compare
BPHYT_RS20170 -1.2 -2.0 sugar transporter compare
BPHYT_RS34975 -1.2 -1.9 L-aspartate dehydrogenase compare
BPHYT_RS15710 -1.2 -2.0 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS24685 -1.2 -3.4 LysR family transcriptional regulator compare
BPHYT_RS32675 -1.2 -1.5 2-methylcitrate dehydratase compare
BPHYT_RS14900 -1.2 -1.9 prephenate dehydrogenase compare
BPHYT_RS13170 -1.1 -2.2 ATPase compare
BPHYT_RS29640 -1.1 -2.6 NAD-dependent deacetylase compare
BPHYT_RS33150 -1.1 -0.8 beta-lactamase compare
BPHYT_RS04095 -1.1 -1.2 SAM-dependent methyltransferase PhcB compare
BPHYT_RS09415 -1.1 -2.6 carboxylesterase compare
BPHYT_RS09735 -1.1 -1.7 glycosyl transferase compare
BPHYT_RS32260 -1.1 -1.6 hypothetical protein compare
BPHYT_RS27085 -1.1 -1.4 alkylhydroperoxidase compare
BPHYT_RS28285 -1.1 -1.3 MFS transporter compare
BPHYT_RS31320 -1.1 -1.4 hypothetical protein compare
BPHYT_RS21505 -1.1 -1.8 amidohydrolase compare
BPHYT_RS33155 -1.1 -1.6 hypothetical protein compare
BPHYT_RS01630 -1.1 -1.4 ATP-dependent protease ATPase subunit HslU compare
BPHYT_RS30645 -1.1 -1.6 hypothetical protein compare
BPHYT_RS22580 -1.1 -1.2 transcriptional regulator compare
BPHYT_RS15565 -1.1 -1.8 membrane protein compare
BPHYT_RS06105 -1.1 -1.3 hypothetical protein compare
BPHYT_RS00115 -1.1 -1.0 acetaldehyde dehydrogenase compare
BPHYT_RS26435 -1.1 -0.8 hypothetical protein compare
BPHYT_RS30040 -1.0 -1.0 hypothetical protein compare
BPHYT_RS20425 -1.0 -2.6 hypothetical protein compare
BPHYT_RS17240 -1.0 -1.1 cell division protein FtsW compare
BPHYT_RS12845 -1.0 -6.6 ATPase compare
BPHYT_RS14060 -1.0 -1.3 peptidase M23 compare
BPHYT_RS09850 -1.0 -1.0 molybdopterin oxidoreductase compare
BPHYT_RS01730 -1.0 -1.8 serine/threonine protein kinase compare
BPHYT_RS15190 -1.0 -1.3 acyl carrier protein compare
BPHYT_RS15615 -1.0 -2.2 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS12815 -1.0 -3.1 IclR family transcriptional regulator compare
BPHYT_RS21990 -1.0 -1.2 FAD-dependent oxidoreductase compare
BPHYT_RS22455 -1.0 -0.8 phosphonate ABC transporter substrate-binding protein compare
BPHYT_RS17520 -1.0 -2.7 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS12510 -1.0 -1.4 RNA-binding protein compare
BPHYT_RS31440 -1.0 -1.8 hypothetical protein compare
BPHYT_RS31950 -1.0 -1.5 short-chain dehydrogenase compare
BPHYT_RS07220 -1.0 -1.5 GCN5 family acetyltransferase compare
BPHYT_RS11000 -1.0 -1.6 glutathione S-transferase compare
BPHYT_RS06435 -1.0 -1.0 hypothetical protein compare
BPHYT_RS13320 -1.0 -0.9 allantoate amidohydrolase compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source N-Acetyl-D-Glucosamine in Burkholderia phytofirmans PsJN

For nitrogen source N-Acetyl-D-Glucosamine across organisms