Experiment set3IT074 for Rhodanobacter denitrificans FW104-10B01

Compare to:

R2A with SpecU metal mix 1 X

200 most important genes:

  gene name fitness t score description  
LRK54_RS05350 -4.3 -7.1 manganese efflux pump MntP family protein compare
LRK54_RS10660 -3.9 -2.6 DUF4156 domain-containing protein compare
LRK54_RS07285 -3.8 -25.4 sulfatase-like hydrolase/transferase compare
LRK54_RS10120 -3.8 -29.4 glycosyltransferase family 39 protein compare
LRK54_RS15090 -3.7 -10.1 hypothetical protein compare
LRK54_RS16665 -3.6 -11.0 peptidoglycan DD-metalloendopeptidase family protein compare
LRK54_RS12950 -3.5 -12.4 DUF2066 domain-containing protein compare
LRK54_RS05685 -3.5 -17.5 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
LRK54_RS12010 -3.5 -11.0 response regulator transcription factor compare
LRK54_RS02440 -3.4 -3.3 RNA polymerase-binding protein DksA compare
LRK54_RS06885 -3.4 -4.0 rhodanese-like domain-containing protein compare
LRK54_RS11830 -3.4 -23.4 penicillin-binding protein 1A compare
LRK54_RS00440 -3.2 -5.4 high frequency lysogenization protein HflD compare
LRK54_RS00620 -3.2 -8.1 FtsH protease activity modulator HflK compare
LRK54_RS14590 -3.2 -6.8 N-acetylmuramoyl-L-alanine amidase compare
LRK54_RS02895 -3.2 -8.0 rhomboid family intramembrane serine protease compare
LRK54_RS12185 -3.2 -16.7 penicillin-binding protein activator compare
LRK54_RS05440 -3.2 -11.9 hypothetical protein compare
LRK54_RS16660 -3.2 -8.2 VTT domain-containing protein compare
LRK54_RS01290 -3.2 -13.6 glycosyltransferase family 9 protein compare
LRK54_RS09155 -3.2 -5.2 SPOR domain-containing protein compare
LRK54_RS14695 -3.2 -12.4 rhomboid family intramembrane serine protease compare
LRK54_RS06685 -3.1 -11.0 TolC family outer membrane protein compare
LRK54_RS01350 -3.1 -12.1 SPOR domain-containing protein compare
LRK54_RS16940 -3.1 -2.1 RNA polymerase sigma factor RpoE compare
LRK54_RS12015 -3.1 -18.9 HAMP domain-containing histidine kinase compare
LRK54_RS07075 -3.1 -10.1 magnesium-translocating P-type ATPase compare
LRK54_RS04350 -3.0 -2.1 phosphatidylcholine/phosphatidylserine synthase compare
LRK54_RS04545 -3.0 -11.7 hemin uptake protein HemP compare
LRK54_RS13760 -2.9 -7.9 trypsin-like peptidase domain-containing protein compare
LRK54_RS14825 -2.9 -4.3 protease HtpX compare
LRK54_RS12860 -2.8 -2.7 RNase adapter RapZ compare
LRK54_RS13830 -2.8 -10.1 SDR family NAD(P)-dependent oxidoreductase compare
LRK54_RS12460 -2.8 -1.9 hypothetical protein compare
LRK54_RS00085 -2.8 -1.9 tetratricopeptide repeat protein compare
LRK54_RS11055 -2.7 -15.9 lipid-binding SYLF domain-containing protein compare
LRK54_RS02435 -2.7 -22.4 TonB-dependent siderophore receptor compare
LRK54_RS11975 -2.7 -5.6 SLC13 family permease compare
LRK54_RS00615 -2.7 -7.4 protease modulator HflC compare
LRK54_RS09215 -2.7 -21.0 peptidoglycan DD-metalloendopeptidase family protein compare
LRK54_RS11405 -2.7 -14.6 ATP-binding protein compare
LRK54_RS17505 -2.7 -4.3 preprotein translocase subunit SecG compare
LRK54_RS04720 -2.6 -7.1 phosphoribosylformylglycinamidine synthase compare
LRK54_RS05415 -2.6 -7.2 TetR/AcrR family transcriptional regulator compare
LRK54_RS01295 -2.6 -2.8 DUF6165 family protein compare
LRK54_RS16950 -2.6 -17.2 Do family serine endopeptidase compare
LRK54_RS16865 -2.6 -9.4 protein phosphatase 2C domain-containing protein compare
LRK54_RS16735 -2.6 -15.1 endopeptidase La compare
LRK54_RS11395 -2.6 -9.9 proteobacterial dedicated sortase system response regulator compare
LRK54_RS12295 -2.6 -4.7 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
LRK54_RS08760 -2.5 -2.5 transaldolase compare
LRK54_RS06755 -2.5 -18.3 LTA synthase family protein compare
LRK54_RS05980 -2.5 -1.7 ATP-binding protein compare
LRK54_RS04025 -2.5 -2.0 diacylglycerol kinase compare
LRK54_RS03290 -2.5 -1.7 RIP metalloprotease RseP compare
LRK54_RS18050 -2.5 -12.8 lipopolysaccharide assembly protein LapB compare
LRK54_RS06470 -2.5 -10.4 carboxy terminal-processing peptidase compare
LRK54_RS05630 -2.5 -8.3 D-sedoheptulose 7-phosphate isomerase compare
LRK54_RS02855 -2.4 -6.3 type I restriction-modification system subunit M compare
LRK54_RS15035 -2.4 -4.8 M48 family metalloprotease compare
LRK54_RS07215 -2.4 -6.9 cytochrome c4 compare
LRK54_RS15170 -2.4 -13.3 FKBP-type peptidyl-prolyl cis-trans isomerase compare
LRK54_RS02090 -2.4 -15.5 NAD-glutamate dehydrogenase compare
LRK54_RS04585 -2.3 -6.0 muramoyltetrapeptide carboxypeptidase compare
LRK54_RS12775 -2.3 -13.6 CDF family Co(II)/Ni(II) efflux transporter DmeF compare
LRK54_RS05650 -2.3 -3.5 ABC transporter ATP-binding protein compare
LRK54_RS00670 -2.3 -3.8 OmpA family protein compare
LRK54_RS11290 -2.3 -2.6 dihydrolipoyllysine-residue acetyltransferase compare
LRK54_RS05985 -2.3 -1.6 response regulator transcription factor compare
LRK54_RS16755 -2.3 -4.0 SurA N-terminal domain-containing protein compare
LRK54_RS03895 -2.3 -14.1 lipopolysaccharide biosynthesis protein compare
LRK54_RS00680 -2.2 -11.0 TerC family protein compare
LRK54_RS06785 -2.2 -1.5 protein-disulfide reductase DsbD compare
LRK54_RS11565 -2.2 -4.3 anthranilate phosphoribosyltransferase compare
LRK54_RS11170 -2.2 -4.3 NADP-dependent malic enzyme compare
LRK54_RS03710 -2.2 -8.9 tetratricopeptide repeat protein compare
LRK54_RS16720 -2.2 -9.2 trigger factor compare
LRK54_RS05655 -2.2 -1.5 ABC transporter permease compare
LRK54_RS12865 -2.1 -8.0 HPr(Ser) kinase/phosphatase compare
LRK54_RS02460 -2.1 -10.9 phosphoglycolate phosphatase compare
LRK54_RS09180 -2.1 -16.6 phosphomannomutase/phosphoglucomutase compare
LRK54_RS16740 -2.1 -3.5 HU family DNA-binding protein compare
LRK54_RS01585 -2.1 -8.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
LRK54_RS04365 -2.1 -1.8 H-NS histone family protein compare
LRK54_RS00815 -2.1 -7.2 pseudouridine synthase compare
LRK54_RS06675 -2.1 -8.2 TetR/AcrR family transcriptional regulator compare
LRK54_RS07155 -2.0 -13.4 ankyrin repeat domain-containing protein compare
LRK54_RS09000 -2.0 -12.8 HAMP domain-containing histidine kinase compare
LRK54_RS00420 -2.0 -15.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
LRK54_RS12190 -2.0 -8.3 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
LRK54_RS01685 -2.0 -11.8 tryptophan synthase subunit beta compare
LRK54_RS01580 -1.9 -8.3 imidazole glycerol phosphate synthase subunit HisF compare
LRK54_RS01680 -1.9 -6.9 tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data) compare
LRK54_RS00405 -1.9 -5.8 FHA domain-containing protein compare
LRK54_RS12670 -1.9 -9.3 glycosyltransferase compare
LRK54_RS02445 -1.9 -3.4 membrane protein insertion efficiency factor YidD compare
LRK54_RS12625 -1.9 -10.1 bifunctional aspartate kinase/diaminopimelate decarboxylase compare
LRK54_RS02335 -1.9 -9.3 FUSC family protein compare
LRK54_RS12855 -1.9 -5.6 PTS fructose transporter subunit IIA compare
LRK54_RS07620 -1.9 -9.0 efflux RND transporter periplasmic adaptor subunit compare
LRK54_RS05990 -1.9 -10.0 hypothetical protein compare
LRK54_RS00805 -1.9 -3.9 segregation/condensation protein A compare
LRK54_RS12945 -1.9 -8.2 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK54_RS03110 -1.9 -8.9 nucleotidyltransferase family protein compare
LRK54_RS02535 -1.8 -5.7 50S ribosomal protein L9 compare
LRK54_RS16160 -1.8 -1.9 DUF1674 domain-containing protein compare
LRK54_RS00675 -1.8 -10.4 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
LRK54_RS16730 -1.8 -2.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
LRK54_RS10185 -1.8 -14.2 RDD family protein compare
LRK54_RS04450 -1.8 -8.2 efflux RND transporter periplasmic adaptor subunit compare
LRK54_RS01590 -1.7 -9.6 imidazole glycerol phosphate synthase subunit HisH compare
LRK54_RS04920 -1.7 -9.2 YebC/PmpR family DNA-binding transcriptional regulator compare
LRK54_RS11175 -1.7 -8.4 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK54_RS17015 -1.7 -11.8 hypoxanthine-guanine phosphoribosyltransferase compare
LRK54_RS05645 -1.7 -12.5 glycosyltransferase compare
LRK54_RS05640 -1.7 -9.0 GDP-mannose 4,6-dehydratase compare
LRK54_RS16945 -1.7 -5.3 sigma-E factor negative regulatory protein compare
LRK54_RS00560 -1.6 -8.6 hypothetical protein compare
LRK54_RS15105 -1.6 -6.7 polynucleotide adenylyltransferase PcnB compare
LRK54_RS06515 -1.6 -5.5 rod shape-determining protein MreD compare
LRK54_RS17270 -1.6 -2.8 DNA translocase FtsK compare
LRK54_RS11570 -1.6 -4.5 indole-3-glycerol phosphate synthase TrpC compare
LRK54_RS03405 -1.6 -8.1 ribonuclease G compare
LRK54_RS10930 -1.6 -12.4 permease-like cell division protein FtsX compare
LRK54_RS12595 -1.6 -4.8 (2Fe-2S)-binding protein compare
LRK54_RS12590 -1.6 -11.1 molybdopterin-dependent oxidoreductase compare
LRK54_RS00695 -1.6 -5.3 methylisocitrate lyase compare
LRK54_RS11995 -1.6 -11.1 tRNA-Gly compare
LRK54_RS05785 -1.6 -6.8 type I glyceraldehyde-3-phosphate dehydrogenase compare
LRK54_RS01280 -1.5 -2.2 MBL fold metallo-hydrolase compare
LRK54_RS00080 -1.5 -9.4 helix-turn-helix domain-containing protein compare
LRK54_RS14670 -1.5 -2.3 NrsF family protein compare
LRK54_RS11765 -1.5 -8.7 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
LRK54_RS00690 -1.5 -9.9 2-methylcitrate synthase compare
LRK54_RS00705 -1.5 -9.3 alkyl hydroperoxide reductase subunit C compare
LRK54_RS13910 -1.5 -6.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA compare
LRK54_RS05635 -1.5 -8.9 dehydrogenase compare
LRK54_RS05495 -1.5 -4.9 met regulon transcriptional regulator MetJ compare
LRK54_RS10955 -1.4 -11.0 peptidoglycan DD-metalloendopeptidase family protein compare
LRK54_RS02180 -1.4 -7.2 UvrD-helicase domain-containing protein compare
LRK54_RS07615 -1.4 -12.1 efflux RND transporter permease subunit compare
LRK54_RS08585 -1.4 -12.3 RimK family alpha-L-glutamate ligase compare
LRK54_RS03125 -1.4 -1.8 preprotein translocase subunit YajC compare
LRK54_RS02175 -1.4 -7.8 exodeoxyribonuclease V subunit gamma compare
LRK54_RS00345 -1.4 -3.8 TraB/GumN family protein compare
LRK54_RS08750 -1.4 -4.5 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
LRK54_RS09835 -1.4 -8.1 c-type cytochrome compare
LRK54_RS07625 -1.4 -7.4 TolC family protein compare
LRK54_RS03925 -1.4 -9.4 glycosyltransferase family 4 protein compare
LRK54_RS03930 -1.3 -9.6 glycosyltransferase family 2 protein compare
LRK54_RS10355 -1.3 -2.5 threonine synthase compare
LRK54_RS17555 -1.3 -10.5 CusA/CzcA family heavy metal efflux RND transporter compare
LRK54_RS17560 -1.3 -5.3 efflux RND transporter periplasmic adaptor subunit compare
LRK54_RS14460 -1.3 -7.2 septum site-determining protein MinD compare
LRK54_RS12305 -1.3 -8.6 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
LRK54_RS14560 -1.3 -8.8 hypothetical protein compare
LRK54_RS16615 -1.3 -2.1 phosphopyruvate hydratase compare
LRK54_RS11775 -1.3 -10.2 ABC transporter substrate-binding protein compare
LRK54_RS16650 -1.3 -6.0 5'/3'-nucleotidase SurE compare
LRK54_RS11785 -1.3 -10.5 VacJ family lipoprotein compare
LRK54_RS01235 -1.3 -11.0 Slp family lipoprotein compare
LRK54_RS00810 -1.3 -3.5 SMC-Scp complex subunit ScpB compare
LRK54_RS03105 -1.3 -8.7 phosphotransferase compare
LRK54_RS02325 -1.3 -3.0 SDR family oxidoreductase compare
LRK54_RS01410 -1.3 -10.2 ABC transporter ATP-binding protein/permease compare
LRK54_RS05610 -1.3 -7.0 GtrA family protein compare
LRK54_RS02550 -1.2 -3.8 iron-sulfur cluster assembly accessory protein compare
LRK54_RS02265 -1.2 -10.8 ferrous iron transporter B compare
LRK54_RS07605 -1.2 -7.5 ATP-binding protein compare
LRK54_RS16930 -1.2 -8.3 hypothetical protein compare
LRK54_RS15935 -1.2 -7.5 rRNA pseudouridine synthase compare
LRK54_RS07085 -1.2 -10.5 heme o synthase compare
LRK54_RS06490 -1.2 -9.3 D-alanyl-D-alanine carboxypeptidase compare
LRK54_RS05775 -1.2 -7.6 pyruvate kinase compare
LRK54_RS04615 -1.2 -4.9 transcriptional regulator NrdR compare
LRK54_RS04630 -1.2 -1.5 energy-dependent translational throttle protein EttA compare
LRK54_RS10950 -1.2 -8.5 S41 family peptidase compare
LRK54_RS16875 -1.2 -10.2 kinase/pyrophosphorylase compare
LRK54_RS08670 -1.2 -7.9 LacI family transcriptional regulator compare
LRK54_RS16935 -1.2 -9.8 bifunctional diguanylate cyclase/phosphodiesterase compare
LRK54_RS02380 -1.2 -4.9 argininosuccinate lyase compare
LRK54_RS12005 -1.2 -6.8 30S ribosomal protein S6--L-glutamate ligase compare
LRK54_RS17565 -1.2 -9.8 TolC family protein compare
LRK54_RS15030 -1.2 -8.1 phosphate regulon transcriptional regulator PhoB compare
LRK54_RS12725 -1.2 -8.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
LRK54_RS16600 -1.2 -8.3 aminopeptidase P family protein compare
LRK54_RS10855 -1.2 -3.6 protein-export chaperone SecB compare
LRK54_RS07090 -1.2 -9.8 COX15/CtaA family protein compare
LRK54_RS09945 -1.2 -5.4 class I SAM-dependent methyltransferase compare
LRK54_RS11385 -1.2 -3.6 co-chaperone DjlA compare
LRK54_RS09805 -1.2 -4.8 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK54_RS06610 -1.2 -9.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
LRK54_RS08125 -1.1 -6.5 undecaprenyl-diphosphate phosphatase compare
LRK54_RS02185 -1.1 -3.8 exodeoxyribonuclease V subunit alpha compare
LRK54_RS10925 -1.1 -2.1 cell division ATP-binding protein FtsE compare
LRK54_RS02520 -1.1 -5.9 cytochrome c biogenesis protein CcsA compare
LRK54_RS05200 -1.1 -2.0 hypothetical protein compare
LRK54_RS01285 -1.1 -4.4 3-deoxy-D-manno-octulosonic acid kinase compare
LRK54_RS11560 -1.1 -2.9 aminodeoxychorismate/anthranilate synthase component II compare
LRK54_RS16110 -1.1 -7.0 polyhydroxyalkanoate synthesis repressor PhaR compare


Specific Phenotypes

For 15 genes in this experiment

For stress SpecU in Rhodanobacter denitrificans FW104-10B01

For stress SpecU across organisms