Experiment set3IT074 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with 5-Hydroxymethylfurfural 10 mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -6.3 -6.2 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_2258 -5.5 -12.4 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_3253 -5.5 -8.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_4803 -5.1 -3.5 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_4153 -5.0 -3.4 Sensory box histidine kinase compare
Pf6N2E2_3842 -4.5 -5.7 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3665 -4.5 -2.1 serine/threonine protein kinase compare
Pf6N2E2_3782 -4.5 -5.8 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_2218 -4.4 -6.7 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_3839 -4.4 -6.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_5671 -4.1 -5.6 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_3252 -3.9 -8.9 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5242 -3.9 -3.7 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_3610 -3.8 -5.9 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_156 -3.7 -3.5 Carbon storage regulator compare
Pf6N2E2_5156 -3.7 -3.6 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_2320 -3.7 -4.9 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_3198 -3.7 -3.5 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_5527 -3.6 -4.0 Cold shock protein CspC compare
Pf6N2E2_2274 -3.6 -6.2 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_5178 -3.6 -3.4 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_3783 -3.5 -5.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_3841 -3.5 -8.5 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_4352 -3.5 -5.4 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_3461 -3.5 -2.3 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_4353 -3.5 -6.7 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_5520 -3.2 -9.5 Sensory box histidine kinase compare
Pf6N2E2_4159 -3.2 -5.7 Cytochrome c4 compare
Pf6N2E2_3611 -3.2 -2.4 HflC protein compare
Pf6N2E2_3908 -3.1 -8.8 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_5150 -3.1 -5.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_5331 -2.9 -7.5 ATPase, AFG1 family compare
Pf6N2E2_5155 -2.9 -3.8 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_2318 -2.8 -8.4 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2899 -2.7 -6.8 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_3940 -2.7 -9.7 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_5338 -2.6 -9.4 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_5339 -2.6 -8.6 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_2755 -2.5 -2.8 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_4454 -2.4 -5.8 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_2526 -2.4 -5.3 Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase compare
Pf6N2E2_2313 -2.4 -4.7 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_4612 -2.4 -4.8 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_5337 -2.4 -4.5 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_3199 -2.3 -8.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_309 -2.3 -2.4 FIG00957702: hypothetical protein compare
Pf6N2E2_2753 -2.3 -3.7 HtrA protease/chaperone protein compare
Pf6N2E2_4614 -2.2 -4.7 twitching motility protein PilH compare
Pf6N2E2_2552 -2.2 -5.5 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_3521 -2.2 -8.3 Sensor histidine kinase/response regulator compare
Pf6N2E2_6064 -2.2 -6.1 2-methylaconitate isomerase compare
Pf6N2E2_6063 -2.2 -7.4 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_2217 -2.2 -6.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_4611 -2.1 -4.1 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2261 -2.1 -8.4 VacJ-like lipoprotein precursor compare
Pf6N2E2_2189 -2.1 -6.6 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_2310 -2.1 -10.0 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_623 -2.1 -1.9 FIG00954674: hypothetical protein compare
Pf6N2E2_3460 -2.1 -2.4 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_4618 -2.0 -3.8 Chemotaxis signal transduction protein compare
Pf6N2E2_3612 -2.0 -2.9 HflK protein compare
Pf6N2E2_3258 -2.0 -5.7 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_4417 -2.0 -4.0 Protein of unknown function DUF484 compare
Pf6N2E2_3656 -2.0 -6.3 Probable transcription regulator Mig-14 compare
Pf6N2E2_1056 -1.9 -2.1 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_2219 -1.9 -2.9 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_5494 -1.9 -5.5 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_945 -1.9 -3.1 Transcriptional regulator, TetR family compare
Pf6N2E2_5316 -1.8 -2.8 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_4165 -1.8 -5.7 Zinc ABC transporter, periplasmic-binding protein ZnuA compare
Pf6N2E2_4451 -1.8 -6.9 FIG139438: lipoprotein B compare
Pf6N2E2_2527 -1.7 -4.4 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_5321 -1.7 -8.8 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_4416 -1.7 -3.2 Tyrosine recombinase XerC compare
Pf6N2E2_5320 -1.7 -8.5 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_2311 -1.7 -6.1 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_3607 -1.7 -6.5 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_6140 -1.7 -1.5 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_3941 -1.7 -3.3 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_2384 -1.7 -3.5 CmpX compare
Pf6N2E2_1116 -1.7 -1.9 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_3260 -1.6 -5.4 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_5223 -1.6 -3.3 Molybdopterin biosynthesis protein MoeB compare
Pf6N2E2_5928 -1.6 -8.9 ABC-type multidrug transport system, permease component conserved
Pf6N2E2_4162 -1.6 -3.5 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_2447 -1.6 -5.9 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_2264 -1.6 -3.1 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_2282 -1.6 -3.7 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_5430 -1.6 -8.3 Transglycosylase, Slt family compare
Pf6N2E2_5318 -1.5 -12.1 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf6N2E2_2754 -1.5 -3.7 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf6N2E2_4372 -1.5 -4.8 FIG00460773: hypothetical protein compare
Pf6N2E2_5317 -1.5 -10.1 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf6N2E2_4092 -1.5 -4.2 FIG00954395: hypothetical protein compare
Pf6N2E2_1625 -1.5 -2.7 Ferric reductase (1.6.99.14) compare
Pf6N2E2_3655 -1.5 -8.6 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_4206 -1.5 -1.5 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_2487 -1.5 -1.5 FIG00956090: hypothetical protein compare
Pf6N2E2_3661 -1.5 -4.4 hypothetical protein compare
Pf6N2E2_5536 -1.4 -1.7 Holliday junction DNA helicase RuvA compare
Pf6N2E2_4889 -1.4 -5.2 Putative transport protein compare
Pf6N2E2_5226 -1.4 -1.7 FIG00955589: hypothetical protein compare
Pf6N2E2_4638 -1.4 -3.4 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_4276 -1.4 -3.9 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_82 -1.4 -2.4 hypothetical protein compare
Pf6N2E2_4075 -1.4 -4.4 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_5319 -1.4 -5.3 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_4585 -1.4 -8.9 Cell division protein FtsX compare
Pf6N2E2_4987 -1.4 -1.5 MaoC-like domain protein compare
Pf6N2E2_5574 -1.4 -6.6 Glycerol kinase (EC 2.7.1.30) compare
Pf6N2E2_3151 -1.4 -2.9 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_5956 -1.4 -5.0 FIG004453: protein YceG like compare
Pf6N2E2_5544 -1.4 -6.3 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_5725 -1.4 -4.6 nucleoprotein/polynucleotide-associated enzyme compare
Pf6N2E2_4963 -1.3 -1.7 Homoserine dehydrogenase (EC 1.1.1.3) compare
Pf6N2E2_634 -1.3 -7.4 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Pf6N2E2_5733 -1.3 -5.6 NLP/P60 family protein compare
Pf6N2E2_5340 -1.3 -4.4 Stringent starvation protein A compare
Pf6N2E2_5508 -1.3 -2.2 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_2440 -1.3 -1.6 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_3257 -1.3 -2.8 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_4047 -1.3 -4.0 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_5677 -1.3 -1.8 Carbon storage regulator compare
Pf6N2E2_2872 -1.3 -7.0 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_2508 -1.3 -3.3 hypothetical protein compare
Pf6N2E2_4187 -1.3 -3.2 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_1352 -1.3 -2.8 Cation transport ATPase compare
Pf6N2E2_3791 -1.2 -6.4 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_2317 -1.2 -3.8 Putative analog of CcoH, COG3198 compare
Pf6N2E2_3251 -1.2 -7.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_4168 -1.2 -4.9 Zinc ABC transporter, inner membrane permease protein ZnuB compare
Pf6N2E2_2706 -1.2 -2.3 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_3792 -1.2 -4.7 Glucans biosynthesis protein G precursor compare
Pf6N2E2_2586 -1.2 -1.7 Hpt domain protein compare
Pf6N2E2_5962 -1.2 -5.1 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_4810 -1.2 -5.4 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf6N2E2_4362 -1.2 -2.1 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_2422 -1.2 -5.7 Molybdopterin biosynthesis protein MoeA compare
Pf6N2E2_2012 -1.2 -2.1 hypothetical protein compare
Pf6N2E2_1797 -1.2 -1.6 Transcriptional regulator compare
Pf6N2E2_3560 -1.1 -4.3 membrane protein, putative compare
Pf6N2E2_5927 -1.1 -4.2 ABC-type multidrug transport system, ATPase component compare
Pf6N2E2_3658 -1.1 -6.3 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_3283 -1.1 -4.9 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf6N2E2_5133 -1.1 -2.7 FIG00953980: hypothetical protein compare
Pf6N2E2_5669 -1.1 -4.3 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf6N2E2_3786 -1.1 -2.1 Twin-arginine translocation protein TatC compare
Pf6N2E2_2820 -1.1 -6.3 NADH:flavin oxidoreductases, Old Yellow Enzyme family compare
Pf6N2E2_2180 -1.1 -2.3 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_4439 -1.1 -6.5 Glutathione-regulated potassium-efflux system ATP-binding protein conserved
Pf6N2E2_4918 -1.1 -2.4 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_4205 -1.1 -2.9 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_2835 -1.1 -2.7 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf6N2E2_3280 -1.1 -6.8 TldD protein, part of TldE/TldD proteolytic complex compare
Pf6N2E2_144 -1.0 -8.6 Uncharacterized protein YtfM precursor compare
Pf6N2E2_4072 -1.0 -3.7 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_5575 -1.0 -4.7 Glycerol uptake facilitator protein compare
Pf6N2E2_5668 -1.0 -3.3 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
Pf6N2E2_4120 -1.0 -6.8 Trk system potassium uptake protein TrkA compare
Pf6N2E2_5505 -1.0 -1.4 hypothetical protein compare
Pf6N2E2_98 -1.0 -1.1 putative transmembrane protein compare
Pf6N2E2_5111 -1.0 -1.8 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_5622 -1.0 -3.1 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_75 -1.0 -2.2 Colicin V production protein compare
Pf6N2E2_1796 -1.0 -2.5 Glycine cleavage system transcriptional activator GcvA compare
Pf6N2E2_2010 -1.0 -1.8 hypothetical protein compare
Pf6N2E2_3885 -1.0 -2.2 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_4984 -1.0 -1.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3641 -1.0 -1.8 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Pf6N2E2_2428 -1.0 -3.1 Thiol-disulfide isomerase and thioredoxins compare
Pf6N2E2_3255 -1.0 -2.4 YrbA protein compare
Pf6N2E2_2309 -1.0 -1.8 hypothetical protein compare
Pf6N2E2_3586 -1.0 -4.4 NAD synthetase (EC 6.3.1.5) compare
Pf6N2E2_4766 -1.0 -7.4 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf6N2E2_2694 -0.9 -5.9 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) compare
Pf6N2E2_525 -0.9 -4.4 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_4146 -0.9 -1.5 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Pf6N2E2_2885 -0.9 -3.7 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_3351 -0.9 -3.1 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_3003 -0.9 -2.5 Bacteriophage protein GP46 compare
Pf6N2E2_4999 -0.9 -5.0 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_2572 -0.9 -1.7 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_2473 -0.9 -1.1 Major outer membrane lipoprotein I compare
Pf6N2E2_4486 -0.9 -2.8 Glycine cleavage system H protein compare
Pf6N2E2_4279 -0.9 -6.0 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_4067 -0.9 -4.7 Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) compare
Pf6N2E2_2588 -0.9 -2.8 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_3617 -0.9 -2.3 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_3834 -0.9 -3.0 Lipoprotein NlpD compare
Pf6N2E2_145 -0.9 -5.1 putative exported protein compare
Pf6N2E2_2325 -0.8 -3.3 Recombination protein RecR compare
Pf6N2E2_4907 -0.8 -5.9 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
Pf6N2E2_2316 -0.8 -5.6 Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation compare
Pf6N2E2_1696 -0.8 -2.4 Alkanesulfonates-binding protein compare
Pf6N2E2_3659 -0.8 -3.0 Protein fixF compare
Pf6N2E2_841 -0.8 -1.4 hypothetical protein compare
Pf6N2E2_4273 -0.8 -4.2 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_5945 -0.8 -3.6 Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C compare
Pf6N2E2_4204 -0.8 -1.2 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_3134 -0.8 -0.8 hypothetical protein compare


Specific Phenotypes

For 14 genes in this experiment

For stress 5-Hydroxymethylfurfural in Pseudomonas fluorescens FW300-N2E2

For stress 5-Hydroxymethylfurfural across organisms