Experiment set3IT074 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Xantho_MME_glucose_dropout_LTH

200 most important genes:

  gene name fitness t score description  
Xcc-8004.622.1 -5.5 -5.3 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Xcc-8004.2945.1 -5.3 -3.6 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Xcc-8004.5192.1 -5.0 -11.5 hypothetical protein compare
Xcc-8004.1049.1 -4.9 -8.8 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Xcc-8004.2947.1 -4.7 -3.2 Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
Xcc-8004.271.1 -4.6 -3.2 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.1962.1 -4.3 -4.3 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Xcc-8004.4481.1 -4.3 -8.7 hypothetical protein compare
Xcc-8004.2946.1 -4.2 -4.1 Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Xcc-8004.1050.1 -4.2 -5.5 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Xcc-8004.1053.1 -4.2 -6.9 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Xcc-8004.1964.1 -4.1 -10.9 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Xcc-8004.5193.1 -4.1 -21.8 Outer membrane protein assembly factor YaeT precursor compare
Xcc-8004.621.1 -4.1 -5.0 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Xcc-8004.2944.1 -3.9 -6.5 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) compare
Xcc-8004.1615.1 -3.6 -2.5 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.3537.1 -3.6 -6.8 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) compare
Xcc-8004.618.1 -3.6 -5.3 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Xcc-8004.4620.1 -3.6 -10.9 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.608.1 -3.5 -12.8 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Xcc-8004.1010.1 -3.5 -7.7 Aspartate aminotransferase (EC 2.6.1.1) compare
Xcc-8004.2079.1 -3.4 -4.6 Outer membrane protein GumB, involved in the export of xanthan compare
Xcc-8004.2942.1 -3.4 -5.5 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
Xcc-8004.1372.1 -3.4 -5.5 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.4111.1 -3.3 -8.9 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase II (EC 2.5.1.54) compare
Xcc-8004.5020.1 -3.3 -6.3 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Xcc-8004.657.1 -3.2 -9.6 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
Xcc-8004.130.1 -3.1 -9.3 hypothetical protein compare
Xcc-8004.659.1 -3.0 -3.9 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.2948.1 -2.9 -6.3 Histidinol dehydrogenase (EC 1.1.1.23) compare
Xcc-8004.2406.1 -2.9 -11.5 Manganese transport protein MntH compare
Xcc-8004.623.1 -2.8 -3.7 Phosphoserine phosphatase compare
Xcc-8004.2011.1 -2.7 -3.9 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.2943.1 -2.7 -6.9 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) compare
Xcc-8004.1967.1 -2.6 -10.5 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Xcc-8004.2086.1 -2.5 -2.5 Xanthan biosynthesis glycosyltransferase GumH compare
Xcc-8004.1489.1 -2.5 -14.5 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I compare
Xcc-8004.2012.1 -2.5 -8.3 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.3281.1 -2.5 -7.1 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Xcc-8004.1196.1 -2.5 -7.7 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Xcc-8004.846.1 -2.4 -3.9 Protein of unknown function DUF484 compare
Xcc-8004.1955.1 -2.4 -6.8 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.4398.1 -2.4 -8.9 Serine hydroxymethyltransferase (EC 2.1.2.1) compare
Xcc-8004.505.1 -2.4 -9.0 Biotin synthase (EC 2.8.1.6) compare
Xcc-8004.1710.1 -2.4 -5.4 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
Xcc-8004.2449.1 -2.3 -5.0 Glucokinase (EC 2.7.1.2) compare
Xcc-8004.288.1 -2.3 -3.1 Ferredoxin compare
Xcc-8004.1359.1 -2.2 -6.9 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.914.1 -2.2 -9.1 tail-specific protease compare
Xcc-8004.2081.1 -2.2 -4.4 Xanthan biosynthesis chain length determinant protein GumC compare
Xcc-8004.3054.1 -2.1 -2.4 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.270.1 -2.1 -6.9 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.601.1 -2.1 -8.6 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.4364.1 -2.1 -7.0 Cell division protein MraZ compare
Xcc-8004.2931.1 -2.0 -4.8 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Xcc-8004.2861.1 -2.0 -3.2 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Xcc-8004.1241.1 -2.0 -6.5 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.4948.1 -2.0 -3.4 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Xcc-8004.2217.1 -1.9 -4.0 FIG01209779: hypothetical protein compare
Xcc-8004.3283.1 -1.9 -9.3 Phosphoserine aminotransferase (EC 2.6.1.52) compare
Xcc-8004.3742.1 -1.8 -3.3 Type III effector compare
Xcc-8004.2450.1 -1.8 -11.6 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Xcc-8004.4112.1 -1.8 -4.1 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.3445.1 -1.8 -3.2 hypothetical protein compare
Xcc-8004.3130.1 -1.8 -6.1 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Xcc-8004.2949.1 -1.8 -2.1 ATP phosphoribosyltransferase (EC 2.4.2.17) compare
Xcc-8004.3230.1 -1.7 -2.9 Phage DNA invertase compare
Xcc-8004.3313.1 -1.7 -4.3 LSU ribosomal protein L9p compare
Xcc-8004.2387.1 -1.7 -2.1 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Xcc-8004.1236.1 -1.6 -5.9 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.1436.1 -1.6 -1.9 Holliday junction DNA helicase RuvA compare
Xcc-8004.1657.1 -1.5 -2.6 PTS system, mannose-specific IIA component compare
Xcc-8004.4210.1 -1.5 -6.9 Thymidine phosphorylase (EC 2.4.2.4) compare
Xcc-8004.1056.1 -1.5 -2.4 2-isopropylmalate synthase (EC 2.3.3.13) compare
Xcc-8004.2337.1 -1.5 -4.5 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.2259.1 -1.5 -4.6 PhbF compare
Xcc-8004.4439.1 -1.4 -8.9 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
Xcc-8004.2922.1 -1.4 -2.2 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.2447.1 -1.4 -8.7 Phosphogluconate dehydratase (EC 4.2.1.12) compare
Xcc-8004.3815.1 -1.4 -3.1 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Xcc-8004.4824.1 -1.4 -8.6 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.2920.1 -1.4 -6.1 Ferrous iron transport protein B compare
Xcc-8004.3576.1 -1.4 -6.5 Intracellular PHB depolymerase (EC 3.1.1.-) compare
Xcc-8004.3328.1 -1.3 -4.9 Kynurenine 3-monooxygenase (EC 1.14.13.9) compare
Xcc-8004.4814.1 -1.3 -2.6 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Xcc-8004.1763.1 -1.3 -3.4 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.703.1 -1.3 -2.1 hypothetical protein compare
Xcc-8004.3014.1 -1.2 -3.6 putative ATPase, AAA+ family protein compare
Xcc-8004.4752.1 -1.2 -1.7 DNA topoisomerase I (EC 5.99.1.2) compare
Xcc-8004.3816.1 -1.2 -5.8 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Xcc-8004.5203.1 -1.2 -2.9 Twin-arginine translocation protein TatB compare
Xcc-8004.4836.1 -1.2 -4.7 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
Xcc-8004.99.1 -1.2 -2.7 FIG01211055: hypothetical protein compare
Xcc-8004.5343.1 -1.2 -5.5 hypothetical protein compare
Xcc-8004.340.1 -1.2 -2.9 Organic hydroperoxide resistance protein compare
Xcc-8004.1873.1 -1.2 -2.1 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Xcc-8004.2928.1 -1.2 -3.5 FIG01210777: hypothetical protein compare
Xcc-8004.234.1 -1.2 -8.1 cardiolipin synthase compare
Xcc-8004.2495.1 -1.2 -2.5 hypothetical protein compare
Xcc-8004.4026.1 -1.2 -4.5 FIG01209666: hypothetical protein compare
Xcc-8004.4539.1 -1.1 -6.0 Oligopeptidase A (EC 3.4.24.70) compare
Xcc-8004.1616.1 -1.1 -1.1 Shikimate kinase I (EC 2.7.1.71) compare
Xcc-8004.924.1 -1.1 -2.0 FIG01200701: possible membrane protein compare
Xcc-8004.94.1 -1.1 -2.1 Transcriptional regulator, LuxR family compare
Xcc-8004.5201.1 -1.1 -3.1 FIG01211164: hypothetical protein compare
Xcc-8004.2561.1 -1.1 -5.5 FIG01213638: hypothetical protein compare
Xcc-8004.2865.1 -1.1 -1.9 FIG01210234: hypothetical protein compare
Xcc-8004.4675.1 -1.1 -1.5 FIG01211280: hypothetical protein compare
Xcc-8004.3131.1 -1.1 -4.0 hypothetical protein compare
Xcc-8004.2936.1 -1.1 -7.3 Amino acid transporters compare
Xcc-8004.738.1 -1.1 -2.3 Malonate decarboxylase gamma subunit compare
Xcc-8004.2165.1 -1.1 -7.2 Ornithine aminotransferase (EC 2.6.1.13); Succinylornithine transaminase (EC 2.6.1.81); Acetylornithine aminotransferase (EC 2.6.1.11); N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) compare
Xcc-8004.3253.1 -1.0 -3.1 IncQ plasmid conjugative transfer protein TraG compare
Xcc-8004.1685.1 -1.0 -1.6 hypothetical protein compare
Xcc-8004.3817.1 -1.0 -3.5 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Xcc-8004.3310.1 -1.0 -3.4 Chromosome partition protein smc compare
Xcc-8004.4065.1 -1.0 -4.6 Exopolyphosphatase (EC 3.6.1.11) compare
Xcc-8004.3726.1 -1.0 -2.1 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Xcc-8004.2958.1 -1.0 -1.7 tryptophan-rich sensory protein compare
Xcc-8004.1891.1 -1.0 -1.9 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) compare
Xcc-8004.2754.1 -1.0 -6.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Xcc-8004.4985.1 -1.0 -5.8 Arginase (EC 3.5.3.1) compare
Xcc-8004.1725.1 -1.0 -3.6 Phenazine biosynthesis protein PhzF like compare
Xcc-8004.876.1 -1.0 -1.0 Mobile element protein compare
Xcc-8004.5182.1 -1.0 -3.6 hypothetical protein compare
Xcc-8004.2343.1 -1.0 -1.9 Cytochrome c-type biogenesis protein CcmE, heme chaperone compare
Xcc-8004.4538.1 -1.0 -2.0 hypothetical protein compare
Xcc-8004.2921.1 -1.0 -1.8 ferrous iron transport protein compare
Xcc-8004.4340.1 -0.9 -2.8 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) / Thiamin-phosphate pyrophosphorylase-like protein compare
Xcc-8004.1696.1 -0.9 -1.2 N-acetylglutamate synthase (EC 2.3.1.1) compare
Xcc-8004.2282.1 -0.9 -2.5 tRNA:Cm32/Um32 methyltransferase compare
Xcc-8004.27.1 -0.9 -2.0 hypothetical protein compare
Xcc-8004.3346.1 -0.9 -2.4 hypothetical protein compare
Xcc-8004.1676.1 -0.9 -4.2 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
Xcc-8004.2910.1 -0.9 -3.0 Regulatory protein, RpfE type compare
Xcc-8004.4001.1 -0.9 -1.5 FIG146278: Maf/YceF/YhdE family protein compare
Xcc-8004.4480.1 -0.9 -5.4 Phosphomannomutase (EC 5.4.2.8) compare
Xcc-8004.2989.1 -0.9 -2.7 hypothetical protein compare
Xcc-8004.1521.1 -0.9 -1.8 FIG01209895: hypothetical protein compare
Xcc-8004.5317.1 -0.9 -1.8 FIG01210332: hypothetical protein compare
Xcc-8004.1718.1 -0.9 -2.1 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Xcc-8004.3859.1 -0.9 -1.6 Two-component system regulatory protein compare
Xcc-8004.4073.1 -0.9 -6.0 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
Xcc-8004.2659.1 -0.9 -1.9 FIG01212223: hypothetical protein compare
Xcc-8004.2199.1 -0.9 -1.5 Hemerythrin-like protein PA1673 compare
Xcc-8004.3955.1 -0.9 -3.6 HflK protein compare
Xcc-8004.3498.1 -0.9 -1.1 hypothetical protein compare
Xcc-8004.3304.1 -0.9 -1.2 FIG01211108: hypothetical protein compare
Xcc-8004.713.1 -0.8 -1.2 FIG01210186: hypothetical protein compare
Xcc-8004.573.1 -0.8 -4.9 Tryptophan 2,3-dioxygenase (EC 1.13.11.11) compare
Xcc-8004.462.1 -0.8 -2.3 hypothetical protein compare
Xcc-8004.3296.1 -0.8 -2.9 Histidine ammonia-lyase (EC 4.3.1.3) compare
Xcc-8004.1124.1 -0.8 -1.8 RidA/YER057c/UK114 superfamily, group 3 compare
Xcc-8004.4699.1 -0.8 -1.6 Flagellar motor protein compare
Xcc-8004.1890.1 -0.8 -3.4 hypothetical protein compare
Xcc-8004.3483.1 -0.8 -4.3 Outer membrane protein A precursor compare
Xcc-8004.409.1 -0.8 -2.3 hypothetical protein compare
Xcc-8004.4046.1 -0.8 -5.1 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.252.1 -0.8 -4.3 Nitrogen regulation protein NtrC compare
Xcc-8004.3595.1 -0.8 -1.5 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Xcc-8004.2871.1 -0.8 -1.5 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.5252.1 -0.8 -3.6 FIG01210658: hypothetical protein compare
Xcc-8004.3652.1 -0.8 -2.4 FIG01211136: hypothetical protein compare
Xcc-8004.5280.1 -0.8 -2.3 hypothetical protein compare
Xcc-8004.3723.1 -0.8 -1.2 hypothetical protein compare
Xcc-8004.4403.1 -0.8 -2.0 Arsenate reductase (EC 1.20.4.1) compare
Xcc-8004.4373.1 -0.8 -2.6 LppC putative lipoprotein compare
Xcc-8004.5132.1 -0.8 -3.3 Heavy metal RND efflux outer membrane protein, CzcC family compare
Xcc-8004.726.1 -0.8 -0.9 Putative preQ0 transporter compare
Xcc-8004.323.1 -0.8 -1.0 FIG01210738: hypothetical protein compare
Xcc-8004.638.1 -0.7 -4.6 Bacterioferritin compare
Xcc-8004.2219.1 -0.7 -3.2 Magnesium and cobalt efflux protein CorC compare
Xcc-8004.1162.1 -0.7 -2.0 FIG01210644: hypothetical protein compare
Xcc-8004.4844.1 -0.7 -1.0 FIG01210764: hypothetical protein compare
Xcc-8004.315.1 -0.7 -1.5 FIG01211941: hypothetical protein compare
Xcc-8004.263.1 -0.7 -3.6 Distant homolog of E. coli HemX protein in Xanthomonadaceae compare
Xcc-8004.3325.1 -0.7 -2.8 3-hydroxyanthranilate 3,4-dioxygenase (EC 1.13.11.6) compare
Xcc-8004.4829.1 -0.7 -2.8 Transamidase GatB domain protein compare
Xcc-8004.2879.1 -0.7 -0.9 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.2009.1 -0.7 -3.8 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Xcc-8004.5168.1 -0.7 -0.9 hypothetical protein compare
Xcc-8004.1677.1 -0.7 -2.0 FIG01209993: hypothetical protein compare
Xcc-8004.1515.1 -0.7 -1.7 hypothetical protein compare
Xcc-8004.4501.1 -0.7 -2.3 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Xcc-8004.2935.1 -0.7 -5.2 Amino acid transporters compare
Xcc-8004.385.1 -0.7 -1.5 FIG01212287: hypothetical protein compare
Xcc-8004.1792.1 -0.7 -3.8 Transcription regulator of multidrug efflux pump operon, TetR (AcrR) family compare
Xcc-8004.683.1 -0.7 -2.2 hypothetical protein compare
Xcc-8004.574.1 -0.7 -3.7 Di-/tripeptide transporter compare
Xcc-8004.2672.1 -0.7 -1.3 hypothetical protein compare
Xcc-8004.3954.1 -0.7 -2.8 HflC protein compare
Xcc-8004.2214.1 -0.7 -1.8 Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) compare
Xcc-8004.3431.1 -0.7 -1.6 DNA repair protein RecN compare
Xcc-8004.4672.1 -0.7 -2.2 hypothetical protein compare
Xcc-8004.983.1 -0.7 -2.2 Glutathione-dependent formaldehyde-activating enzyme (EC 4.4.1.22) compare
Xcc-8004.4529.1 -0.7 -1.1 FIG01210979: hypothetical protein compare
Xcc-8004.3630.1 -0.7 -1.4 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Xcc-8004.1551.1 -0.7 -2.0 hypothetical protein compare
Xcc-8004.4375.1 -0.7 -2.2 Putative membrane-bound metal-dependent hydrolases compare
Xcc-8004.2309.1 -0.7 -2.3 FIG01214780: hypothetical protein compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in xantho_mme_glucose_dropout_lth experiments