Experiment set3IT074 for Burkholderia phytofirmans PsJN

Compare to:

Putrescine Dihydrochloride nitrogen source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS33835 -7.2 -5.0 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS13705 -7.1 -4.9 chorismate synthase compare
BPHYT_RS17675 -6.9 -2.5 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS09500 -6.9 -4.7 glucose-6-phosphate isomerase compare
BPHYT_RS33900 -6.8 -6.6 3-isopropylmalate dehydrogenase compare
BPHYT_RS17690 -6.8 -9.3 imidazole glycerol phosphate synthase compare
BPHYT_RS06555 -6.7 -6.5 ketol-acid reductoisomerase compare
BPHYT_RS17670 -6.6 -4.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS33915 -6.5 -7.7 isopropylmalate isomerase compare
BPHYT_RS15075 -6.4 -3.9 dihydrokaempferol 4-reductase compare
BPHYT_RS15710 -6.3 -3.7 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS33880 -6.2 -9.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS33865 -6.2 -6.0 tryptophan synthase alpha chain compare
BPHYT_RS17395 -6.2 -2.2 anthranilate synthase subunit II compare
BPHYT_RS03150 -6.2 -15.4 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS17885 -6.1 -7.3 3-dehydroquinate synthase compare
BPHYT_RS12940 -6.0 -6.2 signal transduction histidine kinase compare
BPHYT_RS16245 -6.0 -5.9 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS16735 -5.9 -7.0 phosphogluconate dehydratase compare
BPHYT_RS14910 -5.9 -12.6 chorismate mutase compare
BPHYT_RS17890 -5.9 -3.6 shikimate kinase compare
BPHYT_RS17855 -5.8 -14.1 glutamate synthase compare
BPHYT_RS17680 -5.8 -4.2 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS33875 -5.6 -6.8 tryptophan synthase subunit alpha compare
BPHYT_RS14190 -5.5 -6.6 carbamoyl phosphate synthase large subunit compare
BPHYT_RS12150 -5.5 -16.6 PII uridylyl-transferase compare
BPHYT_RS12985 -5.5 -3.7 amino acid acetyltransferase compare
BPHYT_RS04955 -5.5 -1.9 methionyl-tRNA synthetase compare
BPHYT_RS14915 -5.4 -7.3 phosphoserine aminotransferase compare
BPHYT_RS12935 -5.4 -6.5 chemotaxis protein CheY compare
BPHYT_RS04725 -5.3 -9.3 sulfite reductase compare
BPHYT_RS09515 -5.3 -3.6 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS02905 -5.3 -18.5 RNA polymerase subunit sigma-54 compare
BPHYT_RS15915 -5.2 -9.4 ornithine carbamoyltransferase compare
BPHYT_RS16835 -5.2 -6.4 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS16270 -5.2 -4.2 phosphoglycerate kinase compare
BPHYT_RS06545 -5.2 -10.5 acetolactate synthase compare
BPHYT_RS17685 -5.1 -6.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS04740 -5.1 -7.8 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS33840 -5.1 -9.4 amidophosphoribosyltransferase compare
BPHYT_RS08960 -5.1 -3.0 threonine synthase compare
BPHYT_RS18320 -5.1 -11.4 orotate phosphoribosyltransferase compare
BPHYT_RS03640 -5.0 -3.5 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS02610 -5.0 -3.6 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS17405 -5.0 -1.8 indole-3-glycerol phosphate synthase compare
BPHYT_RS08955 -5.0 -4.8 homoserine dehydrogenase compare
BPHYT_RS14895 -5.0 -4.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS14855 -5.0 -3.0 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS08030 -4.9 -4.9 transposase compare
BPHYT_RS14845 -4.9 -4.7 cysteine synthase compare
BPHYT_RS14195 -4.9 -3.4 carbamoyl phosphate synthase small subunit compare
BPHYT_RS17400 -4.9 -9.1 anthranilate phosphoribosyltransferase compare
BPHYT_RS01595 -4.8 -9.0 homoserine O-acetyltransferase compare
BPHYT_RS23155 -4.7 -1.7 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) compare
BPHYT_RS02590 -4.7 -9.9 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS08850 -4.6 -3.2 transcriptional regulator compare
BPHYT_RS16905 -4.6 -7.7 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS15920 -4.6 -11.2 argininosuccinate synthase compare
BPHYT_RS02570 -4.5 -6.4 phosphocarrier protein HPr compare
BPHYT_RS17390 -4.5 -14.5 anthranilate synthase subunit I compare
BPHYT_RS33645 -4.1 -6.4 homoserine kinase compare
BPHYT_RS04720 -4.1 -6.0 transcriptional regulator compare
BPHYT_RS03535 -4.1 -7.8 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS16675 -4.0 -3.9 dihydroorotase compare
BPHYT_RS04965 -4.0 -8.3 ATP-binding protein compare
BPHYT_RS03725 -3.9 -2.3 serine hydroxymethyltransferase compare
BPHYT_RS16840 -3.9 -3.7 transketolase compare
BPHYT_RS17715 -3.8 -6.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS06900 -3.8 -5.0 aspartate aminotransferase compare
BPHYT_RS05730 -3.8 -8.2 hypothetical protein compare
BPHYT_RS17700 -3.7 -4.4 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS23160 -3.7 -5.1 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) conserved
BPHYT_RS06610 -3.7 -2.2 triosephosphate isomerase compare
BPHYT_RS12845 -3.7 -13.6 ATPase compare
BPHYT_RS16255 -3.7 -4.4 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS06405 -3.6 -4.5 phosphoribosylamine--glycine ligase compare
BPHYT_RS01590 -3.6 -4.6 methionine biosynthesis protein MetW compare
BPHYT_RS12530 -3.6 -4.2 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS06045 -3.5 -8.4 transaldolase compare
BPHYT_RS10100 -3.4 -5.7 dihydroxy-acid dehydratase compare
BPHYT_RS23140 -3.3 -4.0 putrescine/spermidine ABC transporter permease compare
BPHYT_RS05010 -3.3 -4.1 RpiR family transcriptional regulator compare
BPHYT_RS06685 -3.2 -4.3 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS12465 -3.1 -4.0 inositol monophosphatase compare
BPHYT_RS19565 -3.1 -9.3 gamma-glutamyl:cysteine ligase compare
BPHYT_RS06175 -3.1 -4.4 LPS biosynthesis compare
BPHYT_RS26925 -3.0 -2.6 NIPSNAP family containing protein compare
BPHYT_RS04730 -3.0 -3.7 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS17520 -2.9 -6.4 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS03090 -2.9 -1.6 hypothetical protein compare
BPHYT_RS33920 -2.9 -8.3 type II citrate synthase compare
BPHYT_RS05020 -2.8 -6.4 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS29520 -2.7 -1.3 hypothetical protein compare
BPHYT_RS05960 -2.6 -4.4 endoribonuclease L-PSP compare
BPHYT_RS17100 -2.6 -7.7 RNA pyrophosphohydrolase compare
BPHYT_RS19570 -2.6 -12.3 sodium/hydrogen exchanger compare
BPHYT_RS14790 -2.5 -3.7 D-amino acid dehydrogenase compare
BPHYT_RS33905 -2.5 -1.4 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS01485 -2.4 -1.2 histidine kinase compare
BPHYT_RS03645 -2.4 -2.1 tRNA dimethylallyltransferase compare
BPHYT_RS36150 -2.4 -2.8 hypothetical protein compare
BPHYT_RS14785 -2.3 -9.5 AsnC family transcriptional regulator compare
BPHYT_RS05320 -2.2 -1.5 beta-lactamase compare
BPHYT_RS12840 -2.1 -3.6 pyruvate dehydrogenase compare
BPHYT_RS34665 -2.1 -2.9 hypothetical protein compare
BPHYT_RS23175 -2.1 -2.7 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase compare
BPHYT_RS30490 -2.1 -1.2 2-haloalkanoic acid dehalogenase compare
BPHYT_RS05905 -2.1 -1.7 hypothetical protein compare
BPHYT_RS18705 -2.0 -1.5 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS15650 -2.0 -10.4 quinolinate synthetase compare
BPHYT_RS36480 -2.0 -2.6 hypothetical protein compare
BPHYT_RS03625 -2.0 -7.4 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS15620 -2.0 -3.1 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS09650 -1.9 -1.8 hypothetical protein compare
BPHYT_RS13220 -1.9 -5.2 phosphomethylpyrimidine synthase compare
BPHYT_RS14900 -1.9 -2.5 prephenate dehydrogenase compare
BPHYT_RS25335 -1.8 -1.3 hypothetical protein compare
BPHYT_RS03570 -1.8 -7.3 heat-inducible transcription repressor HrcA compare
BPHYT_RS07145 -1.8 -1.6 DNA-binding protein compare
BPHYT_RS26355 -1.8 -1.4 hypothetical protein compare
BPHYT_RS03015 -1.8 -1.2 aldolase compare
BPHYT_RS13130 -1.8 -1.9 metallophosphatase compare
BPHYT_RS04745 -1.7 -3.5 sulfate adenylyltransferase compare
BPHYT_RS15470 -1.7 -6.9 tRNA (guanine-N(7)-)-methyltransferase compare
BPHYT_RS10470 -1.7 -3.0 hypothetical protein compare
BPHYT_RS07540 -1.7 -1.4 hypothetical protein compare
BPHYT_RS15645 -1.7 -5.2 nicotinate-nucleotide pyrophosphorylase compare
BPHYT_RS36275 -1.7 -2.6 hypothetical protein compare
BPHYT_RS03375 -1.7 -1.7 NAD(P) transhydrogenase compare
BPHYT_RS06410 -1.6 -3.0 transcriptional regulator compare
BPHYT_RS23230 -1.6 -1.8 histidine kinase compare
BPHYT_RS05030 -1.6 -3.0 sugar ABC transporter permease compare
BPHYT_RS17640 -1.6 -4.3 2-alkenal reductase compare
BPHYT_RS15640 -1.6 -8.9 L-aspartate oxidase compare
BPHYT_RS06530 -1.6 -1.0 membrane protein compare
BPHYT_RS08950 -1.6 -4.4 aminotransferase compare
BPHYT_RS17755 -1.6 -3.2 ABC transporter substrate-binding protein compare
BPHYT_RS28485 -1.5 -1.0 GntR family transcriptional regulator compare
BPHYT_RS08565 -1.5 -0.7 dihydroorotate dehydrogenase compare
BPHYT_RS29620 -1.5 -1.0 hypothetical protein compare
BPHYT_RS17380 -1.5 -5.5 ribulose-phosphate 3-epimerase compare
BPHYT_RS30990 -1.5 -1.7 dTDP-4-dehydrorhamnose 3,5-epimerase compare
BPHYT_RS11155 -1.5 -1.2 hypothetical protein compare
BPHYT_RS08150 -1.4 -1.1 membrane protein compare
BPHYT_RS15890 -1.4 -1.2 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
BPHYT_RS18765 -1.4 -6.4 flagellar biosynthesis protein FliS compare
BPHYT_RS02650 -1.4 -1.4 membrane protein compare
BPHYT_RS34780 -1.4 -4.1 phytoene synthase compare
BPHYT_RS11100 -1.4 -1.8 methyltransferase compare
BPHYT_RS17945 -1.4 -1.6 cytochrome C biogenesis protein compare
BPHYT_RS08340 -1.4 -0.4 chemotaxis protein CheY compare
BPHYT_RS29720 -1.4 -1.3 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
BPHYT_RS23940 -1.4 -1.5 GntR family transcriptional regulator compare
BPHYT_RS14400 -1.4 -2.9 anti-sigma factor compare
BPHYT_RS06550 -1.4 -2.6 acetolactate synthase compare
BPHYT_RS29185 -1.4 -1.6 sugar ABC transporter permease compare
BPHYT_RS17760 -1.4 -3.2 ABC transporter permease compare
BPHYT_RS12615 -1.3 -1.3 dihydrodipicolinate synthase compare
BPHYT_RS09565 -1.3 -1.7 acetyl-CoA acetyltransferase compare
BPHYT_RS06390 -1.3 -2.4 ribosome-associated protein IOJAP compare
BPHYT_RS04890 -1.3 -0.8 cobalamin biosynthesis protein CobD compare
BPHYT_RS04095 -1.3 -1.5 SAM-dependent methyltransferase PhcB compare
BPHYT_RS23255 -1.3 -2.3 TetR family transcriptional regulator compare
BPHYT_RS13200 -1.3 -1.5 molybdopterin binding oxidoreductase compare
BPHYT_RS35480 -1.3 -2.2 salicylyl-CoA 5-hydroxylase compare
BPHYT_RS33805 -1.3 -1.0 hypothetical protein compare
BPHYT_RS26955 -1.3 -1.0 succinylglutamate desuccinylase compare
BPHYT_RS26685 -1.3 -1.8 precorrin-8X methylmutase compare
BPHYT_RS10240 -1.3 -1.1 translation initiation inhibitor compare
BPHYT_RS03255 -1.3 -1.5 glutathione S-transferase compare
BPHYT_RS01455 -1.3 -0.9 peptide deformylase compare
BPHYT_RS20070 -1.3 -2.4 hypothetical protein compare
BPHYT_RS22215 -1.3 -2.0 hypothetical protein compare
BPHYT_RS05035 -1.3 -3.4 sugar ABC transporter permease compare
BPHYT_RS30825 -1.3 -1.1 extradiol dioxygenase compare
BPHYT_RS19905 -1.2 -2.0 membrane protein compare
BPHYT_RS02600 -1.2 -1.9 glutaredoxin compare
BPHYT_RS27395 -1.2 -1.4 N-acetyltransferase GCN5 compare
BPHYT_RS25875 -1.2 -1.3 type III secretion protein compare
BPHYT_RS14480 -1.2 -5.7 ribosomal large subunit pseudouridine synthase C compare
BPHYT_RS21025 -1.2 -1.2 cation-binding protein compare
BPHYT_RS20185 -1.2 -1.4 sugar transferase compare
BPHYT_RS29365 -1.2 -1.2 ATP-NAD kinase compare
BPHYT_RS29890 -1.2 -1.6 LysR family transcriptional regulator compare
BPHYT_RS15615 -1.2 -3.2 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS35750 -1.2 -0.9 hypothetical protein compare
BPHYT_RS30055 -1.2 -1.7 hypothetical protein compare
BPHYT_RS10065 -1.2 -1.4 cytochrome C oxidase subunit I compare
BPHYT_RS23460 -1.2 -0.8 AraC family transcriptional regulator compare
BPHYT_RS03755 -1.2 -2.6 pilus assembly protein PilE compare
BPHYT_RS13645 -1.2 -8.4 threonine--tRNA ligase compare
BPHYT_RS05650 -1.2 -1.1 hypothetical protein compare
BPHYT_RS03495 -1.2 -3.7 hypothetical protein compare
BPHYT_RS20515 -1.2 -1.9 alpha/beta hydrolase compare
BPHYT_RS06065 -1.2 -5.5 cytochrome C compare
BPHYT_RS32815 -1.2 -2.0 sugar ABC transporter compare
BPHYT_RS06105 -1.1 -1.6 hypothetical protein compare
BPHYT_RS05025 -1.1 -1.6 sugar ABC transporter substrate-binding protein compare
BPHYT_RS02150 -1.1 -2.4 biotin synthase compare
BPHYT_RS09095 -1.1 -2.6 NADPH:quinone oxidoreductase compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source Putrescine Dihydrochloride in Burkholderia phytofirmans PsJN

For nitrogen source Putrescine Dihydrochloride across organisms