Experiment set3IT074 for Burkholderia phytofirmans PsJN

Compare to:

Putrescine Dihydrochloride nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS27570 +1.8 4.0 universal stress protein UspA compare
BPHYT_RS26775 +1.6 1.5 chemotaxis protein CheB compare
BPHYT_RS20095 +1.6 1.7 transcriptional regulator compare
BPHYT_RS33030 +1.6 1.5 hypothetical protein compare
BPHYT_RS30365 +1.5 1.7 beta-lactamase compare
BPHYT_RS22400 +1.4 2.2 hypothetical protein compare
BPHYT_RS12590 +1.3 3.5 dual-specificity RNA methyltransferase RlmN compare
BPHYT_RS13885 +1.3 2.3 myo-inositol 2-dehydrogenase compare
BPHYT_RS25590 +1.3 3.3 FAD-dependent pyridine nucleotide-disulfide oxidoreductase compare
BPHYT_RS22860 +1.3 1.7 chemotaxis protein CheY compare
BPHYT_RS07870 +1.3 2.4 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
BPHYT_RS10395 +1.2 1.8 sulfonate ABC transporter compare
BPHYT_RS26965 +1.2 1.4 L-lactate dehydrogenase, LldG subunit (from data) compare
BPHYT_RS14250 +1.2 6.1 glycosyl transferase compare
BPHYT_RS26550 +1.2 1.1 Fis family transcriptional regulator compare
BPHYT_RS14255 +1.2 8.7 ABC transporter compare
BPHYT_RS26560 +1.2 1.7 murein hydrolase transporter LrgA compare
BPHYT_RS26300 +1.2 1.6 ATP-dependent DNA ligase compare
BPHYT_RS05895 +1.2 1.0 hypothetical protein compare
BPHYT_RS23445 +1.2 2.2 hexuronate transporter compare
BPHYT_RS20725 +1.2 1.6 histidine kinase compare
BPHYT_RS10945 +1.2 2.5 2-deoxy-D-gluconate 3-dehydrogenase compare
BPHYT_RS23880 +1.2 1.7 sugar ABC transporter permease compare
BPHYT_RS12785 +1.2 3.4 Rrf2 family transcriptional regulator compare
BPHYT_RS01795 +1.1 6.0 histidine kinase compare
BPHYT_RS35120 +1.1 2.3 hypothetical protein compare
BPHYT_RS01790 +1.1 6.5 LuxR family transcriptional regulator compare
BPHYT_RS20845 +1.1 1.3 peroxidase compare
BPHYT_RS06195 +1.1 2.7 membrane protein compare
BPHYT_RS30590 +1.1 2.2 transcriptional regulator compare
BPHYT_RS07570 +1.1 1.3 hypothetical protein compare
BPHYT_RS33590 +1.1 7.1 Rieske (2Fe-2S) protein compare
BPHYT_RS23090 +1.1 1.7 histidine kinase compare
BPHYT_RS33990 +1.1 1.2 ATPase compare
BPHYT_RS28240 +1.1 2.5 L-rhamnonate dehydratase compare
BPHYT_RS13835 +1.1 1.3 S-adenosylhomocysteine nucleosidase compare
BPHYT_RS19025 +1.1 4.4 transcriptional regulator compare
BPHYT_RS20665 +1.1 1.5 LysR family transcriptional regulator compare
BPHYT_RS07385 +1.1 3.2 glycosyl transferase family 1 compare
BPHYT_RS05355 +1.1 2.7 Crp/Fnr family transcriptional regulator compare
BPHYT_RS18935 +1.0 5.9 flagellar biosynthesis regulator FlhF compare
BPHYT_RS21870 +1.0 2.2 hypothetical protein compare
BPHYT_RS02725 +1.0 1.7 GntR family transcriptional regulator compare
BPHYT_RS36400 +1.0 1.1 hypothetical protein compare
BPHYT_RS28065 +1.0 1.2 hypothetical protein compare
BPHYT_RS25000 +1.0 3.0 MFS transporter compare
BPHYT_RS29920 +1.0 1.1 hypothetical protein compare
BPHYT_RS09585 +1.0 1.2 hypothetical protein compare
BPHYT_RS18785 +1.0 2.0 flagellar assembly protein FliH compare
BPHYT_RS18895 +1.0 3.8 flagellar basal body rod protein FlgB compare
BPHYT_RS36230 +1.0 2.1 hypothetical protein compare
BPHYT_RS22325 +1.0 1.8 histidine kinase compare
BPHYT_RS10305 +1.0 1.5 hypothetical protein compare
BPHYT_RS30775 +0.9 2.0 gluconate 2-dehydrogenase compare
BPHYT_RS03945 +0.9 2.2 hypothetical protein compare
BPHYT_RS33135 +0.9 1.4 LysR family transcriptional regulator compare
BPHYT_RS18830 +0.9 6.4 flagellar biosynthesis protein FliQ compare
BPHYT_RS18945 +0.9 5.9 flagellar biosynthesis protein FlhB compare
BPHYT_RS09755 +0.9 1.3 glycosyl transferase family 1 compare
BPHYT_RS02475 +0.9 3.0 membrane protein compare
BPHYT_RS26290 +0.9 2.3 photosystem reaction center subunit H compare
BPHYT_RS13470 +0.9 1.0 arylsulfate sulfotransferase compare
BPHYT_RS11555 +0.9 1.9 allantoinase compare
BPHYT_RS11540 +0.9 1.6 ureidoglycolate hydrolase compare
BPHYT_RS32415 +0.9 2.5 translation elongation factor compare
BPHYT_RS28535 +0.9 0.9 response regulator receiver compare
BPHYT_RS05565 +0.9 1.0 membrane protein compare
BPHYT_RS28910 +0.9 1.1 diguanylate phosphodiesterase compare
BPHYT_RS05410 +0.9 3.0 beta-lactamase compare
BPHYT_RS18645 +0.9 3.4 membrane protein compare
BPHYT_RS33380 +0.9 2.4 2-nitropropane dioxygenase compare
BPHYT_RS10215 +0.9 1.3 sulfate transporter compare
BPHYT_RS14460 +0.9 4.3 S-adenosylmethionine-dependent methyltransferase compare
BPHYT_RS09620 +0.9 2.3 aminodeoxychorismate lyase compare
BPHYT_RS20900 +0.8 2.1 phytanoyl-CoA dioxygenase compare
BPHYT_RS11810 +0.8 1.4 LysR family transcriptional regulator compare
BPHYT_RS08745 +0.8 2.7 hypothetical protein compare
BPHYT_RS33825 +0.8 3.1 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS08975 +0.8 3.2 molybdenum cofactor biosynthesis protein MoaE compare
BPHYT_RS35400 +0.8 1.6 ABC transporter compare
BPHYT_RS17490 +0.8 1.1 haloacid dehalogenase compare
BPHYT_RS08170 +0.8 1.6 pilus assembly protein CpaB compare
BPHYT_RS27560 +0.8 1.3 histidine kinase compare
BPHYT_RS34450 +0.8 2.7 LysR family transcriptional regulator compare
BPHYT_RS03635 +0.8 2.3 ABC transporter permease compare
BPHYT_RS28000 +0.8 1.0 permease compare
BPHYT_RS35955 +0.8 1.0 hypothetical protein compare
BPHYT_RS34080 +0.8 2.7 flagellar motor protein MotB compare
BPHYT_RS23395 +0.8 1.1 glycosyl transferase compare
BPHYT_RS31260 +0.8 1.3 histidine kinase compare
BPHYT_RS16250 +0.8 0.9 N5-carboxyaminoimidazole ribonucleotide mutase compare
BPHYT_RS07255 +0.8 1.1 4-oxalocrotonate decarboxylase compare
BPHYT_RS18885 +0.8 4.8 flagellar basal body rod modification protein FlgD compare
BPHYT_RS07060 +0.8 1.5 aldo/keto reductase compare
BPHYT_RS10720 +0.8 1.3 hypothetical protein compare
BPHYT_RS29320 +0.8 1.5 histidine kinase compare
BPHYT_RS12535 +0.8 0.9 membrane protein compare
BPHYT_RS11050 +0.8 1.2 molecular chaperone compare
BPHYT_RS09480 +0.8 1.1 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS20935 +0.8 1.8 dehydrogenase compare
BPHYT_RS03900 +0.8 0.9 phospholipid-binding protein compare
BPHYT_RS27445 +0.8 1.1 hypothetical protein compare
BPHYT_RS31255 +0.8 1.1 cytochrome B561 compare
BPHYT_RS04910 +0.8 1.1 phenylacetic acid degradation protein compare
BPHYT_RS00725 +0.8 0.8 hypothetical protein compare
BPHYT_RS28480 +0.8 1.5 hydroxyglutarate oxidase compare
BPHYT_RS26265 +0.7 2.1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase compare
BPHYT_RS22500 +0.7 2.0 transcriptional regulator compare
BPHYT_RS16335 +0.7 0.6 membrane protein compare
BPHYT_RS22780 +0.7 2.8 sugar ABC transporter permease compare
BPHYT_RS16055 +0.7 3.4 sugar ABC transporter permease compare
BPHYT_RS23830 +0.7 1.6 acetyl-CoA hydrolase compare
BPHYT_RS29035 +0.7 1.4 arsenic transporter compare
BPHYT_RS13245 +0.7 2.2 hypothetical protein compare
BPHYT_RS18810 +0.7 4.2 flagellar motor switch protein FliM compare
BPHYT_RS05285 +0.7 1.2 hypothetical protein compare
BPHYT_RS36540 +0.7 0.9 hypothetical protein compare
BPHYT_RS34245 +0.7 2.7 ABC transporter for L-rhamnose/L-fucose/xylitol, ATPase component (from data) compare
BPHYT_RS08405 +0.7 0.9 hypothetical protein compare
BPHYT_RS23515 +0.7 1.3 porin compare
BPHYT_RS27720 +0.7 0.8 hypothetical protein compare
BPHYT_RS10765 +0.7 1.9 amidase compare
BPHYT_RS21855 +0.7 2.1 hypothetical protein compare
BPHYT_RS35225 +0.7 2.3 RNA polymerase subunit sigma-24 compare
BPHYT_RS16880 +0.7 1.3 malic enzyme compare
BPHYT_RS02130 +0.7 1.5 hydroxymethylglutaryl-CoA lyase compare
BPHYT_RS02710 +0.7 0.9 hypothetical protein compare
BPHYT_RS25770 +0.7 1.0 hypothetical protein compare
BPHYT_RS23370 +0.7 1.2 glycosyl transferase family 1 compare
BPHYT_RS18880 +0.7 4.7 flagellar hook protein FlgE compare
BPHYT_RS23705 +0.7 4.0 hypothetical protein compare
BPHYT_RS15575 +0.7 3.2 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
BPHYT_RS32150 +0.7 0.9 hypothetical protein compare
BPHYT_RS24500 +0.7 1.2 histidine kinase compare
BPHYT_RS26975 +0.7 0.7 L-lactate dehydrogenase, LldE subunit (from data) compare
BPHYT_RS18790 +0.7 3.7 ATP synthase compare
BPHYT_RS26375 +0.7 2.2 ATPase AAA compare
BPHYT_RS34300 +0.7 1.5 major facilitator transporter compare
BPHYT_RS09235 +0.7 1.9 hypothetical protein compare
BPHYT_RS18775 +0.7 3.9 flagellar M-ring protein FliF compare
BPHYT_RS05840 +0.7 2.7 hypothetical protein compare
BPHYT_RS16025 +0.7 2.2 Kynurenine formamidase, bacterial (EC 3.5.1.9) (from data) compare
BPHYT_RS25625 +0.7 2.1 glutathione S-transferase compare
BPHYT_RS08905 +0.7 1.6 peroxiredoxin compare
BPHYT_RS18900 +0.7 5.4 flagella basal body P-ring formation protein FlgA compare
BPHYT_RS19435 +0.7 1.7 16S rRNA methyltransferase compare
BPHYT_RS29800 +0.7 1.1 hypothetical protein compare
BPHYT_RS18940 +0.7 3.9 flagellar biosynthesis protein FlhA compare
BPHYT_RS07910 +0.7 2.4 ammonium transporter compare
BPHYT_RS08410 +0.7 0.7 dehydrogenase compare
BPHYT_RS13105 +0.7 1.2 LacI family transcription regulator compare
BPHYT_RS26525 +0.6 1.0 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS25030 +0.6 1.9 gluconate 2-dehydrogenase compare
BPHYT_RS15485 +0.6 1.1 proteinase inhibitor compare
BPHYT_RS28200 +0.6 1.9 sugar ABC transporter substrate-binding protein compare
BPHYT_RS08000 +0.6 1.1 antibiotic biosynthesis monooxygenase compare
BPHYT_RS07380 +0.6 1.7 membrane protein compare
BPHYT_RS02480 +0.6 1.1 alkaline phosphatase compare
BPHYT_RS01625 +0.6 2.8 chemotaxis protein CheY compare
BPHYT_RS28350 +0.6 1.1 fatty acid desaturase compare
BPHYT_RS36145 +0.6 1.1 hypothetical protein compare
BPHYT_RS06730 +0.6 1.5 MaoC family dehydratase compare
BPHYT_RS01565 +0.6 1.2 polyphosphate kinase compare
BPHYT_RS31890 +0.6 1.1 transposase compare
BPHYT_RS26465 +0.6 0.7 metallophosphoesterase compare
BPHYT_RS08395 +0.6 0.8 DSBA oxidoreductase compare
BPHYT_RS21955 +0.6 2.3 acetyl-CoA acetyltransferase compare
BPHYT_RS15735 +0.6 2.6 pseudouridine synthase compare
BPHYT_RS34995 +0.6 1.4 MFS transporter compare
BPHYT_RS03330 +0.6 1.6 hypothetical protein compare
BPHYT_RS01100 +0.6 2.5 protein mobD compare
BPHYT_RS21370 +0.6 2.1 glyoxalase compare
BPHYT_RS06710 +0.6 0.8 hypothetical protein compare
BPHYT_RS28605 +0.6 1.4 NADPH-dependent FMN reductase compare
BPHYT_RS04400 +0.6 1.2 Crp/Fnr family transcriptional regulator compare
BPHYT_RS20520 +0.6 1.0 transcriptional regulator compare
BPHYT_RS07175 +0.6 1.3 peptidase C69 compare
BPHYT_RS22295 +0.6 0.7 LysR family transcriptional regulator compare
BPHYT_RS07705 +0.6 0.9 arginine succinyltransferase compare
BPHYT_RS35005 +0.6 1.8 molecular chaperone DnaJ compare
BPHYT_RS24285 +0.6 1.0 TetR family transcriptional regulator compare
BPHYT_RS32830 +0.6 1.3 AraC family transcriptional regulator compare
BPHYT_RS05925 +0.6 2.1 ABC transporter ATP-binding protein compare
BPHYT_RS03930 +0.6 2.2 3-hydroxy-3-methylglutaryl-CoA lyase compare
BPHYT_RS18875 +0.6 3.8 flagellar basal body rod protein FlgF compare
BPHYT_RS23520 +0.6 1.1 peroxidase compare
BPHYT_RS02435 +0.6 1.0 hypothetical protein compare
BPHYT_RS27250 +0.6 0.8 NAD-dependent epimerase/dehydratase compare
BPHYT_RS28520 +0.6 1.8 hypothetical protein compare
BPHYT_RS20355 +0.6 1.5 ABC transporter substrate-binding protein compare
BPHYT_RS06335 +0.6 0.8 CopG family transcriptional regulator compare
BPHYT_RS23270 +0.6 0.8 enoyl-CoA hydratase compare
BPHYT_RS18800 +0.6 2.1 flagellar hook-length control protein compare
BPHYT_RS08505 +0.6 2.1 hypothetical protein compare
BPHYT_RS18825 +0.6 2.5 flagellar biosynthesis protein FliP compare
BPHYT_RS35880 +0.6 2.2 response regulator receiver protein compare
BPHYT_RS30135 +0.6 2.7 SAM-dependent methyltransferase compare
BPHYT_RS23975 +0.6 1.4 peroxidase compare
BPHYT_RS26390 +0.6 0.6 antibiotic resistance protein compare
BPHYT_RS04885 +0.6 0.7 threonine-phosphate decarboxylase compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source Putrescine Dihydrochloride in Burkholderia phytofirmans PsJN

For nitrogen source Putrescine Dihydrochloride across organisms