Experiment set3IT073 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Xantho_MME_glucose_casamino

200 most important genes:

  gene name fitness t score description  
Xcc-8004.5192.1 -5.1 -12.6 hypothetical protein compare
Xcc-8004.2011.1 -4.7 -3.2 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.271.1 -4.6 -3.2 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.5193.1 -4.4 -22.6 Outer membrane protein assembly factor YaeT precursor compare
Xcc-8004.4481.1 -4.2 -7.9 hypothetical protein compare
Xcc-8004.601.1 -3.4 -9.7 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.657.1 -3.1 -9.9 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
Xcc-8004.2086.1 -3.1 -2.9 Xanthan biosynthesis glycosyltransferase GumH compare
Xcc-8004.2012.1 -3.1 -8.1 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.659.1 -3.0 -3.4 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.1676.1 -3.0 -10.2 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
Xcc-8004.4439.1 -2.7 -12.9 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
Xcc-8004.4948.1 -2.6 -4.1 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Xcc-8004.4073.1 -2.6 -11.5 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
Xcc-8004.2922.1 -2.4 -2.8 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.130.1 -2.1 -8.5 hypothetical protein compare
Xcc-8004.2449.1 -1.9 -4.7 Glucokinase (EC 2.7.1.2) compare
Xcc-8004.1196.1 -1.9 -7.0 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Xcc-8004.1615.1 -1.9 -2.0 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.1372.1 -1.8 -4.8 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.4364.1 -1.8 -6.3 Cell division protein MraZ compare
Xcc-8004.3321.1 -1.7 -2.4 FIG01209847: hypothetical protein compare
Xcc-8004.2450.1 -1.7 -10.7 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Xcc-8004.2406.1 -1.7 -8.4 Manganese transport protein MntH compare
Xcc-8004.3324.1 -1.7 -4.0 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.3130.1 -1.7 -5.7 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Xcc-8004.505.1 -1.6 -8.1 Biotin synthase (EC 2.8.1.6) compare
Xcc-8004.846.1 -1.6 -3.5 Protein of unknown function DUF484 compare
Xcc-8004.4539.1 -1.5 -7.2 Oligopeptidase A (EC 3.4.24.70) compare
Xcc-8004.4752.1 -1.5 -2.7 DNA topoisomerase I (EC 5.99.1.2) compare
Xcc-8004.4398.1 -1.5 -5.5 Serine hydroxymethyltransferase (EC 2.1.2.1) compare
Xcc-8004.4112.1 -1.5 -3.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.623.1 -1.5 -2.7 Phosphoserine phosphatase compare
Xcc-8004.1086.1 -1.5 -2.1 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2401.1 -1.5 -1.0 FIG00545367: hypothetical protein compare
Xcc-8004.2217.1 -1.5 -3.6 FIG01209779: hypothetical protein compare
Xcc-8004.2259.1 -1.4 -4.6 PhbF compare
Xcc-8004.4699.1 -1.4 -1.2 Flagellar motor protein compare
Xcc-8004.270.1 -1.4 -5.4 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.3346.1 -1.3 -3.1 hypothetical protein compare
Xcc-8004.2879.1 -1.3 -1.4 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.914.1 -1.2 -4.9 tail-specific protease compare
Xcc-8004.4824.1 -1.2 -8.1 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.5343.1 -1.2 -6.2 hypothetical protein compare
Xcc-8004.3442.1 -1.2 -2.3 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2266.1 -1.2 -2.1 FIG01211351: hypothetical protein compare
Xcc-8004.2207.1 -1.2 -6.2 Membrane fusion component of tripartite multidrug resistance system compare
Xcc-8004.3322.1 -1.2 -1.2 FIG01211446: hypothetical protein compare
Xcc-8004.2910.1 -1.2 -3.9 Regulatory protein, RpfE type compare
Xcc-8004.4732.1 -1.2 -1.4 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Xcc-8004.3087.1 -1.2 -3.8 FIG01211583: hypothetical protein compare
Xcc-8004.1696.1 -1.2 -1.1 N-acetylglutamate synthase (EC 2.3.1.1) compare
Xcc-8004.1007.1 -1.1 -2.1 acetylxylan esterase compare
Xcc-8004.99.1 -1.1 -1.8 FIG01211055: hypothetical protein compare
Xcc-8004.4836.1 -1.1 -4.5 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
Xcc-8004.3595.1 -1.1 -1.6 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Xcc-8004.4210.1 -1.1 -5.2 Thymidine phosphorylase (EC 2.4.2.4) compare
Xcc-8004.2660.1 -1.1 -2.7 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.463.1 -1.0 -2.2 2,3-dihydroxy-2,3-dihydro-phenylpropionate dehydrogenase (EC 1.3.1.-) compare
Xcc-8004.703.1 -1.0 -2.0 hypothetical protein compare
Xcc-8004.2019.1 -1.0 -5.9 Decarboxylase family protein compare
Xcc-8004.4000.1 -1.0 -2.6 COG1399 protein, clustered with ribosomal protein L32p compare
Xcc-8004.1511.1 -1.0 -2.4 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.340.1 -1.0 -2.7 Organic hydroperoxide resistance protein compare
Xcc-8004.1334.1 -1.0 -1.5 hypothetical protein compare
Xcc-8004.3816.1 -1.0 -4.7 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Xcc-8004.94.1 -0.9 -2.3 Transcriptional regulator, LuxR family compare
Xcc-8004.1962.1 -0.9 -1.9 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Xcc-8004.3253.1 -0.9 -2.7 IncQ plasmid conjugative transfer protein TraG compare
Xcc-8004.1113.1 -0.9 -2.4 hypothetical protein compare
Xcc-8004.5252.1 -0.9 -4.6 FIG01210658: hypothetical protein compare
Xcc-8004.3642.1 -0.9 -1.3 FIG01211227: hypothetical protein compare
Xcc-8004.2497.1 -0.9 -0.9 Mobile element protein compare
Xcc-8004.2618.1 -0.9 -2.2 Ferric siderophore transport system, periplasmic binding protein TonB compare
Xcc-8004.234.1 -0.9 -6.5 cardiolipin synthase compare
Xcc-8004.3108.1 -0.9 -2.0 Regulatory protein RecX compare
Xcc-8004.3955.1 -0.9 -3.7 HflK protein compare
Xcc-8004.2208.1 -0.9 -5.9 Inner membrane component of tripartite multidrug resistance system compare
Xcc-8004.4013.1 -0.9 -2.1 FIG000557: hypothetical protein co-occurring with RecR compare
Xcc-8004.2958.1 -0.9 -1.9 tryptophan-rich sensory protein compare
Xcc-8004.5368.1 -0.9 -2.7 FIG01210868: hypothetical protein compare
Xcc-8004.3979.1 -0.9 -4.7 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.2563.1 -0.9 -1.7 FIG01210540: hypothetical protein compare
Xcc-8004.1832.1 -0.9 -2.2 FIG01210449: hypothetical protein compare
Xcc-8004.2081.1 -0.9 -2.4 Xanthan biosynthesis chain length determinant protein GumC compare
Xcc-8004.3576.1 -0.9 -4.4 Intracellular PHB depolymerase (EC 3.1.1.-) compare
Xcc-8004.1673.1 -0.8 -2.7 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Xcc-8004.3976.1 -0.8 -2.8 2-methylaconitate cis-trans isomerase compare
Xcc-8004.2343.1 -0.8 -1.6 Cytochrome c-type biogenesis protein CcmE, heme chaperone compare
Xcc-8004.1747.1 -0.8 -2.1 FIG01210249: hypothetical protein compare
Xcc-8004.4480.1 -0.8 -5.6 Phosphomannomutase (EC 5.4.2.8) compare
Xcc-8004.4322.1 -0.8 -1.4 nucleoprotein/polynucleotide-associated enzyme compare
Xcc-8004.1336.1 -0.8 -3.8 two-component system sensor protein compare
Xcc-8004.4884.1 -0.8 -1.9 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
Xcc-8004.4829.1 -0.8 -3.4 Transamidase GatB domain protein compare
Xcc-8004.3395.1 -0.8 -1.5 Transcriptional regulator, GntR family compare
Xcc-8004.4675.1 -0.8 -1.6 FIG01211280: hypothetical protein compare
Xcc-8004.3537.1 -0.8 -3.5 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) compare
Xcc-8004.5230.1 -0.8 -3.8 Gluconolactonase (EC 3.1.1.17) compare
Xcc-8004.4065.1 -0.8 -3.7 Exopolyphosphatase (EC 3.6.1.11) compare
Xcc-8004.5039.1 -0.8 -3.2 FIG032621: Hydrolase, alpha/beta hydrolase fold family compare
Xcc-8004.1359.1 -0.8 -3.1 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.3703.1 -0.8 -1.6 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3230.1 -0.7 -1.5 Phage DNA invertase compare
Xcc-8004.3954.1 -0.7 -2.9 HflC protein compare
Xcc-8004.1725.1 -0.7 -2.9 Phenazine biosynthesis protein PhzF like compare
Xcc-8004.3365.1 -0.7 -2.5 FIG01209831: hypothetical protein compare
Xcc-8004.5203.1 -0.7 -1.6 Twin-arginine translocation protein TatB compare
Xcc-8004.4432.1 -0.7 -3.6 General secretion pathway protein E compare
Xcc-8004.3433.1 -0.7 -3.8 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Xcc-8004.4374.1 -0.7 -1.4 Predicted endonuclease distantly related to archaeal Holliday junction resolvase compare
Xcc-8004.2920.1 -0.7 -3.5 Ferrous iron transport protein B compare
Xcc-8004.2318.1 -0.7 -3.1 Argininosuccinate synthase (EC 6.3.4.5) compare
Xcc-8004.1027.1 -0.7 -1.4 Two-component system sensor protein compare
Xcc-8004.2357.1 -0.7 -1.8 Segregation and condensation protein B compare
Xcc-8004.3931.1 -0.7 -2.5 FIG01211120: hypothetical protein compare
Xcc-8004.2931.1 -0.7 -2.4 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Xcc-8004.3471.1 -0.7 -1.5 FIG01211539: hypothetical protein compare
Xcc-8004.790.1 -0.7 -2.0 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2579.1 -0.7 -1.0 Transcriptional regulator in PFGI-1-like cluster compare
Xcc-8004.2447.1 -0.7 -4.7 Phosphogluconate dehydratase (EC 4.2.1.12) compare
Xcc-8004.1495.1 -0.7 -1.7 FIG01212489: hypothetical protein compare
Xcc-8004.850.1 -0.7 -3.2 ATP-dependent protease HslV (EC 3.4.25.-) compare
Xcc-8004.2337.1 -0.7 -2.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.290.1 -0.7 -3.0 NAD(P)H steroid dehydrogenase-like protein in alkane synthesis cluster compare
Xcc-8004.3092.1 -0.7 -2.2 FIG01213027: hypothetical protein compare
Xcc-8004.3861.1 -0.7 -2.9 FIG01210504: hypothetical protein compare
Xcc-8004.2698.1 -0.7 -2.8 Protein yciE compare
Xcc-8004.3549.1 -0.7 -2.5 FIG01211514: hypothetical protein compare
Xcc-8004.3652.1 -0.7 -1.8 FIG01211136: hypothetical protein compare
Xcc-8004.4796.1 -0.7 -2.0 PhnB protein compare
Xcc-8004.1488.1 -0.6 -1.9 Coenzyme PQQ synthesis protein B compare
Xcc-8004.456.1 -0.6 -0.8 carbonic anhydrase, family 3 compare
Xcc-8004.2867.1 -0.6 -0.9 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.1436.1 -0.6 -1.0 Holliday junction DNA helicase RuvA compare
Xcc-8004.4302.1 -0.6 -3.4 Ribokinase (EC 2.7.1.15) compare
Xcc-8004.4833.1 -0.6 -1.8 FIG01111678: hypothetical protein compare
Xcc-8004.3120.1 -0.6 -1.2 RNA-binding protein Hfq compare
Xcc-8004.2949.1 -0.6 -1.6 ATP phosphoribosyltransferase (EC 2.4.2.17) compare
Xcc-8004.2032.1 -0.6 -2.8 hypothetical protein compare
Xcc-8004.5139.1 -0.6 -2.7 Gfa-like protein compare
Xcc-8004.4046.1 -0.6 -3.8 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.488.1 -0.6 -4.1 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
Xcc-8004.3208.1 -0.6 -1.1 Methyltransferase type 12 compare
Xcc-8004.726.1 -0.6 -0.9 Putative preQ0 transporter compare
Xcc-8004.2079.1 -0.6 -1.8 Outer membrane protein GumB, involved in the export of xanthan compare
Xcc-8004.205.1 -0.6 -4.8 Ribose operon repressor compare
Xcc-8004.609.1 -0.6 -1.1 hypothetical protein compare
Xcc-8004.5352.1 -0.6 -0.9 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Xcc-8004.2673.1 -0.6 -1.7 FIG01211365: hypothetical protein compare
Xcc-8004.2310.1 -0.6 -2.3 hypothetical protein compare
Xcc-8004.3131.1 -0.6 -1.8 hypothetical protein compare
Xcc-8004.1504.1 -0.6 -1.3 type IV pili signal transduction protein PilI compare
Xcc-8004.4501.1 -0.6 -2.3 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Xcc-8004.4035.1 -0.6 -2.5 FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-) compare
Xcc-8004.4844.1 -0.6 -0.9 FIG01210764: hypothetical protein compare
Xcc-8004.391.1 -0.6 -2.9 NAD-dependent protein deacetylase of SIR2 family compare
Xcc-8004.3832.1 -0.6 -1.5 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Xcc-8004.299.1 -0.6 -1.6 Acyltransferase compare
Xcc-8004.1314.1 -0.6 -2.5 FIG01209751: hypothetical protein compare
Xcc-8004.4830.1 -0.6 -1.9 hypothetical protein compare
Xcc-8004.2219.1 -0.6 -2.4 Magnesium and cobalt efflux protein CorC compare
Xcc-8004.5363.1 -0.6 -1.7 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Xcc-8004.854.1 -0.6 -0.9 Cytosine deaminase (EC 3.5.4.1) compare
Xcc-8004.3665.1 -0.6 -1.3 COG3380: Amine oxidase, flavin-containing compare
Xcc-8004.977.1 -0.6 -2.2 hypothetical protein compare
Xcc-8004.574.1 -0.6 -3.1 Di-/tripeptide transporter compare
Xcc-8004.1008.1 -0.6 -2.9 FIG01211317: hypothetical protein compare
Xcc-8004.5214.1 -0.6 -3.1 sal operon transcriptional repressor compare
Xcc-8004.2923.1 -0.6 -3.2 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Xcc-8004.494.1 -0.6 -3.1 Threonine dehydratase, catabolic (EC 4.3.1.19) compare
Xcc-8004.3815.1 -0.6 -1.2 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Xcc-8004.2565.1 -0.6 -1.8 hypothetical protein compare
Xcc-8004.3171.1 -0.6 -2.1 FIG01213081: hypothetical protein compare
Xcc-8004.4493.1 -0.6 -1.7 sugar translocase compare
Xcc-8004.4366.1 -0.6 -3.0 COG3332 compare
Xcc-8004.3817.1 -0.6 -2.5 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Xcc-8004.2419.1 -0.6 -2.5 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Xcc-8004.3590.1 -0.6 -1.0 FIG01211013: hypothetical protein compare
Xcc-8004.1135.1 -0.6 -1.1 FIG01210448: hypothetical protein compare
Xcc-8004.2928.1 -0.5 -1.9 FIG01210777: hypothetical protein compare
Xcc-8004.3787.1 -0.5 -1.8 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Xcc-8004.898.1 -0.5 -1.1 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.502.1 -0.5 -1.3 Biotin synthesis protein BioH compare
Xcc-8004.3013.1 -0.5 -1.1 hypothetical protein compare
Xcc-8004.3798.1 -0.5 -1.5 Anti-sigma B factor RsbT compare
Xcc-8004.2653.1 -0.5 -1.9 hypothetical protein compare
Xcc-8004.358.1 -0.5 -1.6 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17) compare
Xcc-8004.5071.1 -0.5 -2.5 FIG01210955: hypothetical protein compare
Xcc-8004.1137.1 -0.5 -0.9 FIG006231: RNA-binding protein compare
Xcc-8004.5326.1 -0.5 -1.0 Mobile element protein compare
Xcc-8004.2209.1 -0.5 -2.8 Outer membrane component of tripartite multidrug resistance system compare
Xcc-8004.3394.1 -0.5 -1.1 hypothetical protein compare
Xcc-8004.2861.1 -0.5 -0.7 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Xcc-8004.2638.1 -0.5 -1.7 Zona occludens toxin compare
Xcc-8004.3129.1 -0.5 -1.8 FIG139438: lipoprotein B compare
Xcc-8004.689.1 -0.5 -0.9 ATP-dependent DNA helicase recG (EC 3.6.1.-) compare
Xcc-8004.4672.1 -0.5 -1.6 hypothetical protein compare
Xcc-8004.1559.1 -0.5 -2.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Xcc-8004.3473.1 -0.5 -1.1 FIG01213437: hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment