Experiment set3IT073 for Methanococcus maripaludis JJ

Compare to:

H2 N-free with 2g/L casamino acids

200 most important genes:

  gene name fitness t score description  
MMJJ_RS00580 -5.9 -2.5 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS04485 -5.9 -10.5 riboflavin synthase compare
MMJJ_RS03055 -5.8 -3.3 hypothetical protein compare
MMJJ_RS05450 -5.6 -18.9 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMJJ_RS06625 -4.9 -2.5 pyruvate synthase subunit PorB compare
MMJJ_RS03580 -4.8 -3.3 TIGR00303 family protein compare
MMJJ_RS00210 -4.8 -2.7 DUF530 family protein compare
MMJJ_RS00600 -4.8 -3.9 hydroxymethylbilane synthase compare
MMJJ_RS07720 -4.7 -2.3 UPF0058 family protein compare
MMJJ_RS03615 -4.6 -4.1 cobalt-precorrin-8 methylmutase compare
MMJJ_RS02090 -4.5 -6.9 tyramine--L-glutamate ligase compare
MMJJ_RS08035 -4.5 -8.5 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS03620 -4.4 -7.4 DUF2097 domain-containing protein compare
MMJJ_RS00355 -4.4 -2.9 ribonuclease P protein component 4 compare
MMJJ_RS00450 -4.4 -2.2 DUF126 domain-containing protein compare
MMJJ_RS05070 -4.3 -2.5 DNA primase catalytic subunit PriS compare
MMJJ_RS06175 -4.3 -2.4 DUF1743 domain-containing protein compare
MMJJ_RS03840 -4.3 -3.0 DHH family phosphoesterase compare
MMJJ_RS02920 -4.2 -2.7 30S ribosomal protein S27ae compare
MMJJ_RS08320 -4.2 -2.8 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS06155 -4.2 -6.3 phosphatidylglycerophosphatase A compare
MMJJ_RS04475 -4.1 -5.5 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS00235 -4.1 -18.3 hypothetical protein compare
MMJJ_RS05930 -4.1 -2.3 cell division protein SepF compare
MMJJ_RS03200 -4.1 -2.3 uroporphyrinogen-III synthase compare
MMJJ_RS04520 -4.1 -7.7 coenzyme F430 synthase compare
MMJJ_RS08625 -4.1 -8.8 magnesium/cobalt transporter CorA compare
MMJJ_RS07380 -4.0 -11.6 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS06510 -4.0 -3.4 LL-diaminopimelate aminotransferase compare
MMJJ_RS03820 -4.0 -4.7 hydrogenase formation protein HypD compare
MMJJ_RS05575 -4.0 -5.3 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS00645 -4.0 -14.7 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS09175 -4.0 -1.4 anthranilate synthase component I compare
MMJJ_RS07980 -4.0 -13.5 biotin synthase BioB compare
MMJJ_RS06695 -4.0 -3.7 amidohydrolase compare
MMJJ_RS03895 -4.0 -4.6 hydrogenase expression/formation protein HypE compare
MMJJ_RS00270 -4.0 -4.5 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS04675 -3.9 -6.5 thiamine pyrophosphate-binding protein compare
MMJJ_RS05650 -3.9 -3.7 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS04155 -3.9 -7.8 hypothetical protein compare
MMJJ_RS08080 -3.9 -12.3 TIGR00300 family protein compare
MMJJ_RS04995 -3.8 -6.7 Tfx family DNA-binding protein compare
MMJJ_RS06040 -3.8 -5.2 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS04685 -3.8 -10.9 carbamoyltransferase HypF compare
MMJJ_RS02045 -3.8 -4.0 molybdenum cofactor guanylyltransferase compare
MMJJ_RS06490 -3.8 -3.5 methanogenesis marker 2 protein compare
MMJJ_RS08095 -3.8 -5.1 cobyric acid synthase CobQ compare
MMJJ_RS01750 -3.8 -3.3 ferrous iron transport protein A compare
MMJJ_RS04800 -3.8 -7.6 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS06270 -3.8 -9.0 dethiobiotin synthase compare
MMJJ_RS05810 -3.8 -7.1 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS03110 -3.7 -5.2 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS04200 -3.7 -5.0 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS01755 -3.7 -2.4 ferrous iron transport protein B compare
MMJJ_RS06220 -3.7 -6.6 polyamine aminopropyltransferase compare
MMJJ_RS05590 -3.7 -2.5 homoserine dehydrogenase compare
MMJJ_RS05620 -3.6 -4.2 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS06600 -3.6 -2.7 DUF555 domain-containing protein compare
MMJJ_RS04730 -3.6 -3.2 tyrosine decarboxylase MfnA compare
MMJJ_RS03190 -3.6 -3.3 phosphopyruvate hydratase compare
MMJJ_RS04700 -3.5 -6.7 deoxyhypusine synthase compare
MMJJ_RS05330 -3.5 -2.4 DNA polymerase II large subunit compare
MMJJ_RS01200 -3.5 -2.4 PRC-barrel domain-containing protein compare
MMJJ_RS07950 -3.5 -4.1 4Fe-4S binding protein compare
MMJJ_RS01880 -3.5 -3.5 RlmE family RNA methyltransferase compare
MMJJ_RS09190 -3.5 -2.6 tryptophan synthase subunit beta compare
MMJJ_RS06225 -3.4 -2.5 adenosylmethionine decarboxylase compare
MMJJ_RS06375 -3.4 -4.8 UbiX family flavin prenyltransferase compare
MMJJ_RS03005 -3.4 -4.8 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS02200 -3.4 -12.3 chorismate pyruvate-lyase family protein compare
MMJJ_RS07000 -3.4 -2.1 TrkH family potassium uptake protein compare
MMJJ_RS07725 -3.4 -8.0 DNA primase DnaG compare
MMJJ_RS04150 -3.3 -3.6 DUF5379 domain-containing protein compare
MMJJ_RS07350 -3.3 -4.3 4Fe-4S binding protein compare
MMJJ_RS06840 -3.3 -4.5 nickel-dependent hydrogenase large subunit compare
MMJJ_RS00370 -3.3 -2.3 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS06725 -3.3 -7.7 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS07705 -3.3 -4.0 GTP-binding protein EngB compare
MMJJ_RS05490 -3.3 -3.1 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS07245 -3.3 -5.8 amidohydrolase family protein compare
MMJJ_RS05445 -3.2 -2.3 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS06760 -3.2 -5.3 Ni-sirohydrochlorin a,c-diamide synthase compare
MMJJ_RS00125 -3.2 -2.8 KEOPS complex subunit Cgi121 compare
MMJJ_RS00275 -3.2 -3.2 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS06930 -3.2 -3.5 type II methionyl aminopeptidase compare
MMJJ_RS02275 -3.2 -5.2 nucleotidyltransferase domain-containing protein compare
MMJJ_RS09135 -3.2 -9.1 archaeosine biosynthesis radical SAM protein RaSEA compare
MMJJ_RS05260 -3.1 -6.0 ATP-grasp domain-containing protein compare
MMJJ_RS01600 -3.1 -3.3 radical SAM protein compare
MMJJ_RS03095 -3.1 -3.0 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS05995 -3.1 -2.7 ATP-binding cassette domain-containing protein compare
MMJJ_RS05225 -3.1 -1.5 Gar1/Naf1 family protein compare
MMJJ_RS03060 -3.1 -3.7 methanogenesis marker 7 protein compare
MMJJ_RS06485 -3.1 -3.7 phosphoglycerate kinase compare
MMJJ_RS01350 -3.0 -8.1 sodium:proton antiporter compare
MMJJ_RS08250 -3.0 -6.8 hydrogenase maturation peptidase HycI compare
MMJJ_RS03760 -3.0 -4.3 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS06750 -3.0 -2.8 homoaconitase large subunit compare
MMJJ_RS06700 -3.0 -5.1 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS08340 -3.0 -7.3 archaeoflavoprotein AfpA compare
MMJJ_RS06240 -3.0 -3.2 dihydropteroate synthase-like protein compare
MMJJ_RS05295 -3.0 -11.5 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS08020 -3.0 -8.0 nucleotidyltransferase domain-containing protein compare
MMJJ_RS03170 -3.0 -9.3 DUF5612 domain-containing protein compare
MMJJ_RS05380 -3.0 -1.5 hypothetical protein compare
MMJJ_RS05950 -3.0 -3.9 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS01070 -2.9 -3.0 PadR family transcriptional regulator compare
MMJJ_RS09130 -2.9 -2.0 NFYB/HAP3 family transcription factor subunit compare
MMJJ_RS03830 -2.9 -10.6 CBS domain-containing protein compare
MMJJ_RS01690 -2.9 -3.7 methanogenesis marker 12 protein compare
MMJJ_RS08850 -2.9 -2.8 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS00205 -2.9 -5.8 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS07995 -2.8 -10.2 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS08535 -2.8 -4.8 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS05935 -2.8 -2.4 Era-like GTP-binding protein compare
MMJJ_RS01345 -2.8 -4.9 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS04790 -2.8 -5.3 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS08155 -2.8 -4.5 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS07875 -2.8 -2.4 FAD-dependent oxidoreductase compare
MMJJ_RS08000 -2.8 -13.3 HesA/MoeB/ThiF family protein compare
MMJJ_RS03650 -2.8 -7.4 class I SAM-dependent methyltransferase family protein compare
MMJJ_RS03785 -2.8 -3.0 hypothetical protein compare
MMJJ_RS08130 -2.8 -1.0 translation initiation factor IF-2 subunit gamma compare
MMJJ_RS06010 -2.8 -5.4 hypothetical protein compare
MMJJ_RS03295 -2.8 -14.0 PHP domain-containing protein compare
MMJJ_RS04010 -2.8 -6.5 archaeal proteasome endopeptidase complex subunit alpha compare
MMJJ_RS06255 -2.8 -7.3 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS00215 -2.8 -2.7 CCA tRNA nucleotidyltransferase compare
MMJJ_RS06390 -2.8 -2.4 NADPH-dependent F420 reductase compare
MMJJ_RS05610 -2.7 -5.6 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS06905 -2.7 -2.4 hypothetical protein compare
MMJJ_RS07370 -2.7 -5.4 tRNA 4-thiouridine(8) synthase ThiI compare
MMJJ_RS01935 -2.7 -3.1 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS06805 -2.7 -3.1 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS01810 -2.7 -1.5 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS06260 -2.7 -6.5 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS02055 -2.6 -13.0 GTP 3',8-cyclase MoaA compare
MMJJ_RS07190 -2.6 -4.0 RtcB family protein compare
MMJJ_RS01475 -2.6 -2.6 signal recognition particle-docking protein FtsY compare
MMJJ_RS03765 -2.6 -8.1 hypothetical protein compare
MMJJ_RS07415 -2.6 -2.5 polyprenyl diphosphate synthase compare
MMJJ_RS04050 -2.6 -1.7 dihydroneopterin aldolase family protein compare
MMJJ_RS06910 -2.6 -3.6 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS03845 -2.6 -4.5 translation initiation factor IF-2 compare
MMJJ_RS04110 -2.6 -5.1 hypothetical protein compare
MMJJ_RS06855 -2.6 -2.1 DUF2104 domain-containing protein compare
MMJJ_RS04650 -2.5 -6.8 nitrogenase iron protein compare
MMJJ_RS06380 -2.5 -4.3 signal recognition particle protein Srp54 compare
MMJJ_RS06185 -2.5 -4.6 cobalamin biosynthesis protein compare
MMJJ_RS00570 -2.5 -2.0 ribonuclease P compare
MMJJ_RS08660 -2.5 -3.5 acetylornithine transaminase compare
MMJJ_RS08010 -2.5 -6.6 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS03490 -2.5 -2.8 ribonuclease VapC compare
MMJJ_RS06250 -2.5 -2.8 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS02040 -2.5 -2.1 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS01415 -2.5 -2.8 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS03150 -2.5 -5.3 2-phospho-L-lactate transferase compare
MMJJ_RS08855 -2.5 -3.4 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS01820 -2.4 -4.2 MJ1244 family protein compare
MMJJ_RS03125 -2.4 -3.7 GMC oxidoreductase compare
MMJJ_RS05415 -2.4 -1.7 hypothetical protein compare
MMJJ_RS05655 -2.4 -5.2 HisA/HisF family protein compare
MMJJ_RS04655 -2.4 -5.3 FAD-dependent oxidoreductase compare
MMJJ_RS01565 -2.4 -7.2 TIGR00267 family protein compare
MMJJ_RS03660 -2.4 -3.6 DUF447 family protein compare
MMJJ_RS04615 -2.4 -3.2 methanogenesis marker 3 protein compare
MMJJ_RS07375 -2.4 -9.0 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMJJ_RS06265 -2.3 -11.1 8-amino-7-oxononanoate synthase compare
MMJJ_RS07430 -2.3 -4.4 ribonuclease VapC compare
MMJJ_RS05065 -2.3 -4.1 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS04145 -2.3 -7.5 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS03865 -2.3 -1.9 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS09375 -2.3 -1.5 hypothetical protein compare
MMJJ_RS01815 -2.3 -4.1 DUF134 domain-containing protein compare
MMJJ_RS07265 -2.3 -8.7 tRNA (adenine-N1)-methyltransferase compare
MMJJ_RS06705 -2.3 -4.2 bifunctional NADP phosphatase/NAD kinase compare
MMJJ_RS08840 -2.2 -3.9 calcium/sodium antiporter compare
MMJJ_RS06860 -2.2 -3.6 hypothetical protein compare
MMJJ_RS06785 -2.2 -7.2 RNA ligase partner protein compare
MMJJ_RS05710 -2.2 -4.0 single-stranded-DNA-specific exonuclease RecJ compare
MMJJ_RS01830 -2.2 -3.0 tRNA(Ile)(2)-agmatinylcytidine synthase compare
MMJJ_RS01860 -2.1 -10.3 tRNA guanosine(15) transglycosylase TgtA compare
MMJJ_RS04565 -2.1 -3.5 sirohydrochlorin nickelochelatase compare
MMJJ_RS01360 -2.1 -2.4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS08575 -2.1 -3.6 hypothetical protein compare
MMJJ_RS08825 -2.1 -4.9 hypothetical protein compare
MMJJ_RS00425 -2.1 -3.3 hypothetical protein compare
MMJJ_RS07960 -2.1 -2.1 quinolinate synthase NadA compare
MMJJ_RS07155 -2.0 -7.0 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS06035 -2.0 -7.7 NADH-quinone oxidoreductase subunit B family protein compare
MMJJ_RS00560 -2.0 -4.1 homoisocitrate dehydrogenase compare
MMJJ_RS07470 -2.0 -1.8 50S ribosome-binding GTPase compare
MMJJ_RS04680 -2.0 -6.4 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMJJ_RS08870 -2.0 -1.3 2-isopropylmalate synthase compare
MMJJ_RS03160 -2.0 -9.7 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS03310 -1.9 -3.0 hypothetical protein compare
MMJJ_RS01870 -1.9 -1.6 methanogenesis marker 15 protein compare
MMJJ_RS03225 -1.9 -2.2 4Fe-4S binding protein compare
MMJJ_RS00475 -1.9 -1.7 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS04750 -1.9 -7.8 5,10-methenyltetrahydromethanopterin hydrogenase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in nitrogen source experiments

For nitrogen source casamino acids across organisms