Experiment set3IT072 for Pseudomonas fluorescens FW300-N2E2

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LB

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -5.2 -7.2 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_4352 -2.8 -4.4 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_5527 -2.4 -2.4 Cold shock protein CspC compare
Pf6N2E2_3460 -2.4 -2.8 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_4162 -2.4 -3.8 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_2753 -2.2 -4.8 HtrA protease/chaperone protein compare
Pf6N2E2_3351 -1.9 -5.3 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_4181 -1.7 -2.0 Organic hydroperoxide resistance protein compare
Pf6N2E2_3461 -1.6 -2.4 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_5006 -1.5 -6.2 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4153 -1.4 -1.6 Sensory box histidine kinase compare
Pf6N2E2_2646 -1.4 -2.5 FIG00953416: hypothetical protein compare
Pf6N2E2_4273 -1.4 -6.8 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_4416 -1.4 -2.0 Tyrosine recombinase XerC compare
Pf6N2E2_2318 -1.4 -7.2 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_5406 -1.3 -2.1 FIG00958224: hypothetical protein compare
Pf6N2E2_1315 -1.3 -2.2 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
Pf6N2E2_1534 -1.3 -3.0 Probable transmembrane protein compare
Pf6N2E2_4206 -1.2 -2.0 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_4205 -1.2 -2.6 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_623 -1.2 -1.6 FIG00954674: hypothetical protein compare
Pf6N2E2_3060 -1.1 -3.4 Outer membrane protein H precursor compare
Pf6N2E2_3373 -1.1 -3.8 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_2325 -1.1 -4.0 Recombination protein RecR compare
Pf6N2E2_3908 -1.1 -4.4 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_2574 -1.1 -1.8 Flagellar synthesis regulator FleN compare
Pf6N2E2_2218 -1.0 -3.4 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_2320 -1.0 -2.5 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_5536 -1.0 -1.1 Holliday junction DNA helicase RuvA compare
Pf6N2E2_4987 -1.0 -1.4 MaoC-like domain protein compare
Pf6N2E2_5337 -1.0 -3.7 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_2080 -1.0 -1.5 hypothetical protein compare
Pf6N2E2_2010 -1.0 -2.1 hypothetical protein compare
Pf6N2E2_2992 -1.0 -3.0 Regulatory protein RecX compare
Pf6N2E2_4204 -1.0 -1.2 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_2706 -1.0 -2.8 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_1694 -1.0 -1.6 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_2940 -1.0 -4.1 OmpA family protein compare
Pf6N2E2_4353 -1.0 -3.7 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_5339 -1.0 -3.7 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_5338 -1.0 -6.2 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_2277 -0.9 -2.3 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_5156 -0.9 -2.2 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_1034 -0.9 -1.8 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_358 -0.9 -2.4 Haloacid dehalogenase, type II compare
Pf6N2E2_464 -0.9 -2.6 Sensory histidine kinase QseC compare
Pf6N2E2_2317 -0.9 -3.1 Putative analog of CcoH, COG3198 compare
Pf6N2E2_5428 -0.9 -4.0 DNA recombination and repair protein RecO compare
Pf6N2E2_3782 -0.9 -2.4 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_5986 -0.9 -2.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2527 -0.8 -3.8 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_3303 -0.8 -2.7 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_2552 -0.8 -4.8 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_3786 -0.8 -2.7 Twin-arginine translocation protein TatC compare
Pf6N2E2_2180 -0.8 -1.6 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_4197 -0.8 -4.4 DNA recombination and repair protein RecF compare
Pf6N2E2_4747 -0.8 -2.1 Transmembrane sensor compare
Pf6N2E2_2274 -0.8 -4.0 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_5452 -0.8 -2.1 hypothetical protein compare
Pf6N2E2_3656 -0.8 -3.3 Probable transcription regulator Mig-14 compare
Pf6N2E2_156 -0.8 -1.7 Carbon storage regulator compare
Pf6N2E2_2217 -0.8 -3.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2549 -0.8 -1.3 hypothetical protein compare
Pf6N2E2_2605 -0.7 -3.6 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_3003 -0.7 -2.4 Bacteriophage protein GP46 compare
Pf6N2E2_5237 -0.7 -1.4 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf6N2E2_2128 -0.7 -3.5 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_2881 -0.7 -2.9 Putative cytoplasmic protein compare
Pf6N2E2_5554 -0.7 -2.8 FIG023103: Predicted transmembrane protein compare
Pf6N2E2_1303 -0.7 -2.6 TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter compare
Pf6N2E2_3635 -0.7 -1.4 FIG00953138: hypothetical protein compare
Pf6N2E2_4803 -0.7 -1.4 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_1810 -0.7 -2.8 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf6N2E2_2126 -0.7 -3.0 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_649 -0.7 -2.0 General secretion pathway protein L compare
Pf6N2E2_502 -0.7 -2.7 hypothetical protein compare
Pf6N2E2_4059 -0.7 -0.9 DNA-binding protein HU-alpha compare
Pf6N2E2_1343 -0.7 -3.0 Transcriptional regulator compare
Pf6N2E2_5703 -0.7 -2.2 outer membrane protein H1 compare
Pf6N2E2_3258 -0.7 -3.0 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_55 -0.7 -1.7 Probable hydrolase compare
Pf6N2E2_342 -0.6 -1.0 DNA-binding response regulator compare
Pf6N2E2_3529 -0.6 -1.1 Toxin A compare
Pf6N2E2_440 -0.6 -1.2 FIG00954920: hypothetical protein compare
Pf6N2E2_6140 -0.6 -0.9 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_3666 -0.6 -2.9 InaA protein compare
Pf6N2E2_4474 -0.6 -3.6 FIG006231: RNA-binding protein compare
Pf6N2E2_4527 -0.6 -1.1 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf6N2E2_6095 -0.6 -1.5 tRNA-Asn-GTT compare
Pf6N2E2_2127 -0.6 -2.4 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_2999 -0.6 -1.3 probable tail fiber assembly protein compare
Pf6N2E2_4372 -0.6 -2.5 FIG00460773: hypothetical protein compare
Pf6N2E2_3338 -0.6 -1.1 1-phosphofructokinase (EC 2.7.1.56) compare
Pf6N2E2_2835 -0.6 -1.5 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf6N2E2_43 -0.6 -3.1 Histidine permease YuiF compare
Pf6N2E2_5739 -0.6 -1.3 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_3039 -0.6 -3.6 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_3568 -0.6 -1.8 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf6N2E2_2755 -0.6 -0.9 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_4364 -0.6 -2.0 Protein YicC compare
Pf6N2E2_4075 -0.6 -3.0 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_2310 -0.6 -3.6 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_5571 -0.6 -1.2 hypothetical protein compare
Pf6N2E2_5842 -0.6 -2.1 Transcriptional regulator, TetR family compare
Pf6N2E2_3835 -0.6 -2.0 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_600 -0.6 -1.9 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_5081 -0.6 -1.8 hypothetical protein compare
Pf6N2E2_5389 -0.6 -3.8 UPF0246 protein YaaA compare
Pf6N2E2_2225 -0.6 -1.3 FIG00953489: hypothetical protein compare
Pf6N2E2_3085 -0.6 -1.7 FIG00954614: hypothetical protein compare
Pf6N2E2_395 -0.6 -1.3 Glutathione S-transferase (EC 2.5.1.18) compare
Pf6N2E2_3257 -0.6 -1.5 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_1886 -0.6 -1.4 hypothetical protein compare
Pf6N2E2_3607 -0.6 -3.2 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_2469 -0.6 -2.8 hypothetical protein compare
Pf6N2E2_2357 -0.6 -2.4 Invasion protein iagA compare
Pf6N2E2_5629 -0.5 -1.9 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_665 -0.5 -2.3 Acetoin dehydrogenase E1 component alpha-subunit (EC 1.2.4.-) compare
Pf6N2E2_2111 -0.5 -1.8 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit A (from data) compare
Pf6N2E2_3255 -0.5 -2.2 YrbA protein compare
Pf6N2E2_5331 -0.5 -3.0 ATPase, AFG1 family compare
Pf6N2E2_3834 -0.5 -2.9 Lipoprotein NlpD compare
Pf6N2E2_4159 -0.5 -2.0 Cytochrome c4 compare
Pf6N2E2_712 -0.5 -2.3 hypothetical protein compare
Pf6N2E2_4659 -0.5 -2.5 Lipoprotein, putative compare
Pf6N2E2_5430 -0.5 -3.5 Transglycosylase, Slt family compare
Pf6N2E2_672 -0.5 -1.6 ABC-type polar amino acid transport system, ATPase component compare
Pf6N2E2_6060 -0.5 -1.7 Propionate catabolism operon transcriptional regulator of GntR family [predicted] compare
Pf6N2E2_1056 -0.5 -0.8 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_2413 -0.5 -0.9 FIG074102: hypothetical protein compare
Pf6N2E2_987 -0.5 -1.5 hypothetical protein compare
Pf6N2E2_5049 -0.5 -1.4 acetyltransferase, GNAT family compare
Pf6N2E2_1806 -0.5 -0.9 hypothetical protein compare
Pf6N2E2_75 -0.5 -1.7 Colicin V production protein compare
Pf6N2E2_2970 -0.5 -1.3 methylated-DNA--protein-cysteine methyltransferase-related protein compare
Pf6N2E2_4531 -0.5 -1.0 hypothetical protein compare
Pf6N2E2_1095 -0.5 -1.6 Opine oxidase subunit C compare
Pf6N2E2_3226 -0.5 -1.4 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_2428 -0.5 -2.0 Thiol-disulfide isomerase and thioredoxins compare
Pf6N2E2_2384 -0.5 -1.8 CmpX compare
Pf6N2E2_698 -0.5 -1.6 Heme d1 biosynthesis protein NirH compare
Pf6N2E2_2340 -0.5 -2.3 Transcriptional regulator, GntR family compare
Pf6N2E2_942 -0.5 -1.2 Mll6465 protein compare
Pf6N2E2_3655 -0.5 -4.0 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_3589 -0.5 -1.2 Lysine decarboxylase family compare
Pf6N2E2_625 -0.5 -2.1 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_5816 -0.5 -0.6 Smr domain protein compare
Pf6N2E2_2967 -0.5 -1.1 Cold shock protein CspA compare
Pf6N2E2_2712 -0.5 -2.9 Permeases of the major facilitator superfamily compare
Pf6N2E2_417 -0.5 -1.2 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf6N2E2_4454 -0.5 -2.2 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_1116 -0.5 -1.0 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_1490 -0.5 -1.5 hypothetical protein compare
Pf6N2E2_4640 -0.5 -0.9 hypothetical protein compare
Pf6N2E2_1624 -0.5 -1.9 MbtH-like protein compare
Pf6N2E2_3494 -0.5 -2.3 Acyl dehydratase compare
Pf6N2E2_314 -0.5 -2.3 Isochorismatase (EC 3.3.2.1) compare
Pf6N2E2_5972 -0.5 -1.8 hypothetical protein compare
Pf6N2E2_5766 -0.5 -0.8 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_2827 -0.5 -0.6 hypothetical protein compare
Pf6N2E2_1337 -0.5 -2.3 Cys regulon transcriptional activator CysB compare
Pf6N2E2_2869 -0.5 -0.8 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_4427 -0.5 -0.9 FIG00954215: hypothetical protein compare
Pf6N2E2_5967 -0.5 -2.1 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf6N2E2_5633 -0.5 -3.8 Aromatic amino acid transport protein AroP compare
Pf6N2E2_4886 -0.5 -3.4 Catalase (EC 1.11.1.6) compare
Pf6N2E2_3027 -0.5 -1.0 Baseplate assembly protein V compare
Pf6N2E2_1614 -0.5 -2.2 Transcriptional regulator, LysR family compare
Pf6N2E2_5840 -0.5 -2.0 hypothetical protein compare
Pf6N2E2_3320 -0.5 -1.6 hypothetical protein compare
Pf6N2E2_5494 -0.5 -1.5 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_2878 -0.5 -1.8 required for 4-hydroxybenzoate and octanoate transport, together with MFP and FUSC proteins (Pf6N2E2_2877, Pf6N2E2_2879) (from data) compare
Pf6N2E2_3300 -0.5 -1.5 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_6082 -0.5 -1.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4415 -0.5 -1.0 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase compare
Pf6N2E2_4187 -0.5 -1.4 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5137 -0.5 -1.7 FIG00956650: hypothetical protein compare
Pf6N2E2_778 -0.5 -1.9 Probable lipoprotein signal peptide compare
Pf6N2E2_5069 -0.5 -1.9 putative Cytochrome bd2, subunit II compare
Pf6N2E2_3641 -0.5 -1.2 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Pf6N2E2_3271 -0.4 -0.9 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_5728 -0.4 -2.0 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_5252 -0.4 -1.1 FIG00956396: hypothetical protein compare
Pf6N2E2_692 -0.4 -1.6 Glucarate dehydratase (EC 4.2.1.40) compare
Pf6N2E2_1499 -0.4 -1.2 ABC transporter amino acid-binding protein compare
Pf6N2E2_3283 -0.4 -2.3 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf6N2E2_3723 -0.4 -2.1 FIG022199: FAD-binding protein compare
Pf6N2E2_1625 -0.4 -1.1 Ferric reductase (1.6.99.14) compare
Pf6N2E2_3969 -0.4 -0.9 Membrane-fusion protein compare
Pf6N2E2_2043 -0.4 -2.8 Twitching motility protein PilT compare
Pf6N2E2_5705 -0.4 -0.7 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_204 -0.4 -1.0 hypothetical protein compare
Pf6N2E2_3370 -0.4 -3.1 DNA repair protein RecN compare
Pf6N2E2_3040 -0.4 -2.4 5-nucleotidase SurE (EC 3.1.3.5) compare
Pf6N2E2_1577 -0.4 -1.6 Glucose 1-dehydrogenase (EC 1.1.1.47) compare
Pf6N2E2_1691 -0.4 -0.8 hypothetical protein compare
Pf6N2E2_1108 -0.4 -1.9 Methyltransferase (EC 2.1.1.-) compare
Pf6N2E2_5877 -0.4 -1.6 Phosphohistidine phosphatase SixA compare
Pf6N2E2_3785 -0.4 -1.5 Twin-arginine translocation protein TatB compare
Pf6N2E2_2258 -0.4 -2.8 Transaldolase (EC 2.2.1.2) compare


Specific Phenotypes

For 1 genes in this experiment