Experiment set3IT072 for Pseudomonas fluorescens FW300-N2E2

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LB

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_5095 +2.5 12.4 Putative inner membrane protein (Fragment) compare
Pf6N2E2_5720 +1.4 12.2 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_1981 +1.2 5.3 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_2022 +1.2 7.8 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_1676 +1.0 3.9 conserved protein associated with acetyl-CoA C-acyltransferase compare
Pf6N2E2_178 +1.0 2.3 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_82 +1.0 2.7 hypothetical protein compare
Pf6N2E2_2519 +0.9 2.4 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_5014 +0.9 1.9 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_5843 +0.9 3.1 hypothetical protein compare
Pf6N2E2_3475 +0.9 2.6 hypothetical protein compare
Pf6N2E2_5226 +0.9 2.7 FIG00955589: hypothetical protein compare
Pf6N2E2_2674 +0.9 1.8 FIG00953856: hypothetical protein compare
Pf6N2E2_4160 +0.8 2.0 Cytochrome c5 compare
Pf6N2E2_146 +0.8 3.4 Transcriptional regulator, MarR family compare
Pf6N2E2_2438 +0.8 2.0 hypothetical protein compare
Pf6N2E2_1656 +0.7 1.9 hypothetical protein compare
Pf6N2E2_1248 +0.7 2.3 MutT/nudix family protein compare
Pf6N2E2_3095 +0.7 1.4 hypothetical protein compare
Pf6N2E2_819 +0.6 2.5 Response regulator compare
Pf6N2E2_405 +0.6 1.6 hypothetical protein compare
Pf6N2E2_902 +0.6 1.7 hypothetical protein compare
Pf6N2E2_5094 +0.6 3.9 FIG00956889: hypothetical protein compare
Pf6N2E2_2507 +0.6 3.2 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_2178 +0.6 3.4 FIG00960144: hypothetical protein compare
Pf6N2E2_946 +0.6 2.0 Transcriptional regulator, LysR family compare
Pf6N2E2_868 +0.6 1.6 Transcriptional regulator, HxlR family compare
Pf6N2E2_434 +0.6 1.4 hypothetical protein compare
Pf6N2E2_229 +0.6 2.3 Putative fumarylacetoacetate (FAA) hydrolase compare
Pf6N2E2_4052 +0.5 1.5 FIG00955481: hypothetical protein compare
Pf6N2E2_1173 +0.5 1.8 hypothetical protein compare
Pf6N2E2_3349 +0.5 1.6 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_2323 +0.5 1.7 Fumarate and nitrate reduction regulatory protein compare
Pf6N2E2_4624 +0.5 0.9 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_6035 +0.5 1.1 alpha/beta hydrolase fold compare
Pf6N2E2_2436 +0.5 3.1 DNA-binding response regulator, LuxR family compare
Pf6N2E2_5024 +0.5 2.4 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
Pf6N2E2_5499 +0.5 1.0 hypothetical protein compare
Pf6N2E2_2592 +0.5 3.3 Flagellar motor switch protein FliG compare
Pf6N2E2_490 +0.5 1.5 PhaK-like protein compare
Pf6N2E2_37 +0.5 2.0 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_3155 +0.5 3.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3171 +0.5 1.1 hypothetical protein compare
Pf6N2E2_241 +0.5 1.2 hypothetical protein compare
Pf6N2E2_1258 +0.5 2.3 FIG00960119: hypothetical protein compare
Pf6N2E2_16 +0.5 1.4 hypothetical protein compare
Pf6N2E2_3726 +0.5 3.0 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like compare
Pf6N2E2_2502 +0.5 2.7 O-antigen acetylase compare
Pf6N2E2_1979 +0.5 3.5 Cytosine-specific DNA methyltransferase (EC 2.1.1.37) compare
Pf6N2E2_919 +0.5 1.7 FIG00954373: hypothetical protein compare
Pf6N2E2_4594 +0.5 1.4 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
Pf6N2E2_1044 +0.5 2.0 hypothetical protein compare
Pf6N2E2_2296 +0.5 1.7 FIG00954767: hypothetical protein compare
Pf6N2E2_309 +0.5 1.3 FIG00957702: hypothetical protein compare
Pf6N2E2_3849 +0.5 1.7 FIG00954739: hypothetical protein compare
Pf6N2E2_2477 +0.5 1.4 ABC transporter ATP-binding protein YvcR compare
Pf6N2E2_5774 +0.5 3.0 FIG00954549: hypothetical protein compare
Pf6N2E2_1162 +0.5 1.4 Transmembrane amino acid efflux protein compare
Pf6N2E2_928 +0.5 1.3 Copper metallochaperone, bacterial analog of Cox17 protein compare
Pf6N2E2_1444 +0.5 2.2 Transcriptional regulator, LysR family compare
Pf6N2E2_4804 +0.5 2.1 ApaG protein compare
Pf6N2E2_3868 +0.5 3.5 Transcriptional regulator, LysR family compare
Pf6N2E2_4540 +0.5 1.9 hypothetical protein compare
Pf6N2E2_829 +0.5 2.1 TesB-like acyl-CoA thioesterase 1 compare
Pf6N2E2_1497 +0.5 2.3 D-2-hydroxyglutarate dehydrogenase compare
Pf6N2E2_2200 +0.5 0.9 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_660 +0.5 1.1 hypothetical protein compare
Pf6N2E2_1074 +0.5 1.5 FIG00953356: hypothetical protein compare
Pf6N2E2_555 +0.5 1.7 Uncharacterized protein ImpB compare
Pf6N2E2_1283 +0.4 1.7 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_1674 +0.4 2.9 Hydroxymethylglutaryl-CoA synthase (EC 2.3.3.10) compare
Pf6N2E2_6031 +0.4 1.7 hypothetical protein compare
Pf6N2E2_5545 +0.4 2.3 Queuosine Biosynthesis QueE Radical SAM compare
Pf6N2E2_3033 +0.4 1.0 hypothetical protein compare
Pf6N2E2_236 +0.4 1.8 putative transcriptional regulator protein compare
Pf6N2E2_4928 +0.4 1.3 Permeases of the major facilitator superfamily compare
Pf6N2E2_4332 +0.4 2.3 hypothetical protein compare
Pf6N2E2_4963 +0.4 1.4 Homoserine dehydrogenase (EC 1.1.1.3) compare
Pf6N2E2_2788 +0.4 1.4 Transcriptional regulator, AsnC family compare
Pf6N2E2_2459 +0.4 1.7 Organic hydroperoxide resistance protein compare
Pf6N2E2_4534 +0.4 1.5 hypothetical protein compare
Pf6N2E2_4369 +0.4 0.9 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_4943 +0.4 1.9 PspA/IM30 family protein compare
Pf6N2E2_831 +0.4 1.0 Ketoacyl reductase hetN (EC 1.3.1.-) compare
Pf6N2E2_98 +0.4 1.5 putative transmembrane protein compare
Pf6N2E2_5730 +0.4 1.8 FIG00954480: hypothetical protein compare
Pf6N2E2_2717 +0.4 2.1 putative cytoplasmic protein compare
Pf6N2E2_3947 +0.4 1.1 Cd(II)/Pb(II)-responsive transcriptional regulator compare
Pf6N2E2_1635 +0.4 1.9 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components compare
Pf6N2E2_2509 +0.4 1.3 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_3204 +0.4 1.0 Rho-specific inhibitor of transcription termination (YaeO) compare
Pf6N2E2_1462 +0.4 1.9 Nicotinamidase/isochorismatase family protein compare
Pf6N2E2_322 +0.4 2.3 Transcriptional regulator, LacI family compare
Pf6N2E2_5694 +0.4 2.5 Flagellar basal-body rod protein FlgB compare
Pf6N2E2_1492 +0.4 1.7 No significant database matches compare
Pf6N2E2_3870 +0.4 1.5 hypothetical protein compare
Pf6N2E2_2597 +0.4 3.3 Flagellar regulatory protein FleQ compare
Pf6N2E2_5761 +0.4 1.5 Transcriptional regulator, TetR family compare
Pf6N2E2_2794 +0.4 0.6 putative membrane protein compare
Pf6N2E2_3138 +0.4 1.3 YaeQ protein compare
Pf6N2E2_2506 +0.4 3.4 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_4982 +0.4 2.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) compare
Pf6N2E2_1660 +0.4 1.4 RND efflux system, membrane fusion protein CmeA compare
Pf6N2E2_736 +0.4 2.0 hypothetical protein compare
Pf6N2E2_1442 +0.4 1.6 Transcriptional regulators of sugar metabolism compare
Pf6N2E2_1212 +0.4 1.6 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_2580 +0.4 1.3 Flagellar biosynthesis protein FliP compare
Pf6N2E2_4996 +0.4 1.3 LSU m3Psi1915 methyltransferase RlmH compare
Pf6N2E2_2146 +0.4 2.2 Porphobilinogen synthase (EC 4.2.1.24) compare
Pf6N2E2_1972 +0.4 1.6 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_1984 +0.4 2.2 probable exported protein STY4558 compare
Pf6N2E2_1997 +0.4 1.8 FIG00956406: hypothetical protein compare
Pf6N2E2_2156 +0.4 1.2 Putative polyketide synthase (Fragment) compare
Pf6N2E2_3973 +0.4 1.7 hypothetical protein compare
Pf6N2E2_509 +0.4 2.3 Glutathione S-transferase, unnamed subgroup 2 (EC 2.5.1.18) compare
Pf6N2E2_6029 +0.4 1.8 hypothetical protein compare
Pf6N2E2_1994 +0.4 1.9 putative lipoprotein compare
Pf6N2E2_3037 +0.4 2.9 RNA polymerase sigma factor RpoS compare
Pf6N2E2_2714 +0.4 1.1 transcriptional regulator, Crp/Fnr family compare
Pf6N2E2_2467 +0.4 1.6 5'-nucleotidase (EC 3.1.3.5) compare
Pf6N2E2_2103 +0.4 1.8 hypothetical protein compare
Pf6N2E2_2013 +0.4 0.8 hypothetical protein compare
Pf6N2E2_5500 +0.4 1.9 MoxR-like ATPases compare
Pf6N2E2_6065 +0.4 0.9 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_1472 +0.4 1.5 Cytochrome b561 compare
Pf6N2E2_2125 +0.4 1.4 hypothetical protein compare
Pf6N2E2_3106 +0.4 1.7 hypothetical protein compare
Pf6N2E2_2667 +0.4 1.8 hypothetical protein compare
Pf6N2E2_2514 +0.4 1.4 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_3237 +0.4 1.6 hypothetical protein compare
Pf6N2E2_2965 +0.4 1.8 FIG00955308: hypothetical protein compare
Pf6N2E2_3595 +0.4 1.7 Large protein containing transglutaminase-like domain compare
Pf6N2E2_6090 +0.4 0.7 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_5679 +0.4 1.8 hypothetical protein compare
Pf6N2E2_923 +0.4 1.1 Haloacid dehalogenase, type II (EC 3.8.1.2) compare
Pf6N2E2_3412 +0.4 2.0 FIG006045: Sigma factor, ECF subfamily compare
Pf6N2E2_4145 +0.4 1.7 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Pf6N2E2_473 +0.4 1.9 putative cytochrome p450 oxidoreductase compare
Pf6N2E2_3571 +0.4 0.9 Urease accessory protein UreF compare
Pf6N2E2_2081 +0.4 0.6 putative exported protein compare
Pf6N2E2_1207 +0.4 1.3 Epoxide hydrolase (EC 3.3.2.9) compare
Pf6N2E2_3716 +0.4 1.4 FIG143263: Glycosyl transferase compare
Pf6N2E2_5508 +0.4 1.1 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_194 +0.4 1.2 Alcohol dehydrogenase (EC 1.1.1.1) compare
Pf6N2E2_4743 +0.4 0.6 hypothetical protein compare
Pf6N2E2_4459 +0.4 1.0 Transcriptional regulator, GntR family compare
Pf6N2E2_504 +0.4 0.8 DNA-binding response regulator compare
Pf6N2E2_2 +0.4 1.3 FIG057993:Thioesterase involved in non-ribosomal peptide biosynthesis compare
Pf6N2E2_1032 +0.4 0.8 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_5546 +0.4 2.3 Queuosine Biosynthesis QueC ATPase compare
Pf6N2E2_3396 +0.4 2.4 hypothetical protein compare
Pf6N2E2_3325 +0.4 1.2 ABC transporter, ATP-binding protein compare
Pf6N2E2_2195 +0.4 1.1 cI compare
Pf6N2E2_494 +0.4 1.3 Transcriptional regulator RutR of pyrimidine catabolism (TetR family) compare
Pf6N2E2_4307 +0.4 1.2 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_519 +0.4 2.3 Myo-inositol 2-dehydrogenase (EC 1.1.1.18) compare
Pf6N2E2_6022 +0.4 1.6 StbE replicon stabilization toxin compare
Pf6N2E2_1396 +0.4 0.9 ABC transporter, ATP-binding protein compare
Pf6N2E2_4508 +0.4 1.4 Transcriptional regulator, TetR family compare
Pf6N2E2_6055 +0.4 1.8 Homoserine kinase (EC 2.7.1.39) compare
Pf6N2E2_1140 +0.3 1.1 Polymyxin resistance protein ArnC, glycosyl transferase (EC 2.4.-.-) compare
Pf6N2E2_6085 +0.3 1.1 Aha1 domain superfamily compare
Pf6N2E2_2265 +0.3 1.4 Copper tolerance protein compare
Pf6N2E2_5050 +0.3 2.0 hypothetical protein compare
Pf6N2E2_4152 +0.3 2.1 alginate biosynthesis transcriptional regulatory protein AlgB compare
Pf6N2E2_1896 +0.3 1.5 hypothetical protein compare
Pf6N2E2_2246 +0.3 2.1 Arabinose efflux permease compare
Pf6N2E2_1712 +0.3 1.5 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_338 +0.3 0.6 Transcriptional regulator, AraC family compare
Pf6N2E2_671 +0.3 1.2 2-methylaconitate racemase compare
Pf6N2E2_3778 +0.3 1.5 FIG00954300: hypothetical protein compare
Pf6N2E2_3404 +0.3 2.4 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps compare
Pf6N2E2_3024 +0.3 1.0 Phage tail fibers compare
Pf6N2E2_1543 +0.3 1.9 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_2196 +0.3 1.2 FIG00953347: hypothetical protein compare
Pf6N2E2_969 +0.3 1.7 Putative uncharacterized protein STY4534 (Putative uncharacterized protein) compare
Pf6N2E2_1177 +0.3 1.9 putative exported protein compare
Pf6N2E2_2420 +0.3 1.2 hypothetical protein compare
Pf6N2E2_2208 +0.3 1.4 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7) compare
Pf6N2E2_2402 +0.3 0.8 hypothetical protein compare
Pf6N2E2_3672 +0.3 2.6 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) compare
Pf6N2E2_3979 +0.3 2.6 Type I secretion system ATPase, LssB family LapB compare
Pf6N2E2_943 +0.3 1.5 Transcriptional regulator, AraC family compare
Pf6N2E2_1878 +0.3 2.0 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_2488 +0.3 1.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1253 +0.3 2.1 transcriptional regulator compare
Pf6N2E2_1333 +0.3 2.2 Ethanolamine operon regulatory protein compare
Pf6N2E2_1885 +0.3 1.5 Transcriptional regulator, AraC family compare
Pf6N2E2_1859 +0.3 1.1 hypothetical protein compare
Pf6N2E2_2626 +0.3 2.5 Flagellar L-ring protein FlgH compare
Pf6N2E2_6088 +0.3 1.7 hypothetical protein compare
Pf6N2E2_4018 +0.3 1.8 RNA polymerase sigma-E factor compare
Pf6N2E2_1006 +0.3 1.6 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) compare
Pf6N2E2_2312 +0.3 0.8 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_4008 +0.3 1.6 hypothetical protein compare
Pf6N2E2_3447 +0.3 1.5 FIG00959330: hypothetical protein compare
Pf6N2E2_2007 +0.3 1.3 Error-prone, lesion bypass DNA polymerase V (UmuC) compare
Pf6N2E2_955 +0.3 0.6 FIG00953508: hypothetical protein compare
Pf6N2E2_4770 +0.3 2.3 Stress induced hydrophobic peptide compare
Pf6N2E2_3382 +0.3 2.2 Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF compare


Specific Phenotypes

For 1 genes in this experiment