Experiment set3IT072 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Dimethyl Sulfoxide 7.5 vol%

200 most important genes:

  gene name fitness t score description  
AO353_12500 -2.7 -2.6 shikimate kinase compare
AO353_06040 -2.5 -4.1 exodeoxyribonuclease V subunit alpha compare
AO353_04190 -2.3 -2.7 glycerol-3-phosphate dehydrogenase compare
AO353_05690 -2.3 -4.1 SsrA-binding protein compare
AO353_16940 -2.3 -5.8 deoxycytidine triphosphate deaminase compare
AO353_11730 -2.2 -8.7 glutamate--cysteine ligase compare
AO353_13155 -2.1 -4.5 hypothetical protein compare
AO353_03615 -2.0 -3.0 cold-shock protein compare
AO353_12790 -2.0 -2.0 hypothetical protein compare
AO353_02005 -1.9 -2.0 hypothetical protein compare
AO353_02250 -1.9 -3.6 chorismate synthase compare
AO353_14150 -1.9 -2.2 peptidylprolyl isomerase compare
AO353_18540 -1.9 -2.8 pseudouridine synthase compare
AO353_21625 -1.8 -2.9 Fe/S biogenesis protein NfuA compare
AO353_10455 -1.8 -2.6 tRNA modification GTPase MnmE compare
AO353_09240 -1.8 -3.3 acetylglutamate kinase compare
AO353_06455 -1.7 -2.8 D-alanyl-D-alanine carboxypeptidase compare
AO353_19605 -1.7 -2.7 hypothetical protein compare
AO353_06050 -1.7 -6.0 exodeoxyribonuclease V subunit gamma compare
AO353_05625 -1.7 -1.6 transcription elongation factor GreA compare
AO353_14940 -1.7 -4.2 malate:quinone oxidoreductase compare
AO353_04175 -1.7 -4.0 glycerol uptake facilitator GlpF compare
AO353_14400 -1.6 -4.2 Fis family transcriptional regulator compare
AO353_13160 -1.6 -2.6 membrane protease HflC compare
AO353_20175 -1.6 -3.3 ATP-dependent Clp protease proteolytic subunit compare
AO353_14420 -1.6 -3.4 molecular chaperone DnaK compare
AO353_06045 -1.6 -6.2 exodeoxyribonuclease V subunit beta compare
AO353_15185 -1.5 -4.7 ATPase compare
AO353_13640 -1.5 -4.3 histidine kinase compare
AO353_00455 -1.5 -2.7 beta-hexosaminidase compare
AO353_27720 -1.5 -4.4 cupin compare
AO353_09865 -1.5 -8.5 hypothetical protein compare
AO353_00825 -1.4 -3.2 porin compare
AO353_01410 -1.4 -3.6 ribonuclease E compare
AO353_07355 -1.4 -4.9 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_05415 -1.4 -2.0 hypothetical protein compare
AO353_20170 -1.3 -4.1 trigger factor compare
AO353_20510 -1.3 -2.3 amidase compare
AO353_08980 -1.2 -2.4 heme biosynthesis operon protein HemX compare
AO353_07445 -1.2 -1.9 pyrroloquinoline quinone biosynthesis protein PqqD compare
AO353_01975 -1.2 -5.2 glycosyl transferase compare
AO353_06390 -1.2 -4.2 magnesium transporter compare
AO353_17085 -1.2 -2.4 hypothetical protein compare
AO353_11770 -1.1 -1.8 molecular chaperone Hsp33 compare
AO353_14740 -1.1 -2.9 GTP-binding protein compare
AO353_20185 -1.1 -4.5 DNA-binding protein compare
AO353_08975 -1.1 -4.1 heme biosynthesis protein HemY compare
AO353_00115 -1.1 -2.2 hypothetical protein compare
AO353_27500 -1.1 -2.2 hypothetical protein compare
AO353_06710 -1.0 -1.4 riboflavin synthase subunit alpha compare
AO353_11750 -1.0 -2.0 ATPase compare
AO353_23400 -1.0 -1.4 hypothetical protein compare
AO353_00495 -1.0 -1.8 DNA topoisomerase I compare
AO353_13460 -1.0 -3.2 phosphate starvation-inducible protein PsiF compare
AO353_15785 -1.0 -5.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO353_05225 -1.0 -8.0 hypothetical protein compare
AO353_20785 -1.0 -3.6 carbon storage regulator CsrA compare
AO353_17640 -1.0 -1.9 serine peptidase compare
AO353_08015 -1.0 -4.4 5,10-methylenetetrahydrofolate reductase compare
AO353_04365 -1.0 -3.6 recombinase XerD compare
AO353_16805 -1.0 -4.0 recombinase RecA compare
AO353_13225 -1.0 -1.9 50S ribosomal protein L9 compare
AO353_22520 -1.0 -1.9 hypothetical protein compare
AO353_27825 -1.0 -2.6 peptidylprolyl isomerase compare
AO353_10320 -1.0 -1.8 hypothetical protein compare
AO353_04520 -1.0 -3.8 elongation factor 4 compare
AO353_06540 -1.0 -1.6 hypothetical protein compare
AO353_01990 -1.0 -4.4 UDP-N-acetylglucosamine 2-epimerase compare
AO353_18325 -1.0 -2.2 hypothetical protein compare
AO353_13140 -1.0 -3.9 tRNA dimethylallyltransferase compare
AO353_07295 -1.0 -7.2 aminoglycoside phosphotransferase compare
AO353_18715 -1.0 -1.6 histidine kinase compare
AO353_15490 -0.9 -1.8 hypothetical protein compare
AO353_12020 -0.9 -2.4 hypothetical protein compare
AO353_10430 -0.9 -2.1 chromosome partitioning protein ParB compare
AO353_02195 -0.9 -2.8 spermidine synthase compare
AO353_19145 -0.9 -2.8 protease HtpX compare
AO353_18285 -0.9 -1.8 3-phosphoglycerate kinase compare
AO353_09060 -0.9 -2.2 hypothetical protein compare
AO353_18480 -0.9 -6.8 potassium transporter TrkH compare
AO353_12650 -0.9 -1.2 hypothetical protein compare
AO353_04220 -0.9 -3.7 chemotaxis protein CheY compare
AO353_08895 -0.9 -3.4 hypothetical protein compare
AO353_20200 -0.9 -2.9 peptidylprolyl isomerase compare
AO353_15250 -0.9 -2.3 cytochrome B compare
AO353_13715 -0.9 -2.5 translation initiation factor Sui1 compare
AO353_00460 -0.9 -2.0 TetR family transcriptional regulator compare
AO353_17445 -0.9 -2.3 hypothetical protein compare
AO353_07145 -0.9 -5.5 anhydro-N-acetylmuramic acid kinase compare
AO353_27650 -0.9 -2.7 cell division protein FtsK compare
AO353_17675 -0.8 -3.3 hypothetical protein compare
AO353_00810 -0.8 -2.1 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) compare
AO353_02600 -0.8 -1.9 alpha-ribazole phosphatase compare
AO353_09000 -0.8 -3.1 argininosuccinate lyase compare
AO353_03000 -0.8 -1.7 topoisomerase II compare
AO353_08110 -0.8 -3.5 glutathione synthetase compare
AO353_19250 -0.8 -1.6 molybdenum cofactor guanylyltransferase compare
AO353_07140 -0.8 -6.2 peptidase M23 compare
AO353_23620 -0.8 -1.6 hypothetical protein compare
AO353_03580 -0.8 -2.1 ATP-dependent DNA helicase RuvB compare
AO353_06720 -0.8 -1.6 NrdR family transcriptional regulator compare
AO353_15460 -0.8 -3.9 cytochrome o ubiquinol oxidase subunit III compare
AO353_09320 -0.8 -4.6 ATP-dependent DNA helicase RecG compare
AO353_07290 -0.8 -4.1 mannose-1-phosphate guanylyltransferase compare
AO353_00430 -0.8 -2.0 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_24595 -0.8 -1.8 hypothetical protein compare
AO353_03515 -0.8 -1.1 cold-shock protein compare
AO353_07155 -0.8 -3.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_10445 -0.8 -1.3 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_08115 -0.8 -3.2 energy transducer TonB compare
AO353_12130 -0.8 -3.0 preprotein translocase subunit SecB compare
AO353_27435 -0.8 -0.8 hypothetical protein compare
AO353_03035 -0.8 -2.8 AraC family transcriptional regulator compare
AO353_28425 -0.8 -2.2 TetR family transcriptional regulator compare
AO353_12135 -0.8 -2.7 rRNA methylase compare
AO353_16440 -0.8 -2.1 ArsC family transcriptional regulator compare
AO353_03710 -0.8 -2.0 formyltetrahydrofolate deformylase compare
AO353_24740 -0.7 -1.8 hypothetical protein compare
AO353_02100 -0.7 -2.2 phosphoglycolate phosphatase compare
AO353_16825 -0.7 -3.0 hypothetical protein compare
AO353_04355 -0.7 -1.4 homoserine dehydrogenase compare
AO353_16925 -0.7 -6.1 AmpG family muropeptide MFS transporter compare
AO353_08685 -0.7 -3.8 N-acetylglutamate synthase compare
AO353_09030 -0.7 -1.2 iron donor protein CyaY compare
AO353_03795 -0.7 -2.6 fumarate hydratase compare
AO353_09475 -0.7 -1.8 hypothetical protein compare
AO353_13200 -0.7 -5.0 exoribonuclease R compare
AO353_03715 -0.7 -1.6 H-NS histone compare
AO353_29270 -0.7 -2.3 type VI secretion system protein compare
AO353_01970 -0.7 -4.5 hypothetical protein compare
AO353_10055 -0.7 -5.1 DNA helicase II compare
AO353_15885 -0.7 -2.8 Cro/Cl family transcriptional regulator compare
AO353_20865 -0.7 -1.5 cold-shock protein compare
AO353_07075 -0.7 -2.7 elongation factor Tu compare
AO353_15905 -0.7 -3.4 outer membrane protein assembly factor BamB compare
AO353_26830 -0.7 -2.4 histidine kinase compare
AO353_00620 -0.7 -1.6 cytochrome C oxidase Cbb3 compare
AO353_10045 -0.7 -2.9 hypothetical protein compare
AO353_09275 -0.7 -1.8 DNA-directed RNA polymerase subunit omega compare
AO353_19295 -0.7 -1.4 hypothetical protein compare
AO353_24625 -0.7 -2.4 hypothetical protein compare
AO353_04400 -0.7 -4.0 transporter compare
AO353_19290 -0.7 -1.6 molybdenum cofactor sulfurase compare
AO353_09720 -0.7 -0.9 hypothetical protein compare
AO353_22685 -0.7 -1.9 peroxidase compare
AO353_05135 -0.7 -3.7 toluene tolerance protein compare
AO353_18500 -0.7 -1.6 chemotaxis protein CheY compare
AO353_02040 -0.7 -1.5 integration host factor subunit beta compare
AO353_16855 -0.7 -2.3 tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA compare
AO353_03585 -0.7 -1.5 ATP-dependent DNA helicase RuvA compare
AO353_13685 -0.7 -2.5 3-dehydroquinate dehydratase compare
AO353_15900 -0.7 -1.5 GTP-binding protein compare
AO353_12825 -0.7 -2.9 hypothetical protein compare
AO353_12575 -0.7 -1.9 type II secretion system protein GspJ compare
AO353_14395 -0.7 -2.2 poly(A) polymerase compare
AO353_03590 -0.7 -1.8 crossover junction endodeoxyribonuclease RuvC compare
AO353_17165 -0.6 -1.8 ATP-dependent helicase compare
AO353_05240 -0.6 -1.6 rod shape-determining protein MreD compare
AO353_15555 -0.6 -2.4 fumarylacetoacetase compare
AO353_02000 -0.6 -1.9 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_16810 -0.6 -1.7 recombinase RecX compare
AO353_11165 -0.6 -4.1 hypothetical protein compare
AO353_10630 -0.6 -2.0 16S rRNA methyltransferase compare
AO353_23840 -0.6 -2.3 hypothetical protein compare
AO353_09315 -0.6 -3.7 LysR family transcriptional regulator compare
AO353_06725 -0.6 -1.3 hypothetical protein compare
AO353_10625 -0.6 -4.9 potassium transporter peripheral membrane component compare
AO353_26970 -0.6 -3.5 glutathione reductase compare
AO353_28490 -0.6 -2.7 MFS transporter compare
AO353_08085 -0.6 -4.6 histidine kinase compare
AO353_16055 -0.6 -1.8 hypothetical protein compare
AO353_22280 -0.6 -1.4 hypothetical protein compare
AO353_15470 -0.6 -4.5 protoheme IX farnesyltransferase compare
AO353_14450 -0.6 -2.6 hemin ABC transporter ATP-binding protein compare
AO353_00760 -0.6 -1.5 hypothetical protein compare
AO353_23955 -0.6 -1.9 RND transporter compare
AO353_25320 -0.6 -1.8 phosphoribosyl-dephospho-CoA transferase compare
AO353_05420 -0.6 -1.2 peptide chain release factor 3 compare
AO353_21945 -0.6 -1.2 protein nirL compare
AO353_07740 -0.6 -3.0 ABC transporter for Carnitine, substrate-binding component (from data) compare
AO353_10945 -0.6 -1.6 cytochrome C compare
AO353_26220 -0.6 -1.3 hypothetical protein compare
AO353_12420 -0.6 -1.8 predicted FeS cluster maintenance protein (from data) compare
AO353_24180 -0.6 -2.5 transcriptional regulator compare
AO353_10500 -0.6 -1.9 acetylornithine aminotransferase compare
AO353_23405 -0.6 -1.0 hypothetical protein compare
AO353_27410 -0.6 -1.8 hypothetical protein compare
AO353_13925 -0.6 -1.0 XRE family transcriptional regulator compare
AO353_09250 -0.6 -1.5 exodeoxyribonuclease III compare
AO353_09265 -0.6 -1.3 hypothetical protein compare
AO353_07580 -0.6 -2.1 glutathione S-transferase compare
AO353_23910 -0.6 -1.7 response regulator compare
AO353_20095 -0.6 -2.5 histidine kinase compare
AO353_00660 -0.6 -1.5 transcriptional regulator compare
AO353_00650 -0.6 -1.4 cytochrome biogenesis protein compare
AO353_18700 -0.6 -1.2 flagellar biogenesis protein compare
AO353_29280 -0.6 -1.7 hypothetical protein compare
AO353_13070 -0.6 -3.3 phosphoserine phosphatase compare
AO353_27695 -0.6 -3.2 isocitrate dehydrogenase compare
AO353_11470 -0.6 -2.0 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress Dimethyl Sulfoxide in Pseudomonas fluorescens FW300-N2E3

For stress Dimethyl Sulfoxide across organisms