Experiment set3IT072 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

MOKA

200 most important genes:

  gene name fitness t score description  
Xcc-8004.271.1 -3.5 -3.4 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.2217.1 -2.4 -4.1 FIG01209779: hypothetical protein compare
Xcc-8004.456.1 -2.3 -2.6 carbonic anhydrase, family 3 compare
Xcc-8004.3324.1 -2.1 -4.3 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.4112.1 -2.0 -4.0 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.846.1 -1.8 -3.3 Protein of unknown function DUF484 compare
Xcc-8004.270.1 -1.7 -6.0 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.4526.1 -1.7 -8.0 Fumarylacetoacetate hydrolase family protein compare
Xcc-8004.1400.1 -1.7 -2.5 Cobalamin synthase (EC 2.7.8.26) compare
Xcc-8004.659.1 -1.7 -3.0 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.4948.1 -1.5 -2.7 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Xcc-8004.4752.1 -1.5 -2.4 DNA topoisomerase I (EC 5.99.1.2) compare
Xcc-8004.1082.1 -1.4 -2.2 FIG01211203: hypothetical protein compare
Xcc-8004.3728.1 -1.4 -1.0 hypothetical protein compare
Xcc-8004.1495.1 -1.4 -2.2 FIG01212489: hypothetical protein compare
Xcc-8004.1204.1 -1.3 -2.4 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Xcc-8004.2346.1 -1.3 -2.1 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.1891.1 -1.2 -2.0 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) compare
Xcc-8004.2579.1 -1.2 -2.3 Transcriptional regulator in PFGI-1-like cluster compare
Xcc-8004.2182.1 -1.2 -7.5 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Xcc-8004.4292.1 -1.2 -1.8 Taurine transport ATP-binding protein TauB compare
Xcc-8004.3498.1 -1.2 -1.4 hypothetical protein compare
Xcc-8004.5192.1 -1.2 -7.4 hypothetical protein compare
Xcc-8004.2389.1 -1.1 -1.4 protein of unknown function DUF1244 compare
Xcc-8004.998.1 -1.1 -2.0 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.5037.1 -1.1 -4.3 ABC-type Na+ efflux pump, permease component compare
Xcc-8004.2259.1 -1.1 -3.9 PhbF compare
Xcc-8004.195.1 -1.1 -1.3 phosphoesterase, putative compare
Xcc-8004.3576.1 -1.1 -5.3 Intracellular PHB depolymerase (EC 3.1.1.-) compare
Xcc-8004.5368.1 -1.1 -2.7 FIG01210868: hypothetical protein compare
Xcc-8004.386.1 -1.1 -2.6 LysR family transcriptional regulator STM3121 compare
Xcc-8004.3979.1 -1.1 -5.4 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.2783.1 -1.1 -2.6 FIG01209963: hypothetical protein compare
Xcc-8004.4416.1 -1.1 -5.6 hypothetical protein compare
Xcc-8004.950.1 -1.0 -1.3 General secretion pathway protein L compare
Xcc-8004.944.1 -1.0 -2.4 General secretion pathway protein F compare
Xcc-8004.4368.1 -1.0 -1.6 FIG01209977: hypothetical protein compare
Xcc-8004.5047.1 -1.0 -2.6 ABC-type multidrug transport system, ATPase component compare
Xcc-8004.3726.1 -1.0 -2.0 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Xcc-8004.623.1 -1.0 -1.8 Phosphoserine phosphatase compare
Xcc-8004.1380.1 -1.0 -1.6 COG2827: putative endonuclease containing a URI domain compare
Xcc-8004.898.1 -1.0 -2.4 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2956.1 -1.0 -1.9 Homoserine kinase (EC 2.7.1.39) compare
Xcc-8004.574.1 -1.0 -4.1 Di-/tripeptide transporter compare
Xcc-8004.1117.1 -1.0 -2.5 hypothetical protein compare
Xcc-8004.2652.1 -1.0 -1.8 response regulator compare
Xcc-8004.3881.1 -1.0 -1.4 hypothetical protein compare
Xcc-8004.2282.1 -1.0 -2.7 tRNA:Cm32/Um32 methyltransferase compare
Xcc-8004.4241.1 -0.9 -1.7 cytidine and deoxycytidylate deaminase family protein compare
Xcc-8004.2110.1 -0.9 -1.3 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4596.1 -0.9 -5.0 hypothetical protein compare
Xcc-8004.2168.1 -0.9 -3.0 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Xcc-8004.645.1 -0.9 -1.0 probable iron binding protein from the HesB_IscA_SufA family compare
Xcc-8004.705.1 -0.9 -1.8 hypothetical protein compare
Xcc-8004.3492.1 -0.9 -1.1 FIG01211425: hypothetical protein compare
Xcc-8004.5363.1 -0.9 -1.8 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Xcc-8004.288.1 -0.9 -1.3 Ferredoxin compare
Xcc-8004.1003.1 -0.9 -1.5 FIG027190: Putative transmembrane protein compare
Xcc-8004.873.1 -0.9 -1.9 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) compare
Xcc-8004.3742.1 -0.9 -2.0 Type III effector compare
Xcc-8004.4836.1 -0.9 -3.1 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
Xcc-8004.1704.1 -0.9 -2.5 FIG01209781: hypothetical protein compare
Xcc-8004.3723.1 -0.9 -1.6 hypothetical protein compare
Xcc-8004.4204.1 -0.8 -2.1 FIG01210014: hypothetical protein compare
Xcc-8004.130.1 -0.8 -3.8 hypothetical protein compare
Xcc-8004.1511.1 -0.8 -1.5 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.5012.1 -0.8 -2.4 FIG01211480: hypothetical protein compare
Xcc-8004.1359.1 -0.8 -3.4 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.2879.1 -0.8 -1.2 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.2921.1 -0.8 -1.7 ferrous iron transport protein compare
Xcc-8004.5193.1 -0.8 -6.6 Outer membrane protein assembly factor YaeT precursor compare
Xcc-8004.4693.1 -0.8 -2.1 hypothetical protein compare
Xcc-8004.4431.1 -0.8 -3.8 General secretion pathway protein F compare
Xcc-8004.1978.1 -0.8 -2.1 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.2922.1 -0.8 -1.6 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.429.1 -0.8 -1.5 hypothetical protein compare
Xcc-8004.2861.1 -0.8 -1.7 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Xcc-8004.4168.1 -0.8 -2.4 GTP-binding and nucleic acid-binding protein YchF compare
Xcc-8004.5352.1 -0.8 -1.2 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Xcc-8004.3304.1 -0.8 -1.3 FIG01211108: hypothetical protein compare
Xcc-8004.1478.1 -0.8 -3.6 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) compare
Xcc-8004.2337.1 -0.8 -2.7 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.5326.1 -0.8 -1.2 Mobile element protein compare
Xcc-8004.4013.1 -0.8 -1.8 FIG000557: hypothetical protein co-occurring with RecR compare
Xcc-8004.3313.1 -0.8 -2.2 LSU ribosomal protein L9p compare
Xcc-8004.5036.1 -0.8 -4.0 Ferric siderophore transport system, periplasmic binding protein TonB compare
Xcc-8004.869.1 -0.8 -1.9 Methanol dehydrogenase large subunit protein (EC 1.1.99.8) compare
Xcc-8004.279.1 -0.8 -1.9 FIG01210420: hypothetical protein compare
Xcc-8004.350.1 -0.8 -1.7 hypothetical protein compare
Xcc-8004.5343.1 -0.8 -3.6 hypothetical protein compare
Xcc-8004.1955.1 -0.8 -3.7 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.4065.1 -0.7 -3.7 Exopolyphosphatase (EC 3.6.1.11) compare
Xcc-8004.2881.1 -0.7 -2.1 FIG01210399: hypothetical protein compare
Xcc-8004.589.1 -0.7 -1.2 hypothetical protein compare
Xcc-8004.1841.1 -0.7 -1.8 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) compare
Xcc-8004.4210.1 -0.7 -3.7 Thymidine phosphorylase (EC 2.4.2.4) compare
Xcc-8004.4200.1 -0.7 -1.4 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly compare
Xcc-8004.3346.1 -0.7 -2.0 hypothetical protein compare
Xcc-8004.3816.1 -0.7 -3.6 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Xcc-8004.3976.1 -0.7 -2.6 2-methylaconitate cis-trans isomerase compare
Xcc-8004.852.1 -0.7 -2.5 ATP-dependent hsl protease ATP-binding subunit HslU compare
Xcc-8004.5230.1 -0.7 -3.0 Gluconolactonase (EC 3.1.1.17) compare
Xcc-8004.1437.1 -0.7 -3.0 Kup system potassium uptake protein compare
Xcc-8004.5039.1 -0.7 -2.7 FIG032621: Hydrolase, alpha/beta hydrolase fold family compare
Xcc-8004.5133.1 -0.7 -1.2 FIG01212313: hypothetical protein compare
Xcc-8004.3939.1 -0.7 -1.4 Putative DNA-binding protein in cluster with Type I restriction-modification system compare
Xcc-8004.234.1 -0.7 -4.7 cardiolipin synthase compare
Xcc-8004.3395.1 -0.7 -1.5 Transcriptional regulator, GntR family compare
Xcc-8004.1249.1 -0.7 -2.6 Transcriptional regulator compare
Xcc-8004.3054.1 -0.7 -1.0 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.144.1 -0.7 -1.9 Putative protein-S-isoprenylcysteine methyltransferase compare
Xcc-8004.5038.1 -0.7 -1.5 ABC-type Na+ transport system, ATPase component compare
Xcc-8004.3798.1 -0.7 -1.8 Anti-sigma B factor RsbT compare
Xcc-8004.2495.1 -0.7 -1.6 hypothetical protein compare
Xcc-8004.1436.1 -0.7 -1.1 Holliday junction DNA helicase RuvA compare
Xcc-8004.2923.1 -0.7 -3.8 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Xcc-8004.2627.1 -0.7 -1.7 Phi-Lf prophage-derived helix-destabilizing protein compare
Xcc-8004.1914.1 -0.7 -1.2 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Xcc-8004.5252.1 -0.7 -2.9 FIG01210658: hypothetical protein compare
Xcc-8004.3647.1 -0.7 -2.2 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Xcc-8004.4398.1 -0.7 -3.4 Serine hydroxymethyltransferase (EC 2.1.2.1) compare
Xcc-8004.3663.1 -0.7 -2.1 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Xcc-8004.2561.1 -0.7 -3.6 FIG01213638: hypothetical protein compare
Xcc-8004.1931.1 -0.7 -2.0 FIG01209787: hypothetical protein compare
Xcc-8004.746.1 -0.7 -2.6 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Xcc-8004.3982.1 -0.7 -3.2 Propionate catabolism operon regulatory protein PrpR compare
Xcc-8004.4862.1 -0.7 -2.2 Phage-related baseplate assembly protein compare
Xcc-8004.1838.1 -0.7 -1.1 FIG002958: hypothetical protein compare
Xcc-8004.4384.1 -0.7 -1.2 hypothetical protein compare
Xcc-8004.127.1 -0.6 -1.0 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.3541.1 -0.6 -2.0 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.5185.1 -0.6 -1.5 Gluconokinase (EC 2.7.1.12) compare
Xcc-8004.3228.1 -0.6 -2.1 hypothetical protein compare
Xcc-8004.3980.1 -0.6 -2.6 2-methylcitrate synthase (EC 2.3.3.5) compare
Xcc-8004.871.1 -0.6 -2.5 FIG01209691: hypothetical protein compare
Xcc-8004.4446.1 -0.6 -2.8 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
Xcc-8004.5317.1 -0.6 -1.4 FIG01210332: hypothetical protein compare
Xcc-8004.4102.1 -0.6 -1.1 FIG01211949: hypothetical protein compare
Xcc-8004.360.1 -0.6 -1.3 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) decarboxylase compare
Xcc-8004.4884.1 -0.6 -1.2 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
Xcc-8004.3787.1 -0.6 -2.1 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Xcc-8004.2449.1 -0.6 -2.3 Glucokinase (EC 2.7.1.2) compare
Xcc-8004.3471.1 -0.6 -1.1 FIG01211539: hypothetical protein compare
Xcc-8004.5168.1 -0.6 -0.8 hypothetical protein compare
Xcc-8004.585.1 -0.6 -1.1 Na(+) H(+) antiporter subunit F compare
Xcc-8004.3676.1 -0.6 -1.6 Translation elongation factor LepA compare
Xcc-8004.3862.1 -0.6 -2.6 Septum site-determining protein MinC compare
Xcc-8004.5125.1 -0.6 -2.3 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent compare
Xcc-8004.4605.1 -0.6 -0.8 FIG001943: hypothetical protein YajQ compare
Xcc-8004.4821.1 -0.6 -1.6 FIG01209726: hypothetical protein compare
Xcc-8004.738.1 -0.6 -1.4 Malonate decarboxylase gamma subunit compare
Xcc-8004.1688.1 -0.6 -2.1 Thiamin biosynthesis lipoprotein ApbE compare
Xcc-8004.4675.1 -0.6 -1.0 FIG01211280: hypothetical protein compare
Xcc-8004.1048.1 -0.6 -1.0 Transcriptional regulator lysR family compare
Xcc-8004.1562.1 -0.6 -1.5 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Xcc-8004.1465.1 -0.6 -2.4 Transporter, LysE family compare
Xcc-8004.1873.1 -0.6 -1.6 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Xcc-8004.3244.1 -0.6 -1.2 DNA repair protein RadC compare
Xcc-8004.2356.1 -0.6 -1.9 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) compare
Xcc-8004.951.1 -0.6 -1.0 General secretion pathway protein M compare
Xcc-8004.874.1 -0.6 -3.5 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) compare
Xcc-8004.740.1 -0.6 -1.5 Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25) compare
Xcc-8004.609.1 -0.6 -0.8 hypothetical protein compare
Xcc-8004.3072.1 -0.6 -1.2 hypothetical protein compare
Xcc-8004.2320.1 -0.6 -2.6 Acetylglutamate kinase (EC 2.7.2.8) compare
Xcc-8004.5073.1 -0.6 -1.9 FIG01210860: hypothetical protein compare
Xcc-8004.5034.1 -0.6 -4.1 Pass1-related protein compare
Xcc-8004.3031.1 -0.6 -2.4 Methyltransferase (EC 2.1.1.-) compare
Xcc-8004.3754.1 -0.6 -1.3 Tryptophan 2,3-dioxygenase (EC 1.13.11.11) compare
Xcc-8004.2357.1 -0.6 -1.8 Segregation and condensation protein B compare
Xcc-8004.3211.1 -0.6 -1.1 protein of unknown function DUF88 compare
Xcc-8004.765.1 -0.6 -2.5 L-fuco-beta-pyranose dehydrogenase (EC 1.1.1.122) compare
Xcc-8004.916.1 -0.6 -1.5 transcriptional regulator compare
Xcc-8004.1222.1 -0.6 -1.4 Glyoxalase family protein compare
Xcc-8004.1646.1 -0.6 -3.0 Proline iminopeptidase (EC 3.4.11.5) compare
Xcc-8004.3815.1 -0.6 -1.4 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Xcc-8004.366.1 -0.6 -1.8 hypothetical protein compare
Xcc-8004.1710.1 -0.6 -2.8 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
Xcc-8004.1606.1 -0.5 -2.2 FIG01211483: hypothetical protein compare
Xcc-8004.4497.1 -0.5 -1.8 Mobile element protein compare
Xcc-8004.861.1 -0.5 -2.0 FIG01211470: hypothetical protein compare
Xcc-8004.391.1 -0.5 -2.4 NAD-dependent protein deacetylase of SIR2 family compare
Xcc-8004.2580.1 -0.5 -1.9 Mobile element protein compare
Xcc-8004.3310.1 -0.5 -2.0 Chromosome partition protein smc compare
Xcc-8004.4046.1 -0.5 -3.5 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.877.1 -0.5 -2.9 hypothetical protein compare
Xcc-8004.1886.1 -0.5 -2.3 FIG01210697: hypothetical protein compare
Xcc-8004.1007.1 -0.5 -1.1 acetylxylan esterase compare
Xcc-8004.2871.1 -0.5 -1.6 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.1748.1 -0.5 -1.6 hypothetical protein compare
Xcc-8004.1694.1 -0.5 -3.8 Ferrichrome-iron receptor compare
Xcc-8004.5205.1 -0.5 -2.0 FIG01210461: hypothetical protein compare
Xcc-8004.353.1 -0.5 -1.0 FIG01210121: hypothetical protein compare
Xcc-8004.2199.1 -0.5 -0.9 Hemerythrin-like protein PA1673 compare
Xcc-8004.3325.1 -0.5 -2.2 3-hydroxyanthranilate 3,4-dioxygenase (EC 1.13.11.6) compare
Xcc-8004.3153.1 -0.5 -2.0 FIG01212307: hypothetical protein compare
Xcc-8004.5387.1 -0.5 -2.5 Glycerate kinase (EC 2.7.1.31) compare
Xcc-8004.2815.1 -0.5 -3.0 Flagellar biosynthesis protein FliL compare
Xcc-8004.2958.1 -0.5 -0.8 tryptophan-rich sensory protein compare
Xcc-8004.704.1 -0.5 -1.6 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in moka experiments