Experiment set3IT072 for Caulobacter crescentus NA1000

Compare to:

PYE with Carbenicillin disodium salt 0.25 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CCNA_02242 +5.4 24.9 PHB granule-associated protein, phasin2 compare
CCNA_01815 +5.0 30.5 nitrogen assimilation regulatory protein NtrC compare
CCNA_00684 +4.8 39.1 anti-sigma factor, ChrR-family compare
CCNA_01964 +4.4 7.3 NADH dehydrogenase compare
CCNA_02416 +4.2 16.0 DNA-binding protein HU compare
CCNA_01814 +4.0 23.1 nitrogen regulation protein ntrB compare
CCNA_00257 +3.9 20.6 adenosylhomocysteinase compare
CCNA_02026 +3.8 16.3 hypothetical protein compare
CCNA_03030 +3.8 23.1 cytochrome c2 compare
CCNA_01525 +3.8 16.9 flagellar biosynthesis repressor flbT compare
CCNA_01712 +3.5 30.3 CopY/TcrY family transcriptional repressor compare
CCNA_03612 +3.5 15.1 HTH XRE-family transcriptional regulator compare
CCNA_01622 +3.4 7.9 Rsh ppGpp hydrolase-synthetase compare
CCNA_03858 +3.4 15.0 protein translocase subunit secB compare
CCNA_02419 +3.4 9.5 TonB1 protein compare
CCNA_02030 +3.4 13.2 hypothetical protein compare
CCNA_03281 +3.3 24.2 AsnC-family transcriptional regulator compare
CCNA_02028 +3.3 8.0 NTF2 superfamily protein compare
CCNA_00324 +3.3 4.8 ExbD-family protein compare
CCNA_01058 +3.3 20.7 helix-turn-helix transcriptional regulator compare
CCNA_00013 +3.2 28.7 protein-PII uridylyltransferase compare
CCNA_02012 +3.2 16.2 metal-dependent hydrolase compare
CCNA_03108 +3.2 21.5 TonB-dependent outer membrane receptor compare
CCNA_02243 +3.2 19.1 D-alanyl-D-alanine serine-type carboxypeptidase compare
CCNA_02103 +3.1 8.7 hypothetical protein compare
CCNA_01593 +3.1 19.3 Xaa-pro aminopeptidase compare
CCNA_02287 +3.1 13.0 TetR-family transcriptional regulator compare
CCNA_02000 +3.1 5.2 SSU ribosomal protein S2P compare
CCNA_00543 +3.1 11.6 methyl-accepting chemotaxis protein compare
CCNA_01851 +3.1 20.2 quinol cytochrome oxidase polypeptide II compare
CCNA_03012 +3.1 13.6 peroxiredoxin compare
CCNA_03287 +3.0 11.2 PadR-family transcriptional regulator compare
CCNA_01526 +3.0 12.0 flagellar biosynthesis regulatory protein flaF compare
CCNA_01393 +2.9 19.6 soluble lytic murein transglycosylase compare
CCNA_01094 +2.9 6.0 hypothetical protein compare
CCNA_00920 +2.9 8.8 hypothetical protein compare
CCNA_00043 +2.9 11.3 N utilization substance protein A NusA compare
CCNA_01780 +2.9 16.4 exopolyphosphatase compare
CCNA_00998 +2.8 12.9 ROS/MUCR transcriptional regulator compare
CCNA_03524 +2.8 17.1 di-/tripeptide transporter compare
CCNA_00892 +2.8 4.3 phosphoenolpyruvate-protein phosphotransferase PtsP compare
CCNA_02957 +2.8 9.1 ArsR-family transcriptional regulator compare
CCNA_01086 +2.8 16.3 GTP-binding protein lepA compare
CCNA_03064 +2.8 15.9 PadR-family transcriptional regulator compare
CCNA_02980 +2.8 17.8 tryptophan 2,3-dioxygenase compare
CCNA_03043 +2.8 12.3 type IV pilin protein pilA compare
CCNA_01453 +2.8 8.5 electron transport complex I subunit, NADH-ubiquinone oxidoreductase compare
CCNA_00699 +2.8 15.9 LSU ribosomal protein L28P compare
CCNA_01826 +2.7 16.0 vitamin B12 receptor compare
CCNA_R0037 +2.7 12.9 tRNA-Glu compare
CCNA_00011 +2.7 7.5 chaperone protein DnaJ compare
CCNA_02025 +2.7 7.8 hypothetical protein compare
CCNA_01624 +2.7 5.7 orotate phosphoribosyltransferase compare
CCNA_00846 +2.7 21.9 proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase compare
CCNA_00518 +2.7 14.2 LSU ribosomal protein L25P compare
CCNA_01850 +2.7 18.1 quinol cytochrome oxidase polypeptide I compare
CCNA_01848 +2.7 14.4 quinol cytochrome oxidase polypeptide IV compare
CCNA_03132 +2.7 7.8 transcriptional regulator, antitoxin protein higA compare
CCNA_03271 +2.7 17.9 methionine gamma-lyase compare
CCNA_00505 +2.6 11.9 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CCNA_01629 +2.6 11.9 signal peptidase I compare
CCNA_03893 +2.6 4.6 hypothetical protein compare
CCNA_01802 +2.6 6.5 hypothetical protein compare
CCNA_01979 +2.6 13.1 LexA repressor compare
CCNA_02250 +2.6 9.4 methylcrotonyl-CoA carboxylase biotin-containing subunit compare
CCNA_02021 +2.6 9.7 hypothetical protein compare
CCNA_03325 +2.6 9.0 hypothetical protein compare
CCNA_00296 +2.6 14.9 phosphate regulon response regulator PhoB compare
CCNA_03961 +2.6 8.6 hypothetical protein compare
CCNA_01849 +2.6 13.9 quinol cytochrome oxidase polypeptide III compare
CCNA_02180 +2.6 6.1 iron-sulfur cluster assembly/repair protein ApbC compare
CCNA_01763 +2.6 13.8 multifunctional aminopeptidase compare
CCNA_00962 +2.6 13.2 MarR-family transcriptional regulator compare
CCNA_03252 +2.5 20.3 CopY/TcrY-family transcriptional regulator compare
CCNA_00392 +2.5 16.4 dihydroorotase compare
CCNA_02663 +2.5 4.3 DnaK suppressor protein DksA compare
CCNA_03289 +2.5 18.9 HicB-family RNA-binding protein compare
CCNA_03805 +2.5 16.5 PadR-family transcriptional regulator compare
CCNA_01361 +2.5 4.6 PepSY superfamily protein compare
CCNA_03129 +2.5 15.4 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_03514 +2.5 13.2 cytochrome c oxidase assembly protein ctaG compare
CCNA_01801 +2.4 10.0 hypothetical protein compare
CCNA_02448 +2.4 12.0 hypothetical protein compare
CCNA_00562 +2.4 17.2 dihydroorotate dehydrogenase compare
CCNA_02339 +2.4 14.4 methyltransferase compare
CCNA_00027 +2.4 6.3 2OG-Fe(II) oxygenase compare
CCNA_01840 +2.4 15.2 MerR-family transcriptional regulator compare
CCNA_00028 +2.4 12.4 TonB-dependent receptor compare
CCNA_00264 +2.4 14.8 C4-dicarboxylate transport protein compare
CCNA_01521 +2.4 12.1 hypothetical protein compare
CCNA_01684 +2.4 13.2 phenylalanine-4-hydroxylase compare
CCNA_01931 +2.4 12.5 TetR-family transcriptional regulator compare
CCNA_00999 +2.4 8.6 PAS-family motility and cell cycle regulatory protein MopJ compare
CCNA_01059 +2.4 19.3 S-layer protein rsaA compare
CCNA_01804 +2.4 13.6 glutathione peroxidase compare
CCNA_03989 +2.3 16.9 MarR-family HTH transcriptional regulator / N-acyltransferase compare
CCNA_03808 +2.3 14.2 organic solvent resistance transport system Ttg2C protein compare
CCNA_03479 +2.3 12.4 MarR-family transcriptional regulator compare
CCNA_03849 +2.3 9.3 fructokinase compare
CCNA_03519 +2.3 5.6 PadR-family transcriptional regulator compare
CCNA_01655 +2.3 12.3 cyclophilin-type peptidylprolyl cis-trans isomerase compare
CCNA_02567 +2.3 14.8 sensory transduction histidine kinase pleC compare
CCNA_01968 +2.3 5.8 pentapeptide repeats containing protein compare
CCNA_03689 +2.3 15.6 alanine dehydrogenase compare
CCNA_02187 +2.3 7.8 adapter for ClpXP proteolysis of tmRNA-tagged proteins SspB compare
CCNA_01573 +2.3 9.1 ArsR-family transcriptional regulator compare
CCNA_03518 +2.3 15.9 cytochrome c oxidase polypeptide II coxB compare
CCNA_02066 +2.3 10.0 phytoene/squalene synthase family protein compare
CCNA_03951 +2.3 11.1 hypothetical protein compare
CCNA_02526 +2.3 15.6 dihydroorotase compare
CCNA_01186 +2.3 9.6 hypothetical protein compare
CCNA_01739 +2.3 11.9 LSU ribosomal protein L9P compare
CCNA_00939 +2.2 8.4 MarR-family transcriptional regulator compare
CCNA_00947 +2.2 15.0 flagellar hook protein FlgE compare
CCNA_01295 +2.2 11.4 integral membrane protein compare
CCNA_03464 +2.2 9.5 glycine cleavage system H protein compare
CCNA_02646 +2.2 3.0 cell division protein MraZ compare
CCNA_01174 +2.2 10.6 LysR-family transcriptional regulator compare
CCNA_00919 +2.2 7.6 hypothetical protein compare
CCNA_02616 +2.2 13.7 4-hydroxyphenylpyruvate dioxygenase compare
CCNA_R0075 +2.2 2.2 tRNA-Met compare
CCNA_03635 +2.2 2.9 hypothetical protein compare
CCNA_01913 +2.2 14.6 MarR-family transcriptional regulator compare
CCNA_02252 +2.2 7.9 methylcrotonyl-CoA carboxylase carboxyl transferase subunit compare
CCNA_01790 +2.2 7.3 protein translocase subunit secG compare
CCNA_00032 +2.2 6.0 antitoxin protein VapB compare
CCNA_02525 +2.2 11.2 aspartate carbamoyltransferase compare
CCNA_01923 +2.1 11.4 ATP-dependent RNA helicase compare
CCNA_02619 +2.1 15.1 stomatin/prohibitin-related protein compare
CCNA_01942 +2.1 11.2 Rrf2 family protein compare
CCNA_01008 +2.1 15.2 urocanate hydratase compare
CCNA_01011 +2.1 9.1 imidazolonepropionase compare
CCNA_02617 +2.1 15.2 histidinol-phosphate aminotransferase compare
CCNA_00447 +2.1 8.4 chemotaxis protein cheD compare
CCNA_03379 +2.1 4.5 Cro/CI family transcriptional regulator compare
CCNA_00441 +2.1 10.8 chemotaxis receiver domain protein cheYI compare
CCNA_01959 +2.1 4.1 3-dehydroquinate dehydratase compare
CCNA_01235 +2.1 10.1 AcrR-family transcriptional regulator compare
CCNA_00756 +2.1 3.7 hypothetical protein compare
CCNA_00944 +2.1 10.4 flagellar hook length determination protein compare
CCNA_03354 +2.1 8.2 5-formyltetrahydrofolate cyclo-ligase compare
CCNA_00031 +2.1 9.1 toxin protein VapC compare
CCNA_01954 +2.1 3.5 ribonuclease E compare
CCNA_03214 +2.1 11.6 hypothetical protein compare
CCNA_03807 +2.1 9.0 organic solvent resistance transport system Ttg2D protein compare
CCNA_00368 +2.0 12.4 phosphonates transport system permease protein phnE compare
CCNA_03876 +2.0 2.6 transcription termination factor rho compare
CCNA_03123 +2.0 12.8 ArsR-family transcriptional regulator compare
CCNA_01420 +2.0 8.2 NrdR family transcriptional regulator compare
CCNA_01813 +2.0 8.6 tRNA-dihydrouridine synthase compare
CCNA_00807 +2.0 3.2 ribonuclease P protein component compare
CCNA_03072 +2.0 8.4 TetR-family transcriptional regulator compare
CCNA_03824 +2.0 13.2 2-polyprenylphenol 6-hydroxylase accessory protein UbiB compare
CCNA_01415 +2.0 13.9 methyltransferase compare
CCNA_02127 +2.0 12.8 oxacillin resistance-associated protein fmtC compare
CCNA_01690 +2.0 5.8 MAPEG family membrane protein compare
CCNA_01603 +2.0 9.9 aspartate aminotransferase compare
CCNA_01963 +2.0 5.7 hypothetical protein compare
CCNA_02447 +2.0 10.5 PspA/IM30 family regulatory protein compare
CCNA_01324 +2.0 7.2 LSU ribosomal protein L30P compare
CCNA_00506 +2.0 12.5 cytochrome b compare
CCNA_02467 +2.0 12.4 polyisoprenylphosphate hexose-1-phosphotransferase pssZ compare
CCNA_00945 +1.9 9.1 chemotaxis protein MotD compare
CCNA_R0054 +1.9 4.4 tRNA-Gly compare
CCNA_00210 +1.9 14.9 TonB-dependent receptor compare
CCNA_02133 +1.9 7.1 glucokinase compare
CCNA_00752 +1.9 11.2 3-hydroxybutyryl-CoA dehydrogenase compare
CCNA_00044 +1.9 5.7 ribosome maturation protein RimP compare
CCNA_03806 +1.9 10.4 outer membrane lipoprotein compare
CCNA_02037 +1.9 11.4 ATP-dependent endopeptidase Lon compare
CCNA_00802 +1.9 5.9 cyd operon protein YbgT compare
CCNA_02222 +1.9 10.3 5-methyltetrahydrofolate--homocysteine methyltransferase homocysteine-binding subunit compare
CCNA_00766 +1.9 13.0 cobalamin adenosyltransferase family protein compare
CCNA_03557 +1.8 7.4 hypothetical protein compare
CCNA_03513 +1.8 7.1 cytochrome c oxidase subunit III coxC compare
CCNA_01728 +1.8 9.9 short chain dehydrogenase compare
CCNA_02315 +1.8 4.8 Cro/CI-family transcriptional regulator compare
CCNA_03420 +1.8 10.1 hypothetical protein compare
CCNA_00834 +1.8 8.0 flagellin FljM compare
CCNA_02316 +1.8 10.7 hypothetical protein compare
CCNA_02156 +1.8 11.4 hypothetical protein compare
CCNA_00189 +1.8 3.7 zinc-finger domain protein compare
CCNA_01678 +1.8 8.7 arginine N-succinyltransferase, beta chain compare
CCNA_02151 +1.8 5.5 exodeoxyribonuclease VII small subunit compare
CCNA_03938 +1.8 5.4 hypothetical protein compare
CCNA_03959 +1.8 1.6 hypothetical protein compare
CCNA_03089 +1.8 9.3 hypothetical protein compare
CCNA_02906 +1.8 12.0 acyltransferase family protein compare
CCNA_00352 +1.8 9.5 integral membrane protein compare
CCNA_00517 +1.8 1.6 peptidyl-tRNA hydrolase compare
CCNA_01505 +1.8 4.4 hypothetical protein compare
CCNA_02164 +1.8 6.5 glutamate dehydrogenase/leucine dehydrogenase compare
CCNA_00448 +1.8 9.0 cheU protein compare
CCNA_02073 +1.8 5.3 cupin domain transcriptional regulator compare
CCNA_00438 +1.8 4.9 hypothetical protein compare
CCNA_03688 +1.8 8.4 AsnC-family transcriptional regulator compare
CCNA_02297 +1.8 7.3 hypoxanthine-guanine phosphoribosyltransferase compare
CCNA_01742 +1.8 8.6 hypothetical protein compare
CCNA_01528 +1.8 9.4 flagellin fljK compare
CCNA_00215 +1.8 8.9 SapC surface layer protein compare


Specific Phenotypes

For 9 genes in this experiment

For stress Carbenicillin disodium salt in Caulobacter crescentus NA1000

For stress Carbenicillin disodium salt across organisms