Experiment set3IT071 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Nalidixic acid sodium salt 0.008 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -7.8 -5.4 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_2824 -5.6 -9.4 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_2823 -5.3 -6.3 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_5527 -5.2 -3.6 Cold shock protein CspC compare
Pf6N2E2_3666 -4.9 -6.5 InaA protein compare
Pf6N2E2_2825 -4.7 -4.6 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_4352 -4.6 -5.5 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_5178 -4.5 -3.1 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_3460 -4.4 -3.0 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_5430 -4.1 -10.9 Transglycosylase, Slt family compare
Pf6N2E2_3835 -4.1 -6.8 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_3060 -4.0 -3.4 Outer membrane protein H precursor compare
Pf6N2E2_5219 -3.8 -10.1 FIG140336: TPR domain protein compare
Pf6N2E2_5536 -3.8 -3.6 Holliday junction DNA helicase RuvA compare
Pf6N2E2_3264 -3.6 -3.3 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_3461 -3.6 -2.1 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_2261 -3.4 -9.8 VacJ-like lipoprotein precursor compare
Pf6N2E2_5534 -3.4 -7.2 FIG000859: hypothetical protein YebC compare
Pf6N2E2_3257 -3.4 -5.9 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_2753 -3.2 -4.6 HtrA protease/chaperone protein compare
Pf6N2E2_4416 -3.2 -4.8 Tyrosine recombinase XerC compare
Pf6N2E2_3258 -3.0 -6.9 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_4417 -3.0 -5.8 Protein of unknown function DUF484 compare
Pf6N2E2_4075 -2.8 -7.5 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_3039 -2.8 -7.0 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_2586 -2.6 -2.9 Hpt domain protein compare
Pf6N2E2_5986 -2.6 -3.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2967 -2.6 -2.6 Cold shock protein CspA compare
Pf6N2E2_3168 -2.5 -6.5 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) conserved
Pf6N2E2_3260 -2.5 -6.4 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_2973 -2.3 -4.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4072 -2.2 -6.6 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_3667 -2.2 -2.3 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_5987 -2.1 -5.3 OmpA family protein compare
Pf6N2E2_5006 -2.1 -8.2 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_5340 -2.1 -4.8 Stringent starvation protein A compare
Pf6N2E2_5727 -2.1 -5.0 FIG00955360: hypothetical protein compare
Pf6N2E2_4187 -2.0 -4.6 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3040 -2.0 -5.5 5-nucleotidase SurE (EC 3.1.3.5) compare
Pf6N2E2_5183 -1.9 -10.1 Paraquat-inducible protein B compare
Pf6N2E2_4273 -1.9 -7.1 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_2992 -1.8 -2.9 Regulatory protein RecX compare
Pf6N2E2_3270 -1.7 -3.6 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_5181 -1.7 -8.0 Paraquat-inducible protein A compare
Pf6N2E2_2674 -1.7 -1.4 FIG00953856: hypothetical protein compare
Pf6N2E2_3833 -1.7 -3.3 hypothetical protein compare
Pf6N2E2_3612 -1.6 -3.8 HflK protein compare
Pf6N2E2_2200 -1.6 -1.7 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_5261 -1.5 -1.5 FIG00956983: hypothetical protein compare
Pf6N2E2_4162 -1.5 -2.8 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_2218 -1.5 -3.2 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_4362 -1.5 -3.7 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_5156 -1.4 -3.0 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_6058 -1.4 -3.5 FIG139976: hypothetical protein compare
Pf6N2E2_5182 -1.4 -5.1 Paraquat-inducible protein A compare
Pf6N2E2_463 -1.4 -4.9 Transcriptional regulatory protein RstA compare
Pf6N2E2_5316 -1.4 -2.1 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_4074 -1.4 -8.6 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_5171 -1.3 -9.0 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_2181 -1.3 -1.7 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_4928 -1.3 -1.7 Permeases of the major facilitator superfamily compare
Pf6N2E2_2772 -1.3 -6.2 Uracil-DNA glycosylase, family 1 conserved
Pf6N2E2_3761 -1.3 -10.4 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_158 -1.3 -6.2 Endonuclease I precursor (EC 3.1.21.1) conserved
Pf6N2E2_5780 -1.3 -5.7 Periplasmic protease compare
Pf6N2E2_3261 -1.3 -3.9 hypothetical protein compare
Pf6N2E2_2217 -1.2 -4.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_464 -1.2 -2.7 Sensory histidine kinase QseC compare
Pf6N2E2_4153 -1.2 -1.9 Sensory box histidine kinase compare
Pf6N2E2_2574 -1.2 -1.2 Flagellar synthesis regulator FleN compare
Pf6N2E2_2219 -1.2 -1.6 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_2473 -1.2 -1.2 Major outer membrane lipoprotein I compare
Pf6N2E2_2474 -1.2 -5.9 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_4205 -1.2 -3.6 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_2106 -1.1 -1.5 hypothetical protein compare
Pf6N2E2_5155 -1.1 -1.9 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_1040 -1.1 -1.7 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_1339 -1.1 -2.0 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_4599 -1.1 -2.6 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_6059 -1.1 -3.8 FIG008443: hypothetical protein compare
Pf6N2E2_3529 -1.1 -1.3 Toxin A compare
Pf6N2E2_1081 -1.0 -1.3 probable membrane protein YPO3302 compare
Pf6N2E2_5845 -1.0 -4.9 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_5677 -1.0 -1.4 Carbon storage regulator compare
Pf6N2E2_1385 -1.0 -2.1 FIG00956261: hypothetical protein compare
Pf6N2E2_3062 -1.0 -2.9 Membrane-associated zinc metalloprotease compare
Pf6N2E2_3782 -1.0 -2.5 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_2693 -1.0 -1.2 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_1774 -1.0 -1.5 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_1670 -1.0 -2.5 conserved membrane protein compare
Pf6N2E2_1797 -1.0 -1.0 Transcriptional regulator compare
Pf6N2E2_3856 -1.0 -5.7 Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) compare
Pf6N2E2_2471 -0.9 -5.1 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_3534 -0.9 -2.6 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_33 -0.9 -2.5 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_3901 -0.9 -2.2 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Pf6N2E2_4263 -0.9 -2.2 Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family compare
Pf6N2E2_88 -0.9 -1.6 hypothetical protein compare
Pf6N2E2_5610 -0.9 -3.4 two-component system sensor protein compare
Pf6N2E2_1173 -0.9 -1.9 hypothetical protein compare
Pf6N2E2_2477 -0.9 -1.6 ABC transporter ATP-binding protein YvcR compare
Pf6N2E2_664 -0.9 -1.2 Acetoin catabolism protein X compare
Pf6N2E2_1705 -0.9 -1.2 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_423 -0.9 -1.4 Putative phosphatase YfbT compare
Pf6N2E2_5337 -0.9 -3.6 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_5846 -0.9 -6.2 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_338 -0.9 -1.5 Transcriptional regulator, AraC family compare
Pf6N2E2_3842 -0.9 -2.7 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_1718 -0.8 -1.2 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) compare
Pf6N2E2_1502 -0.8 -1.4 Two-component system regulatory protein compare
Pf6N2E2_2312 -0.8 -1.7 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_5428 -0.8 -3.3 DNA recombination and repair protein RecO compare
Pf6N2E2_1034 -0.8 -0.9 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_624 -0.8 -2.7 hypothetical protein PA3071 compare
Pf6N2E2_865 -0.8 -1.2 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_1490 -0.8 -1.7 hypothetical protein compare
Pf6N2E2_2068 -0.8 -4.0 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) compare
Pf6N2E2_939 -0.8 -2.3 hypothetical protein compare
Pf6N2E2_1582 -0.8 -1.4 HlyD family secretion protein compare
Pf6N2E2_5605 -0.8 -2.5 FxsA protein compare
Pf6N2E2_4218 -0.8 -4.3 hypothetical protein compare
Pf6N2E2_692 -0.8 -2.8 Glucarate dehydratase (EC 4.2.1.40) compare
Pf6N2E2_2010 -0.8 -0.9 hypothetical protein compare
Pf6N2E2_625 -0.8 -2.5 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_672 -0.8 -1.6 ABC-type polar amino acid transport system, ATPase component compare
Pf6N2E2_1303 -0.8 -2.3 TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter compare
Pf6N2E2_2018 -0.8 -1.4 hypothetical protein compare
Pf6N2E2_3373 -0.8 -2.7 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_2827 -0.8 -1.2 hypothetical protein compare
Pf6N2E2_5133 -0.8 -1.8 FIG00953980: hypothetical protein compare
Pf6N2E2_6081 -0.8 -1.8 Transcriptional regulator, TetR family, in cluster with 2-hydroxychromene-2-carboxylate isomerase family protein, glutathione-dependent compare
Pf6N2E2_3876 -0.7 -2.2 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_962 -0.7 -1.5 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Pf6N2E2_621 -0.7 -3.2 TPR domain protein in aerotolerance operon compare
Pf6N2E2_2699 -0.7 -3.0 Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO compare
Pf6N2E2_4607 -0.7 -1.6 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR compare
Pf6N2E2_4414 -0.7 -2.5 FIG00953808: hypothetical protein compare
Pf6N2E2_5414 -0.7 -5.3 Nucleoid-associated protein compare
Pf6N2E2_660 -0.7 -1.8 hypothetical protein compare
Pf6N2E2_2712 -0.7 -3.7 Permeases of the major facilitator superfamily compare
Pf6N2E2_96 -0.7 -1.9 FIG011065: hypothetical protein compare
Pf6N2E2_1140 -0.7 -1.5 Polymyxin resistance protein ArnC, glycosyl transferase (EC 2.4.-.-) compare
Pf6N2E2_1283 -0.7 -1.7 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_4517 -0.7 -2.8 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) compare
Pf6N2E2_5679 -0.7 -2.4 hypothetical protein compare
Pf6N2E2_2318 -0.7 -3.5 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_922 -0.7 -1.4 FIG00794167: hypothetical protein compare
Pf6N2E2_1294 -0.7 -1.2 Carbon starvation protein A compare
Pf6N2E2_5623 -0.7 -2.0 YciL protein compare
Pf6N2E2_1613 -0.7 -2.0 short-chain dehydrogenase/reductase compare
Pf6N2E2_522 -0.7 -1.9 Inositol transport system sugar-binding protein compare
Pf6N2E2_2459 -0.7 -1.2 Organic hydroperoxide resistance protein compare
Pf6N2E2_530 -0.7 -3.1 Histidine transporter, periplasmic histidine-binding protein compare
Pf6N2E2_2139 -0.7 -1.5 Paraquat-inducible protein A compare
Pf6N2E2_1352 -0.7 -1.3 Cation transport ATPase compare
Pf6N2E2_2317 -0.7 -2.8 Putative analog of CcoH, COG3198 compare
Pf6N2E2_1545 -0.7 -1.9 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_5768 -0.6 -2.0 DNA recombination-dependent growth factor C compare
Pf6N2E2_4459 -0.6 -1.3 Transcriptional regulator, GntR family compare
Pf6N2E2_55 -0.6 -1.7 Probable hydrolase compare
Pf6N2E2_1393 -0.6 -2.0 hypothetical protein compare
Pf6N2E2_469 -0.6 -1.6 lipoprotein, putative compare
Pf6N2E2_2325 -0.6 -3.3 Recombination protein RecR compare
Pf6N2E2_3589 -0.6 -1.5 Lysine decarboxylase family compare
Pf6N2E2_5936 -0.6 -1.3 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) compare
Pf6N2E2_58 -0.6 -1.0 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_973 -0.6 -2.2 Single-stranded DNA-binding protein compare
Pf6N2E2_5903 -0.6 -3.0 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) compare
Pf6N2E2_4678 -0.6 -0.6 hypothetical protein compare
Pf6N2E2_3635 -0.6 -1.2 FIG00953138: hypothetical protein compare
Pf6N2E2_4353 -0.6 -1.8 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_396 -0.6 -2.3 hypothetical protein compare
Pf6N2E2_2083 -0.6 -1.7 hypothetical protein compare
Pf6N2E2_904 -0.6 -1.4 hypothetical protein compare
Pf6N2E2_3839 -0.6 -2.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_2371 -0.6 -1.7 Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) compare
Pf6N2E2_2472 -0.6 -1.7 hypothetical protein compare
Pf6N2E2_6057 -0.6 -1.3 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_2386 -0.6 -1.8 Magnesium and cobalt transport protein CorA compare
Pf6N2E2_1323 -0.6 -1.0 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_4673 -0.6 -2.0 ATP-dependent 23S rRNA helicase DbpA compare
Pf6N2E2_1403 -0.6 -1.7 Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL compare
Pf6N2E2_4174 -0.6 -4.2 Methionine ABC transporter substrate-binding protein compare
Pf6N2E2_525 -0.6 -2.3 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_3130 -0.6 -1.9 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
Pf6N2E2_5338 -0.6 -3.7 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_1821 -0.6 -1.1 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_2552 -0.6 -2.5 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_2313 -0.6 -1.5 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_5345 -0.6 -3.2 LppC putative lipoprotein compare
Pf6N2E2_622 -0.6 -1.5 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_3841 -0.6 -2.1 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3328 -0.6 -1.2 transcriptional regulator compare
Pf6N2E2_1810 -0.6 -2.4 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf6N2E2_2984 -0.6 -1.4 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_927 -0.6 -1.4 (AJ250023) putative polyketide synthase compare
Pf6N2E2_600 -0.6 -0.9 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_3524 -0.6 -1.5 hypothetical protein compare
Pf6N2E2_956 -0.6 -1.9 FIG01210404: hypothetical protein compare
Pf6N2E2_2074 -0.6 -1.0 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare


Specific Phenotypes

For 7 genes in this experiment

For stress Nalidixic acid sodium salt in Pseudomonas fluorescens FW300-N2E2

For stress Nalidixic acid sodium salt across organisms