Experiment set3IT071 for Methanococcus maripaludis S2

Compare to:

H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Casamino Acid FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS07845 -9.8 -3.4 LL-diaminopimelate aminotransferase compare
MMP_RS05500 -9.4 -8.4 2-isopropylmalate synthase compare
MMP_RS03450 -9.1 -3.2 glycine synthesis protein GlyXS (from data) compare
MMP_RS06375 -8.5 -5.2 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS04215 -8.3 -9.1 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS01455 -8.2 -7.8 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS04605 -7.4 -5.1 cobalt ECF transporter T component CbiQ compare
MMP_RS07345 -7.2 -5.0 glycine synthesis protein GlyXL (from data) compare
MMP_RS00520 -7.1 -2.5 RNA polymerase Rpb4 family protein compare
MMP_RS07955 -6.5 -6.9 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS03600 -6.5 -2.9 triose-phosphate isomerase compare
MMP_RS07185 -6.4 -15.4 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS08440 -6.2 -4.6 cell division protein SepF compare
MMP_RS06625 -6.2 -3.2 DNA primase compare
MMP_RS06270 -6.2 -7.3 TIGR00300 family protein compare
MMP_RS07390 -6.1 -4.0 cell division protein FtsZ compare
MMP_RS00895 -6.1 -5.3 hypothetical protein compare
MMP_RS04620 -6.1 -11.4 cobalt transporter CbiM compare
MMP_RS02135 -6.0 -6.0 DUF5612 domain-containing protein compare
MMP_RS07635 -5.9 -10.3 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS09020 -5.9 -2.8 hypothetical protein compare
MMP_RS01915 -5.8 -15.4 DUF354 domain-containing protein compare
MMP_RS03315 -5.7 -2.0 ferrous iron transport protein A compare
MMP_RS01910 -5.7 -10.9 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS01175 -5.7 -6.4 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS04615 -5.7 -3.4 PDGLE domain-containing protein compare
MMP_RS03435 -5.5 -2.7 ketol-acid reductoisomerase compare
MMP_RS07730 -5.4 -2.4 pyruvate synthase subunit beta compare
MMP_RS00300 -5.4 -1.1 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS08820 -5.4 -7.4 hypothetical protein compare
MMP_RS03035 -5.4 -5.7 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS04710 -5.4 -2.6 hypothetical protein compare
MMP_RS01725 -5.4 -6.1 class I SAM-dependent methyltransferase family protein compare
MMP_RS08715 -5.3 -2.7 formylmethanofuran dehydrogenase subunit B compare
MMP_RS07605 -5.2 -6.0 diadenylate cyclase compare
MMP_RS08650 -5.1 -4.8 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS01940 -5.0 -5.1 MoxR family ATPase compare
MMP_RS08635 -5.0 -2.4 UbiA family prenyltransferase compare
MMP_RS01920 -4.9 -14.0 glycosyltransferase family 2 protein compare
MMP_RS01955 -4.8 -3.3 hypothetical protein compare
MMP_RS01905 -4.8 -13.6 glycosyltransferase compare
MMP_RS07005 -4.8 -1.0 4Fe-4S binding protein compare
MMP_RS03700 -4.8 -13.6 sodium:proton antiporter compare
MMP_RS01885 -4.7 -8.9 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS06630 -4.7 -1.3 UPF0058 family protein compare
MMP_RS00515 -4.7 -1.3 DUF655 domain-containing protein compare
MMP_RS01890 -4.7 -5.6 nucleotide sugar dehydrogenase compare
MMP_RS02240 -4.6 -4.9 methanogenesis marker 7 protein compare
MMP_RS04720 -4.6 -4.5 DedA family protein compare
MMP_RS06230 -4.6 -3.7 helix-turn-helix domain-containing protein compare
MMP_RS05245 -4.6 -13.3 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS03400 -4.6 -3.8 archease compare
MMP_RS05640 -4.6 -7.6 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS08165 -4.6 -3.5 phosphoglycerate dehydrogenase compare
MMP_RS01925 -4.5 -9.6 DUF1616 domain-containing protein compare
MMP_RS01830 -4.5 -2.2 tRNA-Val compare
MMP_RS01880 -4.5 -7.6 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS08745 -4.4 -8.9 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS05265 -4.4 -3.6 2-isopropylmalate synthase compare
MMP_RS07600 -4.4 -3.6 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS00685 -4.3 -6.0 2-phospho-L-lactate guanylyltransferase compare
MMP_RS01700 -4.3 -1.2 dihydroxy-acid dehydratase compare
MMP_RS08435 -4.3 -3.5 Era-like GTP-binding protein compare
MMP_RS03390 -4.3 -8.2 malate dehydrogenase compare
MMP_RS01800 -4.2 -5.7 TIGR00303 family protein compare
MMP_RS03960 -4.2 -1.5 hypothetical protein compare
MMP_RS04500 -4.2 -17.2 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS05250 -4.1 -3.2 NFYB/HAP3 family transcription factor subunit compare
MMP_RS00115 -4.1 -18.4 radical SAM protein compare
MMP_RS01900 -4.1 -20.3 hypothetical protein compare
MMP_RS08200 -4.0 -19.9 archaeosine synthase subunit alpha compare
MMP_RS04775 -4.0 -4.2 adenosylhomocysteinase compare
MMP_RS00110 -4.0 -4.7 hypothetical protein compare
MMP_RS05845 -4.0 -2.6 tRNA-intron lyase compare
MMP_RS02345 -3.9 -5.0 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS01875 -3.9 -11.3 N-acetyltransferase compare
MMP_RS05425 -3.9 -6.2 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS02245 -3.9 -5.3 hypothetical protein compare
MMP_RS01325 -3.9 -2.1 dihydroneopterin aldolase family protein compare
MMP_RS03025 -3.9 -8.7 molybdenum cofactor guanylyltransferase compare
MMP_RS06670 -3.9 -5.6 glucose-6-phosphate isomerase compare
MMP_RS08210 -3.9 -2.5 phosphatidylglycerophosphatase A compare
MMP_RS04890 -3.8 -1.1 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS07380 -3.8 -3.2 transcription elongation factor Spt5 compare
MMP_RS04685 -3.8 -4.9 DUF126 domain-containing protein compare
MMP_RS01985 -3.8 -10.0 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS01975 -3.8 -9.1 hypothetical protein compare
MMP_RS06885 -3.8 -3.5 50S ribosome-binding GTPase compare
MMP_RS05515 -3.8 -10.9 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS03110 -3.8 -7.4 glycosyltransferase family 2 protein compare
MMP_RS06285 -3.7 -2.4 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS01020 -3.7 -1.5 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS06370 -3.7 -7.2 biotin synthase BioB compare
MMP_RS06350 -3.7 -9.1 HesA/MoeB/ThiF family protein compare
MMP_RS00305 -3.6 -3.1 phosphoribosyl-ATP diphosphatase compare
MMP_RS05930 -3.6 -3.6 3-isopropylmalate dehydratase large subunit compare
MMP_RS05815 -3.6 -6.7 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS07645 -3.6 -7.5 aldehyde dehydrogenase family protein compare
MMP_RS02145 -3.6 -6.4 winged helix-turn-helix transcriptional regulator compare
MMP_RS06400 -3.6 -2.1 4Fe-4S binding protein compare
MMP_RS07630 -3.5 -2.0 ATP-binding cassette domain-containing protein compare
MMP_RS01380 -3.5 -4.1 PHP domain-containing protein compare
MMP_RS01970 -3.5 -7.2 TIGR04279 domain-containing protein compare
MMP_RS03015 -3.5 -14.0 GTP 3' 8-cyclase MoaA compare
MMP_RS08100 -3.4 -7.6 8-amino-7-oxononanoate synthase compare
MMP_RS06730 -3.4 -2.7 phosphopantothenate/pantothenate synthetase compare
MMP_RS08300 -3.4 -1.5 metal-sulfur cluster assembly factor compare
MMP_RS08095 -3.4 -7.6 dethiobiotin synthase compare
MMP_RS03640 -3.4 -6.2 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS05555 -3.4 -1.9 DUF4040 domain-containing protein compare
MMP_RS06295 -3.4 -9.1 methanogenesis marker 14 protein compare
MMP_RS08460 -3.4 -3.2 proteasome-activating nucleotidase compare
MMP_RS02280 -3.3 -1.1 DUF211 domain-containing protein compare
MMP_RS01220 -3.3 -11.7 hypothetical protein compare
MMP_RS08790 -3.3 -3.2 translation initiation factor IF-2 subunit alpha compare
MMP_RS00695 -3.3 -1.3 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS07735 -3.3 -0.9 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS07090 -3.2 -10.7 tRNA (adenine-N1)-methyltransferase compare
MMP_RS01365 -3.2 -5.0 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS08720 -3.2 -2.3 4Fe-4S binding protein compare
MMP_RS01895 -3.2 -7.8 flippase compare
MMP_RS06120 -3.2 -2.7 UPF0147 family protein compare
MMP_RS01755 -3.1 -1.8 DUF2097 domain-containing protein compare
MMP_RS04790 -3.1 -12.4 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS08105 -3.1 -10.1 6-carboxyhexanoate--CoA ligase compare
MMP_RS01005 -3.1 -2.3 riboflavin synthase compare
MMP_RS01945 -3.1 -6.1 DUF4350 domain-containing protein compare
MMP_RS06900 -3.1 -4.1 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS02800 -3.1 -7.8 nucleotidyltransferase domain-containing protein compare
MMP_RS06355 -3.1 -2.9 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS00750 -3.1 -2.6 fumarate hydratase compare
MMP_RS06895 -3.1 -2.1 selenocysteine-specific translation elongation factor compare
MMP_RS06020 -3.0 -5.6 archaeoflavoprotein AfpA compare
MMP_RS07075 -3.0 -4.3 phosphomannomutase/phosphoglucomutase compare
MMP_RS01545 -3.0 -1.7 CBS domain-containing protein compare
MMP_RS06940 -3.0 -4.0 polyprenyl diphosphate synthase compare
MMP_RS01935 -3.0 -8.4 DUF58 domain-containing protein compare
MMP_RS07750 -2.9 -6.8 DUF357 domain-containing protein compare
MMP_RS07755 -2.9 -1.9 DUF555 domain-containing protein compare
MMP_RS02010 -2.9 -9.2 PHP domain-containing protein compare
MMP_RS08330 -2.8 -3.9 NADH-quinone oxidoreductase subunit H compare
MMP_RS01225 -2.8 -6.6 DUF5379 domain-containing protein compare
MMP_RS01795 -2.8 -2.2 methanogenesis marker 6 protein compare
MMP_RS03445 -2.8 -1.6 methanogenesis marker 17 protein compare
MMP_RS01930 -2.8 -13.4 hypothetical protein compare
MMP_RS04780 -2.8 -3.7 ribonuclease P compare
MMP_RS07200 -2.8 -6.6 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS00720 -2.7 -10.5 metal-dependent hydrolase compare
MMP_RS02900 -2.7 -0.9 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS06925 -2.7 -4.1 ribonuclease VapC4 compare
MMP_RS06110 -2.7 -4.0 ATP-dependent protease LonB compare
MMP_RS06310 -2.7 -2.7 NAD(P)/FAD-dependent oxidoreductase compare
MMP_RS07420 -2.7 -5.2 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS06980 -2.7 -7.3 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS07545 -2.6 -1.3 HTH domain-containing protein compare
MMP_RS01950 -2.6 -8.0 hypothetical protein compare
MMP_RS01960 -2.6 -0.7 hypothetical protein compare
MMP_RS04955 -2.6 -6.8 DNA topoisomerase I compare
MMP_RS01385 -2.5 -1.0 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS00915 -2.5 -6.6 DUF116 domain-containing protein compare
MMP_RS00810 -2.5 -13.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS07365 -2.5 -11.9 2-phosphoglycerate kinase compare
MMP_RS07875 -2.4 -10.2 hypothetical protein compare
MMP_RS03095 -2.4 -8.8 diphthine synthase compare
MMP_RS07195 -2.4 -12.3 M20 family metallo-hydrolase compare
MMP_RS03210 -2.4 -13.3 tRNA guanosine(15) transglycosylase TgtA compare
MMP_RS03580 -2.4 -3.2 signal recognition particle-docking protein FtsY compare
MMP_RS01840 -2.4 -7.0 TIGR00289 family protein compare
MMP_RS06475 -2.3 -4.9 FAD-dependent oxidoreductase compare
MMP_RS06770 -2.3 -6.1 DHH family phosphoesterase compare
MMP_RS03470 -2.3 -9.9 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS03205 -2.3 -1.8 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS08595 -2.3 -1.7 flagellar protein C compare
MMP_RS07540 -2.2 -5.6 CBS domain-containing protein compare
MMP_RS08195 -2.2 -7.0 hypothetical protein compare
MMP_RS05920 -2.2 -0.9 50S ribosomal protein L37e compare
MMP_RS06340 -2.1 -6.4 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS02355 -2.1 -4.3 30S ribosomal protein S27ae compare
MMP_RS07355 -2.1 -1.2 transcription factor S compare
MMP_RS05550 -2.1 -0.9 cation:proton antiporter compare
MMP_RS07580 -2.0 -3.5 DUF356 domain-containing protein compare
MMP_RS08445 -2.0 -3.3 DUF2099 family protein compare
MMP_RS08725 -2.0 -2.3 Ni/Fe hydrogenase subunit alpha compare
MMP_RS05460 -2.0 -13.1 YcaO-related McrA-glycine thioamidation protein compare
MMP_RS01500 -2.0 -2.6 CBS domain-containing protein compare
MMP_RS05700 -1.9 -9.8 TfuA-related McrA-glycine thioamidation protein compare
MMP_RS08760 -1.9 -1.0 hypothetical protein compare
MMP_RS01610 -1.9 -3.5 hypothetical protein compare
MMP_RS07710 -1.9 -4.2 cell division protein FtsZ compare
MMP_RS04585 -1.8 -10.4 AIR synthase related protein compare
MMP_RS02195 -1.8 -3.4 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS05285 -1.8 -6.1 MMPL family transporter compare
MMP_RS01265 -1.8 -2.0 hypothetical protein compare
MMP_RS06725 -1.8 -10.7 hypothetical protein compare
MMP_RS04870 -1.7 -6.1 TIGR02253 family HAD-type hydrolase compare
MMP_RS06105 -1.7 -7.4 hydrogenase maturation peptidase HycI compare
MMP_RS01665 -1.7 -3.8 DUF2111 domain-containing protein compare
MMP_RS06315 -1.6 -1.3 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS06130 -1.6 -3.2 peptidylprolyl isomerase compare
MMP_RS05280 -1.6 -6.4 COG1361 S-layer family protein compare


Specific Phenotypes

For 4 genes in this experiment

For nutrient t2 Sodium acetate in Methanococcus maripaludis S2

For nutrient t2 Sodium acetate across organisms