Experiment set3IT071 for Caulobacter crescentus NA1000

Compare to:

PYE with Carbenicillin disodium salt 0.1 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CCNA_01815 +3.4 23.5 nitrogen assimilation regulatory protein NtrC compare
CCNA_01814 +3.0 18.2 nitrogen regulation protein ntrB compare
CCNA_01712 +2.8 24.9 CopY/TcrY family transcriptional repressor compare
CCNA_03030 +2.7 17.9 cytochrome c2 compare
CCNA_01730 +2.6 14.1 amidophosphoribosyltransferase compare
CCNA_02103 +2.6 9.4 hypothetical protein compare
CCNA_02242 +2.6 17.2 PHB granule-associated protein, phasin2 compare
CCNA_02026 +2.5 11.9 hypothetical protein compare
CCNA_02000 +2.5 7.0 SSU ribosomal protein S2P compare
CCNA_01964 +2.5 10.6 NADH dehydrogenase compare
CCNA_02416 +2.5 12.7 DNA-binding protein HU compare
CCNA_00299 +2.5 16.0 phosphoribosylamine--glycine ligase compare
CCNA_03612 +2.5 11.4 HTH XRE-family transcriptional regulator compare
CCNA_01624 +2.4 7.0 orotate phosphoribosyltransferase compare
CCNA_01774 +2.4 5.2 phosphoribosylglycinamide formyltransferase compare
CCNA_02957 +2.4 6.6 ArsR-family transcriptional regulator compare
CCNA_02030 +2.4 12.2 hypothetical protein compare
CCNA_00013 +2.3 21.0 protein-PII uridylyltransferase compare
CCNA_03287 +2.3 8.9 PadR-family transcriptional regulator compare
CCNA_01094 +2.3 4.7 hypothetical protein compare
CCNA_02028 +2.3 5.6 NTF2 superfamily protein compare
CCNA_00699 +2.3 12.7 LSU ribosomal protein L28P compare
CCNA_01059 +2.3 18.7 S-layer protein rsaA compare
CCNA_03043 +2.2 8.1 type IV pilin protein pilA compare
CCNA_03498 +2.2 19.2 MarR-family transcriptional regulator compare
CCNA_01242 +2.2 16.1 amino acid permease compare
CCNA_03064 +2.2 10.9 PadR-family transcriptional regulator compare
CCNA_02419 +2.2 5.8 TonB1 protein compare
CCNA_00562 +2.2 16.2 dihydroorotate dehydrogenase compare
CCNA_00684 +2.2 13.2 anti-sigma factor, ChrR-family compare
CCNA_01851 +2.2 15.6 quinol cytochrome oxidase polypeptide II compare
CCNA_01775 +2.2 9.1 phosphoribosylformylglycinamidine cyclo-ligase compare
CCNA_03519 +2.1 11.6 PadR-family transcriptional regulator compare
CCNA_02526 +2.1 17.0 dihydroorotase compare
CCNA_03252 +2.1 17.9 CopY/TcrY-family transcriptional regulator compare
CCNA_00392 +2.1 15.1 dihydroorotase compare
CCNA_01453 +2.1 6.4 electron transport complex I subunit, NADH-ubiquinone oxidoreductase compare
CCNA_01058 +2.0 10.7 helix-turn-helix transcriptional regulator compare
CCNA_00028 +2.0 9.6 TonB-dependent receptor compare
CCNA_02025 +2.0 8.6 hypothetical protein compare
CCNA_01848 +2.0 11.9 quinol cytochrome oxidase polypeptide IV compare
CCNA_03012 +2.0 11.6 peroxiredoxin compare
CCNA_00104 +2.0 12.5 orotidine 5'-phosphate decarboxylase compare
CCNA_01979 +2.0 12.5 LexA repressor compare
CCNA_01850 +2.0 14.8 quinol cytochrome oxidase polypeptide I compare
CCNA_01526 +2.0 7.9 flagellar biosynthesis regulatory protein flaF compare
CCNA_02980 +2.0 12.7 tryptophan 2,3-dioxygenase compare
CCNA_01801 +1.9 9.7 hypothetical protein compare
CCNA_01790 +1.9 6.0 protein translocase subunit secG compare
CCNA_00846 +1.9 16.3 proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase compare
CCNA_01415 +1.9 13.7 methyltransferase compare
CCNA_03289 +1.9 13.4 HicB-family RNA-binding protein compare
CCNA_03108 +1.9 14.3 TonB-dependent outer membrane receptor compare
CCNA_01361 +1.9 4.6 PepSY superfamily protein compare
CCNA_02328 +1.9 1.8 cell cycle regulatory protein GcrA compare
CCNA_02127 +1.9 12.7 oxacillin resistance-associated protein fmtC compare
CCNA_01622 +1.9 5.6 Rsh ppGpp hydrolase-synthetase compare
CCNA_03271 +1.9 12.7 methionine gamma-lyase compare
CCNA_01931 +1.9 10.4 TetR-family transcriptional regulator compare
CCNA_03858 +1.9 14.5 protein translocase subunit secB compare
CCNA_02287 +1.9 9.3 TetR-family transcriptional regulator compare
CCNA_R0037 +1.9 9.3 tRNA-Glu compare
CCNA_00505 +1.9 8.7 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CCNA_01573 +1.9 8.3 ArsR-family transcriptional regulator compare
CCNA_03325 +1.9 7.6 hypothetical protein compare
CCNA_01295 +1.9 10.9 integral membrane protein compare
CCNA_02646 +1.9 2.5 cell division protein MraZ compare
CCNA_03961 +1.8 8.4 hypothetical protein compare
CCNA_00518 +1.8 10.5 LSU ribosomal protein L25P compare
CCNA_02586 +1.8 11.3 phosphoribosylformylglycinamidine synthase II compare
CCNA_03989 +1.8 13.4 MarR-family HTH transcriptional regulator / N-acyltransferase compare
CCNA_01840 +1.8 13.8 MerR-family transcriptional regulator compare
CCNA_01849 +1.8 10.2 quinol cytochrome oxidase polypeptide III compare
CCNA_01684 +1.8 10.0 phenylalanine-4-hydroxylase compare
CCNA_00043 +1.8 6.6 N utilization substance protein A NusA compare
CCNA_02732 +1.8 5.4 hypothetical protein compare
CCNA_03805 +1.8 12.2 PadR-family transcriptional regulator compare
CCNA_03281 +1.8 13.2 AsnC-family transcriptional regulator compare
CCNA_01923 +1.8 9.7 ATP-dependent RNA helicase compare
CCNA_00781 +1.8 13.4 two-component receiver protein CpdR compare
CCNA_03936 +1.7 10.2 hypothetical protein compare
CCNA_00161 +1.7 12.9 hypothetical protein compare
CCNA_02021 +1.7 5.7 hypothetical protein compare
CCNA_03420 +1.7 9.2 hypothetical protein compare
CCNA_01655 +1.7 9.7 cyclophilin-type peptidylprolyl cis-trans isomerase compare
CCNA_00375 +1.7 6.6 hypothetical protein compare
CCNA_03479 +1.7 9.4 MarR-family transcriptional regulator compare
CCNA_01521 +1.7 11.0 hypothetical protein compare
CCNA_01629 +1.7 7.5 signal peptidase I compare
CCNA_01324 +1.7 8.1 LSU ribosomal protein L30P compare
CCNA_03379 +1.7 3.9 Cro/CI family transcriptional regulator compare
CCNA_01678 +1.7 8.9 arginine N-succinyltransferase, beta chain compare
CCNA_02525 +1.7 10.3 aspartate carbamoyltransferase compare
CCNA_01968 +1.7 4.2 pentapeptide repeats containing protein compare
CCNA_03951 +1.7 8.1 hypothetical protein compare
CCNA_00027 +1.7 2.8 2OG-Fe(II) oxygenase compare
CCNA_00084 +1.7 11.4 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
CCNA_01959 +1.7 4.1 3-dehydroquinate dehydratase compare
CCNA_03893 +1.7 4.6 hypothetical protein compare
CCNA_01804 +1.7 11.0 glutathione peroxidase compare
CCNA_03129 +1.6 10.8 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_01525 +1.6 8.7 flagellar biosynthesis repressor flbT compare
CCNA_00032 +1.6 5.2 antitoxin protein VapB compare
CCNA_00769 +1.6 8.6 TetR family transcriptional regulator compare
CCNA_01802 +1.6 3.4 hypothetical protein compare
CCNA_01913 +1.6 10.1 MarR-family transcriptional regulator compare
CCNA_02387 +1.6 12.5 glutathione reductase compare
CCNA_01593 +1.6 9.8 Xaa-pro aminopeptidase compare
CCNA_01690 +1.6 5.6 MAPEG family membrane protein compare
CCNA_03123 +1.6 11.1 ArsR-family transcriptional regulator compare
CCNA_01186 +1.6 6.7 hypothetical protein compare
CCNA_03557 +1.6 6.8 hypothetical protein compare
CCNA_00962 +1.6 7.7 MarR-family transcriptional regulator compare
CCNA_03132 +1.6 6.8 transcriptional regulator, antitoxin protein higA compare
CCNA_00447 +1.6 6.3 chemotaxis protein cheD compare
CCNA_02448 +1.6 9.4 hypothetical protein compare
CCNA_00999 +1.6 6.3 PAS-family motility and cell cycle regulatory protein MopJ compare
CCNA_00939 +1.6 6.1 MarR-family transcriptional regulator compare
CCNA_00752 +1.6 9.5 3-hydroxybutyryl-CoA dehydrogenase compare
CCNA_02316 +1.5 9.5 hypothetical protein compare
CCNA_00947 +1.5 10.8 flagellar hook protein FlgE compare
CCNA_03384 +1.5 3.2 LSU ribosomal protein L31P compare
CCNA_01942 +1.5 8.3 Rrf2 family protein compare
CCNA_01739 +1.5 8.2 LSU ribosomal protein L9P compare
CCNA_02617 +1.5 11.5 histidinol-phosphate aminotransferase compare
CCNA_02341 +1.5 7.4 small heat shock protein compare
CCNA_01763 +1.5 9.3 multifunctional aminopeptidase compare
CCNA_00998 +1.5 7.0 ROS/MUCR transcriptional regulator compare
CCNA_00368 +1.5 10.9 phosphonates transport system permease protein phnE compare
CCNA_03689 +1.5 11.0 alanine dehydrogenase compare
CCNA_01405 +1.5 3.3 GIY-YIG domain protein compare
CCNA_02339 +1.5 9.5 methyltransferase compare
CCNA_02330 +1.5 7.2 hypothetical protein compare
CCNA_03863 +1.5 4.2 hypothetical protein compare
CCNA_01006 +1.5 5.3 flagellar hook-basal body complex protein FliE compare
CCNA_02180 +1.5 3.3 iron-sulfur cluster assembly/repair protein ApbC compare
CCNA_01681 +1.5 6.0 RimI-like acetyltransferase compare
CCNA_00011 +1.5 6.8 chaperone protein DnaJ compare
CCNA_00044 +1.5 5.6 ribosome maturation protein RimP compare
CCNA_00543 +1.5 7.3 methyl-accepting chemotaxis protein compare
CCNA_02315 +1.5 5.4 Cro/CI-family transcriptional regulator compare
CCNA_00945 +1.5 7.1 chemotaxis protein MotD compare
CCNA_00031 +1.5 7.0 toxin protein VapC compare
CCNA_02243 +1.5 10.0 D-alanyl-D-alanine serine-type carboxypeptidase compare
CCNA_02728 +1.5 8.8 hypothetical protein compare
CCNA_01235 +1.4 7.7 AcrR-family transcriptional regulator compare
CCNA_01742 +1.4 6.4 hypothetical protein compare
CCNA_02616 +1.4 9.4 4-hydroxyphenylpyruvate dioxygenase compare
CCNA_03464 +1.4 7.1 glycine cleavage system H protein compare
CCNA_03089 +1.4 8.0 hypothetical protein compare
CCNA_01813 +1.4 6.9 tRNA-dihydrouridine synthase compare
CCNA_01619 +1.4 9.3 NYN domain protein compare
CCNA_01008 +1.4 10.5 urocanate hydratase compare
CCNA_01954 +1.4 2.5 ribonuclease E compare
CCNA_00352 +1.4 8.9 integral membrane protein compare
CCNA_02577 +1.4 4.5 phosphoribosylformylglycinamidine synthase, purS component compare
CCNA_02156 +1.4 9.5 hypothetical protein compare
CCNA_00324 +1.4 3.0 ExbD-family protein compare
CCNA_01722 +1.4 3.4 hypothetical protein compare
CCNA_02297 +1.4 6.0 hypoxanthine-guanine phosphoribosyltransferase compare
CCNA_00803 +1.4 5.4 chemotaxis protein cheW compare
CCNA_03688 +1.4 7.3 AsnC-family transcriptional regulator compare
CCNA_02591 +1.4 7.3 glutaredoxin compare
CCNA_01608 +1.4 5.9 TetR-family transcriptional regulator compare
CCNA_03518 +1.4 10.0 cytochrome c oxidase polypeptide II coxB compare
CCNA_00215 +1.4 7.8 SapC surface layer protein compare
CCNA_01826 +1.4 8.6 vitamin B12 receptor compare
CCNA_01393 +1.4 9.9 soluble lytic murein transglycosylase compare
CCNA_03938 +1.4 4.4 hypothetical protein compare
CCNA_01780 +1.4 9.4 exopolyphosphatase compare
CCNA_01528 +1.4 7.6 flagellin fljK compare
CCNA_01580 +1.4 5.8 M15 superfamily membrane peptidase compare
CCNA_01174 +1.4 7.1 LysR-family transcriptional regulator compare
CCNA_02289 +1.4 9.9 MarR/EmrR family transcriptional regulator compare
CCNA_00944 +1.3 7.3 flagellar hook length determination protein compare
CCNA_02583 +1.3 5.4 phosphoribosylformylglycinamidine synthase I compare
CCNA_02447 +1.3 7.7 PspA/IM30 family regulatory protein compare
CCNA_01011 +1.3 6.3 imidazolonepropionase compare
CCNA_02037 +1.3 8.4 ATP-dependent endopeptidase Lon compare
CCNA_01009 +1.3 8.0 N-formylglutamate deformylase compare
CCNA_02379 +1.3 7.8 hypothetical protein compare
CCNA_02910 +1.3 10.5 TonB-dependent receptor compare
CCNA_00147 +1.3 2.4 hypothetical protein compare
CCNA_00834 +1.3 6.9 flagellin FljM compare
CCNA_01420 +1.3 6.9 NrdR family transcriptional regulator compare
CCNA_02619 +1.3 10.0 stomatin/prohibitin-related protein compare
CCNA_01679 +1.3 7.2 succinylglutamic semialdehyde dehydrogenase compare
CCNA_01193 +1.3 9.9 amylosucrase compare
CCNA_02324 +1.3 7.7 heat shock protein 33 hsp33 compare
CCNA_02475 +1.3 9.3 transcriptional regulator vanR compare
CCNA_01086 +1.3 8.6 GTP-binding protein lepA compare
CCNA_00149 +1.3 3.4 Cro/CI-family transcriptional regulator compare
CCNA_00920 +1.3 4.0 hypothetical protein compare
CCNA_00264 +1.3 9.3 C4-dicarboxylate transport protein compare
CCNA_03622 +1.3 7.6 beta-lactamase repressor compare
CCNA_00847 +1.3 5.9 leucine-responsive regulatory protein compare
CCNA_03975 +1.3 7.0 hypothetical protein compare
CCNA_03215 +1.3 8.3 ARO8 family aminotransferase/HTH DNA-binding protein compare
CCNA_00675 +1.3 5.1 VapC-like PIN domain ribonuclease compare
CCNA_01680 +1.3 6.8 succinylarginine dihydrolase compare


Specific Phenotypes

For 2 genes in this experiment

For stress Carbenicillin disodium salt in Caulobacter crescentus NA1000

For stress Carbenicillin disodium salt across organisms