Experiment set3IT071 for Burkholderia phytofirmans PsJN

Compare to:

Carnitine Hydrochloride nitrogen source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS33835 -7.0 -6.8 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS17675 -7.0 -2.4 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS14845 -6.8 -4.7 cysteine synthase compare
BPHYT_RS09500 -6.8 -6.6 glucose-6-phosphate isomerase compare
BPHYT_RS16735 -6.7 -4.7 phosphogluconate dehydratase compare
BPHYT_RS33875 -6.5 -8.9 tryptophan synthase subunit alpha compare
BPHYT_RS12935 -6.5 -8.6 chemotaxis protein CheY compare
BPHYT_RS12150 -6.5 -15.1 PII uridylyl-transferase compare
BPHYT_RS15710 -6.5 -3.8 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS13705 -6.4 -6.3 chorismate synthase compare
BPHYT_RS02905 -6.4 -24.0 RNA polymerase subunit sigma-54 compare
BPHYT_RS17395 -6.2 -2.2 anthranilate synthase subunit II compare
BPHYT_RS33915 -6.2 -8.5 isopropylmalate isomerase compare
BPHYT_RS16245 -6.2 -6.0 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS33880 -6.1 -6.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS01595 -6.1 -12.8 homoserine O-acetyltransferase compare
BPHYT_RS17890 -6.0 -3.6 shikimate kinase compare
BPHYT_RS17690 -5.9 -11.7 imidazole glycerol phosphate synthase compare
BPHYT_RS17400 -5.9 -7.5 anthranilate phosphoribosyltransferase compare
BPHYT_RS06555 -5.8 -10.4 ketol-acid reductoisomerase compare
BPHYT_RS12985 -5.8 -3.8 amino acid acetyltransferase compare
BPHYT_RS17855 -5.8 -14.5 glutamate synthase compare
BPHYT_RS01590 -5.7 -6.8 methionine biosynthesis protein MetW compare
BPHYT_RS04965 -5.7 -8.6 ATP-binding protein compare
BPHYT_RS17670 -5.5 -5.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS15920 -5.5 -9.9 argininosuccinate synthase compare
BPHYT_RS08960 -5.4 -3.1 threonine synthase compare
BPHYT_RS25095 -5.4 -3.7 AraC family transcriptional regulator compare
BPHYT_RS15915 -5.4 -10.4 ornithine carbamoyltransferase compare
BPHYT_RS17685 -5.3 -10.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS33865 -5.3 -9.6 tryptophan synthase alpha chain compare
BPHYT_RS33900 -5.3 -13.4 3-isopropylmalate dehydrogenase compare
BPHYT_RS04725 -5.3 -9.4 sulfite reductase compare
BPHYT_RS25110 -5.3 -2.6 sarcosine oxidase subunit delta compare
BPHYT_RS17885 -5.2 -7.9 3-dehydroquinate synthase compare
BPHYT_RS33645 -5.2 -7.1 homoserine kinase compare
BPHYT_RS06975 -5.2 -3.5 glutamate racemase compare
BPHYT_RS06610 -5.1 -2.4 triosephosphate isomerase compare
BPHYT_RS18320 -5.1 -12.7 orotate phosphoribosyltransferase compare
BPHYT_RS06545 -5.1 -13.1 acetolactate synthase compare
BPHYT_RS17405 -5.0 -1.7 indole-3-glycerol phosphate synthase compare
BPHYT_RS08850 -5.0 -3.4 transcriptional regulator compare
BPHYT_RS25220 -5.0 -3.1 ferredoxin oxidoreductase compare
BPHYT_RS17390 -5.0 -15.2 anthranilate synthase subunit I compare
BPHYT_RS12940 -5.0 -6.2 signal transduction histidine kinase compare
BPHYT_RS06900 -5.0 -6.8 aspartate aminotransferase compare
BPHYT_RS09515 -5.0 -4.8 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS16675 -4.9 -3.4 dihydroorotase compare
BPHYT_RS14910 -4.8 -9.3 chorismate mutase compare
BPHYT_RS14895 -4.7 -3.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS08955 -4.6 -5.5 homoserine dehydrogenase compare
BPHYT_RS06045 -4.6 -9.0 transaldolase compare
BPHYT_RS17680 -4.6 -4.0 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS06405 -4.5 -5.8 phosphoribosylamine--glycine ligase compare
BPHYT_RS12530 -4.3 -5.7 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS04955 -4.2 -2.0 methionyl-tRNA synthetase compare
BPHYT_RS14190 -4.0 -8.1 carbamoyl phosphate synthase large subunit compare
BPHYT_RS16835 -4.0 -8.4 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS25205 -3.9 -12.9 electron transfer flavoprotein subunit alpha conserved
BPHYT_RS22375 -3.9 -9.7 4-hydroxybenzoyl-CoA thioesterase conserved
BPHYT_RS05225 -3.8 -12.0 phosphoenolpyruvate carboxylase compare
BPHYT_RS16840 -3.8 -4.5 transketolase compare
BPHYT_RS33905 -3.8 -1.8 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS17715 -3.7 -6.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS02570 -3.6 -5.6 phosphocarrier protein HPr compare
BPHYT_RS03150 -3.6 -13.7 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS04740 -3.6 -9.2 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS04720 -3.5 -6.8 transcriptional regulator compare
BPHYT_RS16270 -3.5 -3.0 phosphoglycerate kinase compare
BPHYT_RS22385 -3.5 -11.8 hypothetical protein conserved
BPHYT_RS17700 -3.5 -4.4 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS25180 -3.5 -3.2 serine hydroxymethyltransferase compare
BPHYT_RS25210 -3.5 -1.7 drug:proton antiporter compare
BPHYT_RS16255 -3.4 -4.6 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS25070 -3.4 -1.6 choline ABC transporter permease compare
BPHYT_RS03640 -3.4 -3.3 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS02650 -3.3 -2.0 membrane protein compare
BPHYT_RS16905 -3.3 -7.6 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS22380 -3.3 -5.7 Carnitine 3-dehydrogenase (EC 1.1.1.108) (from data) conserved
BPHYT_RS33840 -3.3 -6.2 amidophosphoribosyltransferase compare
BPHYT_RS22390 -3.2 -9.3 glycine/betaine ABC transporter substrate-binding protein conserved
BPHYT_RS18705 -3.2 -2.4 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS14195 -3.1 -4.2 carbamoyl phosphate synthase small subunit compare
BPHYT_RS25115 -3.1 -7.2 sarcosine oxidase subunit alpha conserved
BPHYT_RS33920 -2.9 -8.6 type II citrate synthase compare
BPHYT_RS02590 -2.9 -7.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS19785 -2.8 -2.2 chemotaxis protein CheY compare
BPHYT_RS08565 -2.8 -1.2 dihydroorotate dehydrogenase compare
BPHYT_RS22395 -2.8 -5.5 AraC family transcriptional regulator conserved
BPHYT_RS03535 -2.7 -5.5 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS25335 -2.7 -1.6 hypothetical protein compare
BPHYT_RS08030 -2.7 -4.5 transposase compare
BPHYT_RS04745 -2.7 -4.6 sulfate adenylyltransferase compare
BPHYT_RS12845 -2.5 -13.5 ATPase compare
BPHYT_RS10100 -2.5 -5.4 dihydroxy-acid dehydratase compare
BPHYT_RS15075 -2.5 -2.2 dihydrokaempferol 4-reductase compare
BPHYT_RS04730 -2.5 -3.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS13220 -2.4 -8.0 phosphomethylpyrimidine synthase compare
BPHYT_RS17380 -2.4 -7.6 ribulose-phosphate 3-epimerase compare
BPHYT_RS25105 -2.4 -5.2 sarcosine oxidase subunit beta conserved
BPHYT_RS02690 -2.4 -10.6 protoheme IX farnesyltransferase compare
BPHYT_RS12465 -2.3 -2.4 inositol monophosphatase compare
BPHYT_RS25065 -2.3 -1.5 glycine/betaine ABC transporter ATPase compare
BPHYT_RS25200 -2.3 -3.1 (Fe-S)-binding protein compare
BPHYT_RS02865 -2.3 -3.4 hypothetical protein compare
BPHYT_RS02640 -2.2 -11.5 cytochrome C oxidase compare
BPHYT_RS27175 -2.2 -1.2 DNA-binding protein compare
BPHYT_RS06070 -2.1 -7.9 cytochrome C compare
BPHYT_RS16435 -2.1 -12.3 alcohol dehydrogenase compare
BPHYT_RS05960 -2.1 -7.1 endoribonuclease L-PSP compare
BPHYT_RS03625 -2.1 -7.9 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS02610 -2.1 -3.0 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS02435 -2.0 -1.6 hypothetical protein compare
BPHYT_RS17100 -2.0 -7.0 RNA pyrophosphohydrolase compare
BPHYT_RS20070 -1.9 -3.2 hypothetical protein compare
BPHYT_RS17265 -1.9 -1.7 cell division protein compare
BPHYT_RS02665 -1.9 -10.0 MFS transporter compare
BPHYT_RS36275 -1.9 -2.9 hypothetical protein compare
BPHYT_RS18340 -1.9 -2.5 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS25780 -1.8 -1.5 DeoR faimly transcriptional regulator compare
BPHYT_RS29520 -1.8 -1.2 hypothetical protein compare
BPHYT_RS06685 -1.8 -1.6 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS18965 -1.8 -1.7 chemotaxis protein CheY compare
BPHYT_RS06065 -1.8 -8.2 cytochrome C compare
BPHYT_RS16975 -1.7 -6.4 shikimate 5-dehydrogenase compare
BPHYT_RS14855 -1.7 -1.6 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS16430 -1.7 -10.0 cytochrome C compare
BPHYT_RS33535 -1.7 -12.5 RNA polymerase sigma factor RpoD compare
BPHYT_RS29720 -1.7 -1.6 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
BPHYT_RS12840 -1.7 -3.2 pyruvate dehydrogenase compare
BPHYT_RS14915 -1.6 -5.1 phosphoserine aminotransferase compare
BPHYT_RS14900 -1.6 -2.5 prephenate dehydrogenase compare
BPHYT_RS25100 -1.6 -2.3 serine dehydratase compare
BPHYT_RS02525 -1.6 -8.0 membrane protein compare
BPHYT_RS15620 -1.6 -3.6 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS09145 -1.6 -6.4 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS03725 -1.6 -1.7 serine hydroxymethyltransferase compare
BPHYT_RS16345 -1.6 -4.1 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS02860 -1.6 -1.1 membrane protein compare
BPHYT_RS05010 -1.5 -4.7 RpiR family transcriptional regulator compare
BPHYT_RS18420 -1.5 -2.7 hypothetical protein compare
BPHYT_RS08130 -1.5 -1.7 transposase compare
BPHYT_RS03570 -1.5 -5.2 heat-inducible transcription repressor HrcA compare
BPHYT_RS03645 -1.5 -2.2 tRNA dimethylallyltransferase compare
BPHYT_RS28575 -1.4 -1.1 transcriptional regulator compare
BPHYT_RS03520 -1.4 -1.9 ATP--cobalamin adenosyltransferase compare
BPHYT_RS06075 -1.4 -5.0 hypothetical protein compare
BPHYT_RS03400 -1.4 -1.2 ATP-dependent DNA helicase RecG compare
BPHYT_RS28930 -1.4 -1.1 chromosome partitioning protein ParA compare
BPHYT_RS14105 -1.4 -8.9 exopolyphosphatase compare
BPHYT_RS33125 -1.4 -1.7 hypothetical protein compare
BPHYT_RS07325 -1.4 -1.2 GntR family transcriptional regulator compare
BPHYT_RS32260 -1.4 -2.0 hypothetical protein compare
BPHYT_RS09160 -1.3 -4.0 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS01660 -1.3 -2.1 hypothetical protein compare
BPHYT_RS10645 -1.3 -1.4 cyanate hydratase compare
BPHYT_RS19320 -1.3 -4.2 glycine cleavage system protein T compare
BPHYT_RS19325 -1.3 -2.7 glycine cleavage system H protein compare
BPHYT_RS02685 -1.3 -6.5 cytochrome C oxidase subunit I compare
BPHYT_RS13605 -1.3 -1.1 tRNA-Pro compare
BPHYT_RS14275 -1.3 -2.0 hypothetical protein compare
BPHYT_RS26820 -1.2 -1.6 LysR family transcriptional regulator compare
BPHYT_RS22455 -1.2 -1.0 phosphonate ABC transporter substrate-binding protein compare
BPHYT_RS15305 -1.2 -5.6 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
BPHYT_RS12725 -1.2 -7.9 regulator compare
BPHYT_RS23350 -1.2 -1.8 NAD-dependent epimerase/dehydratase compare
BPHYT_RS29620 -1.2 -0.9 hypothetical protein compare
BPHYT_RS25135 -1.2 -1.8 hypothetical protein compare
BPHYT_RS30890 -1.2 -1.4 hypothetical protein compare
BPHYT_RS11075 -1.2 -2.4 membrane protein compare
BPHYT_RS22190 -1.2 -2.2 nucleoid-structuring protein H-NS compare
BPHYT_RS29855 -1.2 -1.0 protein-tyrosine-phosphatase compare
BPHYT_RS17050 -1.2 -1.7 hypothetical protein compare
BPHYT_RS12550 -1.1 -1.1 GTP-binding protein HflX compare
BPHYT_RS08125 -1.1 -6.2 ATPase compare
BPHYT_RS06530 -1.1 -1.5 membrane protein compare
BPHYT_RS20790 -1.1 -1.5 TetR family transcriptional regulator compare
BPHYT_RS20280 -1.1 -1.6 hypothetical protein compare
BPHYT_RS02595 -1.1 -1.1 sulfurtransferase compare
BPHYT_RS35945 -1.1 -2.1 response regulator receiver compare
BPHYT_RS02635 -1.1 -4.8 membrane protein compare
BPHYT_RS26570 -1.1 -0.9 5'-nucleotidase compare
BPHYT_RS33045 -1.1 -1.2 response regulator receiver protein compare
BPHYT_RS02100 -1.1 -1.3 AsnC family transcriptional regulator compare
BPHYT_RS09330 -1.1 -6.4 phytoene synthase compare
BPHYT_RS08945 -1.1 -3.5 hypothetical protein compare
BPHYT_RS32750 -1.1 -1.1 lipoprotein compare
BPHYT_RS30055 -1.1 -1.8 hypothetical protein compare
BPHYT_RS18590 -1.1 -0.8 hypothetical protein compare
BPHYT_RS03015 -1.1 -0.9 aldolase compare
BPHYT_RS04890 -1.1 -1.3 cobalamin biosynthesis protein CobD compare
BPHYT_RS10475 -1.1 -1.5 mammalian cell entry protein compare
BPHYT_RS16340 -1.1 -4.8 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS22215 -1.0 -1.7 hypothetical protein compare
BPHYT_RS25870 -1.0 -0.7 type III secretion system ATPase compare
BPHYT_RS26685 -1.0 -1.2 precorrin-8X methylmutase compare
BPHYT_RS23600 -1.0 -1.6 hypothetical protein compare
BPHYT_RS05020 -1.0 -4.0 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS00980 -1.0 -0.8 GCN5 family acetyltransferase compare
BPHYT_RS08950 -1.0 -4.6 aminotransferase compare


Specific Phenotypes

For 8 genes in this experiment

For nitrogen source Carnitine Hydrochloride in Burkholderia phytofirmans PsJN

For nitrogen source Carnitine Hydrochloride across organisms