Experiment set3IT071 for Burkholderia phytofirmans PsJN

Compare to:

Carnitine Hydrochloride nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS18785 +1.8 4.4 flagellar assembly protein FliH compare
BPHYT_RS18935 +1.7 7.8 flagellar biosynthesis regulator FlhF compare
BPHYT_RS18945 +1.6 8.7 flagellar biosynthesis protein FlhB compare
BPHYT_RS07255 +1.6 3.3 4-oxalocrotonate decarboxylase compare
BPHYT_RS18875 +1.5 8.1 flagellar basal body rod protein FlgF compare
BPHYT_RS22265 +1.5 1.9 hypothetical protein compare
BPHYT_RS14670 +1.5 2.2 hypothetical protein compare
BPHYT_RS36495 +1.5 3.2 peptidase compare
BPHYT_RS18900 +1.4 11.3 flagella basal body P-ring formation protein FlgA compare
BPHYT_RS15320 +1.4 3.1 hypothetical protein compare
BPHYT_RS18790 +1.4 9.6 ATP synthase compare
BPHYT_RS18895 +1.4 6.0 flagellar basal body rod protein FlgB compare
BPHYT_RS18795 +1.4 11.7 flagellar export protein FliJ compare
BPHYT_RS33030 +1.4 1.3 hypothetical protein compare
BPHYT_RS18890 +1.4 10.2 flagellar basal body rod protein FlgC compare
BPHYT_RS18885 +1.4 7.0 flagellar basal body rod modification protein FlgD compare
BPHYT_RS18860 +1.4 6.9 flagellar P-ring protein FlgI compare
BPHYT_RS18940 +1.4 9.0 flagellar biosynthesis protein FlhA compare
BPHYT_RS18835 +1.4 2.3 flagellar biosynthesis protein FliR compare
BPHYT_RS18925 +1.4 7.4 RNA polymerase sigma70 compare
BPHYT_RS26775 +1.3 1.8 chemotaxis protein CheB compare
BPHYT_RS18775 +1.3 9.6 flagellar M-ring protein FliF compare
BPHYT_RS14255 +1.3 10.6 ABC transporter compare
BPHYT_RS18800 +1.3 7.4 flagellar hook-length control protein compare
BPHYT_RS30415 +1.3 2.4 AraC family transcriptional regulator compare
BPHYT_RS18880 +1.3 9.0 flagellar hook protein FlgE compare
BPHYT_RS07760 +1.3 2.6 diguanylate phosphodiesterase compare
BPHYT_RS18830 +1.3 8.4 flagellar biosynthesis protein FliQ compare
BPHYT_RS24580 +1.3 1.6 hypothetical protein compare
BPHYT_RS14250 +1.2 5.8 glycosyl transferase compare
BPHYT_RS27570 +1.2 1.5 universal stress protein UspA compare
BPHYT_RS13245 +1.2 4.7 hypothetical protein compare
BPHYT_RS18780 +1.2 7.8 flagellar motor switch protein FliG compare
BPHYT_RS16335 +1.2 1.1 membrane protein compare
BPHYT_RS05290 +1.2 1.6 hypothetical protein compare
BPHYT_RS25080 +1.2 1.7 glycine/betaine ABC transporter substrate-binding protein compare
BPHYT_RS18825 +1.2 5.4 flagellar biosynthesis protein FliP compare
BPHYT_RS23030 +1.2 1.8 gluconate 2-dehydrogenase compare
BPHYT_RS23880 +1.2 1.9 sugar ABC transporter permease compare
BPHYT_RS18870 +1.1 4.6 flagellar basal body rod protein FlgG compare
BPHYT_RS26550 +1.1 1.2 Fis family transcriptional regulator compare
BPHYT_RS08715 +1.1 1.4 adenylyl-sulfate kinase compare
BPHYT_RS25845 +1.1 1.2 RND transporter MFP subunit compare
BPHYT_RS23445 +1.1 1.4 hexuronate transporter compare
BPHYT_RS23760 +1.1 2.3 phosphonate ABC transporter permease compare
BPHYT_RS11635 +1.1 1.3 RNA polymerase subunit sigma-24 compare
BPHYT_RS08525 +1.1 1.2 SAM-dependent methyltransferase compare
BPHYT_RS21870 +1.1 1.7 hypothetical protein compare
BPHYT_RS04220 +1.0 3.9 hypothetical protein compare
BPHYT_RS19890 +1.0 1.6 hypothetical protein compare
BPHYT_RS34650 +1.0 1.7 l-threonine 3-dehydrogenase compare
BPHYT_RS28350 +1.0 2.3 fatty acid desaturase compare
BPHYT_RS04370 +1.0 1.7 glycosyl transferase compare
BPHYT_RS24440 +1.0 3.1 type VI secretion protein compare
BPHYT_RS36400 +1.0 1.1 hypothetical protein compare
BPHYT_RS01795 +1.0 5.1 histidine kinase compare
BPHYT_RS05395 +1.0 1.4 hypothetical protein compare
BPHYT_RS08000 +1.0 1.3 antibiotic biosynthesis monooxygenase compare
BPHYT_RS18820 +1.0 1.5 flagellar biosynthesis protein FliO compare
BPHYT_RS33240 +1.0 2.3 membrane protein compare
BPHYT_RS02365 +1.0 1.5 hypothetical protein compare
BPHYT_RS25590 +1.0 3.0 FAD-dependent pyridine nucleotide-disulfide oxidoreductase compare
BPHYT_RS03965 +0.9 2.6 GDP-mannose mannosyl hydrolase compare
BPHYT_RS20905 +0.9 1.1 hypothetical protein compare
BPHYT_RS23860 +0.9 1.9 malonic semialdehyde reductase compare
BPHYT_RS09225 +0.9 4.0 LysR family transcriptional regulator compare
BPHYT_RS04400 +0.9 1.6 Crp/Fnr family transcriptional regulator compare
BPHYT_RS25055 +0.9 1.6 MFS transporter compare
BPHYT_RS26740 +0.9 1.9 hypothetical protein compare
BPHYT_RS10305 +0.9 1.5 hypothetical protein compare
BPHYT_RS27445 +0.9 2.3 hypothetical protein compare
BPHYT_RS31840 +0.9 2.4 anhydrase compare
BPHYT_RS26380 +0.9 1.9 cobalamin biosynthesis protein CobT compare
BPHYT_RS14205 +0.9 5.0 lytic transglycosylase compare
BPHYT_RS31260 +0.9 1.5 histidine kinase compare
BPHYT_RS18865 +0.9 1.7 flagellar L-ring protein FlgH compare
BPHYT_RS23705 +0.9 6.0 hypothetical protein compare
BPHYT_RS01790 +0.9 6.3 LuxR family transcriptional regulator compare
BPHYT_RS20940 +0.9 2.6 citrate synthase compare
BPHYT_RS22000 +0.9 0.9 hypothetical protein compare
BPHYT_RS13285 +0.9 2.7 amino acid ABC transporter ATP-binding protein compare
BPHYT_RS07385 +0.9 2.2 glycosyl transferase family 1 compare
BPHYT_RS30795 +0.9 1.2 short-chain dehydrogenase compare
BPHYT_RS26595 +0.8 3.1 carbonic anhydrase compare
BPHYT_RS16250 +0.8 1.0 N5-carboxyaminoimidazole ribonucleotide mutase compare
BPHYT_RS34765 +0.8 2.7 chemotaxis protein compare
BPHYT_RS05285 +0.8 1.4 hypothetical protein compare
BPHYT_RS28860 +0.8 0.8 haloacid dehalogenase compare
BPHYT_RS31015 +0.8 3.0 3-deoxy-manno-octulosonate cytidylyltransferase 2 compare
BPHYT_RS32250 +0.8 1.1 membrane protein compare
BPHYT_RS21725 +0.8 1.2 taurine ABC transporter substrate-binding protein compare
BPHYT_RS13115 +0.8 2.8 ABC transporter permease compare
BPHYT_RS18805 +0.8 3.0 flagellar basal body protein FliL compare
BPHYT_RS03720 +0.8 2.9 malonic semialdehyde reductase compare
BPHYT_RS30020 +0.8 2.6 arsenic transporter compare
BPHYT_RS28840 +0.8 1.4 oxidoreductase compare
BPHYT_RS10695 +0.8 1.4 aromatic-ring-hydroxylating dioxygenase subunit beta compare
BPHYT_RS06195 +0.8 1.4 membrane protein compare
BPHYT_RS08020 +0.8 2.1 hypothetical protein compare
BPHYT_RS22205 +0.8 2.3 hypothetical protein compare
BPHYT_RS08405 +0.8 1.1 hypothetical protein compare
BPHYT_RS04060 +0.8 1.7 glycosyl transferase compare
BPHYT_RS18855 +0.8 4.6 flagellar rod assembly protein FlgJ compare
BPHYT_RS21685 +0.8 1.7 cobalamin biosynthesis protein CobS compare
BPHYT_RS17805 +0.8 0.8 hypothetical protein compare
BPHYT_RS33690 +0.8 1.7 molybdate ABC transporter permease compare
BPHYT_RS09725 +0.8 2.2 exopolysaccharide biosynthesis protein compare
BPHYT_RS05235 +0.8 1.1 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase compare
BPHYT_RS06250 +0.8 1.9 pilus assembly protein PapD compare
BPHYT_RS02900 +0.8 2.6 ribosome hibernation promoting factor compare
BPHYT_RS33170 +0.8 1.4 acetyltransferase compare
BPHYT_RS12925 +0.8 0.9 exodeoxyribonuclease III compare
BPHYT_RS24630 +0.8 1.1 (2Fe-2S)-binding protein compare
BPHYT_RS27860 +0.8 1.7 membrane protein compare
BPHYT_RS20900 +0.8 1.9 phytanoyl-CoA dioxygenase compare
BPHYT_RS03265 +0.8 2.4 hypothetical protein compare
BPHYT_RS25015 +0.8 3.1 XRE family transcriptional regulator compare
BPHYT_RS31030 +0.7 2.0 tyrosine protein kinase compare
BPHYT_RS29850 +0.7 1.9 protein tyrosine kinase compare
BPHYT_RS02965 +0.7 1.7 membrane protein compare
BPHYT_RS16180 +0.7 0.7 TetR family transcriptional regulator compare
BPHYT_RS24175 +0.7 1.3 C4-dicarboxylate ABC transporter compare
BPHYT_RS23830 +0.7 1.2 acetyl-CoA hydrolase compare
BPHYT_RS11655 +0.7 1.3 chromosome partitioning protein ParB compare
BPHYT_RS34500 +0.7 1.5 hypothetical protein compare
BPHYT_RS23460 +0.7 0.8 AraC family transcriptional regulator compare
BPHYT_RS35120 +0.7 1.4 hypothetical protein compare
BPHYT_RS30830 +0.7 1.4 MFS transporter compare
BPHYT_RS24505 +0.7 1.8 glyoxalase compare
BPHYT_RS33135 +0.7 1.1 LysR family transcriptional regulator compare
BPHYT_RS34775 +0.7 2.7 diguanylate cyclase compare
BPHYT_RS25955 +0.7 1.5 transcriptional regulator compare
BPHYT_RS32150 +0.7 0.7 hypothetical protein compare
BPHYT_RS09895 +0.7 0.9 LysR family transcriptional regulator compare
BPHYT_RS23975 +0.7 1.9 peroxidase compare
BPHYT_RS15325 +0.7 1.6 ribonuclease PH compare
BPHYT_RS30120 +0.7 1.3 heavy metal transporter compare
BPHYT_RS28920 +0.7 1.3 cellulose synthase compare
BPHYT_RS09585 +0.7 1.1 hypothetical protein compare
BPHYT_RS28685 +0.7 1.9 GntR family transcriptional regulator compare
BPHYT_RS01625 +0.7 2.3 chemotaxis protein CheY compare
BPHYT_RS30160 +0.7 1.1 AraC family transcriptional regulator compare
BPHYT_RS23325 +0.7 2.1 ribonuclease compare
BPHYT_RS35090 +0.7 1.8 diaminopimelate decarboxylase compare
BPHYT_RS19025 +0.7 2.8 transcriptional regulator compare
BPHYT_RS14370 +0.7 1.2 ribonuclease III compare
BPHYT_RS23385 +0.7 1.3 group 1 glycosyl transferase compare
BPHYT_RS27330 +0.7 0.8 hypothetical protein compare
BPHYT_RS31855 +0.7 1.4 FAD-linked oxidase compare
BPHYT_RS26300 +0.7 0.9 ATP-dependent DNA ligase compare
BPHYT_RS31515 +0.7 1.4 agmatinase compare
BPHYT_RS12225 +0.7 2.0 carnitine dehydratase compare
BPHYT_RS07380 +0.7 1.7 membrane protein compare
BPHYT_RS31685 +0.7 1.4 D-isomer specific 2-hydroxyacid dehydrogenase compare
BPHYT_RS25625 +0.7 2.1 glutathione S-transferase compare
BPHYT_RS00270 +0.7 1.0 branched-chain amino acid ABC transporter compare
BPHYT_RS11685 +0.7 0.9 phasin family protein compare
BPHYT_RS26555 +0.7 0.9 multidrug MFS transporter compare
BPHYT_RS07705 +0.7 1.1 arginine succinyltransferase compare
BPHYT_RS03925 +0.7 1.8 LysR family transcriptional regulator compare
BPHYT_RS10430 +0.7 1.7 glycosyl transferase family 1 compare
BPHYT_RS26115 +0.7 1.8 polysaccharide deacetylase compare
BPHYT_RS10360 +0.7 1.5 MFS transporter compare
BPHYT_RS24740 +0.6 1.0 RNA polymerase subunit sigma-24 compare
BPHYT_RS36600 +0.6 1.2 lytic transglycosylase compare
BPHYT_RS34850 +0.6 1.2 acylphosphatase compare
BPHYT_RS03455 +0.6 1.9 paraquat-inducible protein A compare
BPHYT_RS28745 +0.6 1.5 2-keto-4-pentenoate hydratase compare
BPHYT_RS23535 +0.6 0.8 ABC transporter substrate-binding protein compare
BPHYT_RS35300 +0.6 1.9 flavin reductase compare
BPHYT_RS04910 +0.6 1.0 phenylacetic acid degradation protein compare
BPHYT_RS30185 +0.6 1.0 DNA-directed RNA polymerase subunit alpha compare
BPHYT_RS04285 +0.6 1.4 rhamnosyltransferase compare
BPHYT_RS27720 +0.6 0.7 hypothetical protein compare
BPHYT_RS36230 +0.6 1.2 hypothetical protein compare
BPHYT_RS08825 +0.6 0.6 tartronate semialdehyde reductase compare
BPHYT_RS23870 +0.6 1.9 LacI family transcription regulator compare
BPHYT_RS05440 +0.6 2.4 hypothetical protein compare
BPHYT_RS24115 +0.6 0.7 epimerase compare
BPHYT_RS09565 +0.6 1.4 acetyl-CoA acetyltransferase compare
BPHYT_RS31910 +0.6 1.3 hypothetical protein compare
BPHYT_RS21030 +0.6 1.5 ABC transporter ATP-binding protein compare
BPHYT_RS25075 +0.6 0.4 AraC family transcriptional regulator compare
BPHYT_RS11000 +0.6 1.7 glutathione S-transferase compare
BPHYT_RS01630 +0.6 1.8 ATP-dependent protease ATPase subunit HslU compare
BPHYT_RS31160 +0.6 1.3 GCN5 family acetyltransferase compare
BPHYT_RS22865 +0.6 2.1 ATPase compare
BPHYT_RS29475 +0.6 1.7 carbon-phosphorus lyase complex subunit PhnJ compare
BPHYT_RS08995 +0.6 0.9 hypothetical protein compare
BPHYT_RS24275 +0.6 2.2 alpha-ketoglutarate decarboxylase compare
BPHYT_RS26925 +0.6 1.5 NIPSNAP family containing protein compare
BPHYT_RS28305 +0.6 1.1 protein tyrosine phosphatase compare
BPHYT_RS09545 +0.6 1.6 peptide methionine sulfoxide reductase compare
BPHYT_RS23495 +0.6 2.1 thioredoxin reductase compare
BPHYT_RS19650 +0.6 2.7 general secretion pathway protein N compare
BPHYT_RS25240 +0.6 1.5 choline-sulfatase compare
BPHYT_RS11125 +0.6 0.8 alkylhydroperoxidase compare
BPHYT_RS35660 +0.6 1.9 membrane protein compare
BPHYT_RS18810 +0.6 3.3 flagellar motor switch protein FliM compare
BPHYT_RS19625 +0.6 2.9 general secretion pathway protein I compare


Specific Phenotypes

For 8 genes in this experiment

For nitrogen source Carnitine Hydrochloride in Burkholderia phytofirmans PsJN

For nitrogen source Carnitine Hydrochloride across organisms