Experiment set3IT070 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Nalidixic acid sodium salt 0.004 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -5.4 -6.3 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_5527 -5.0 -3.5 Cold shock protein CspC compare
Pf6N2E2_3264 -5.0 -4.2 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_4352 -4.9 -4.7 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_2825 -4.5 -4.4 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_3168 -4.4 -10.5 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) conserved
Pf6N2E2_3258 -4.3 -5.9 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_2823 -4.3 -5.8 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_3460 -4.2 -2.9 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_5219 -4.2 -9.7 FIG140336: TPR domain protein compare
Pf6N2E2_2824 -4.1 -11.5 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_2753 -4.1 -4.9 HtrA protease/chaperone protein compare
Pf6N2E2_3666 -4.1 -5.2 InaA protein compare
Pf6N2E2_3257 -4.1 -4.9 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_3835 -4.1 -4.7 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_2261 -4.0 -8.5 VacJ-like lipoprotein precursor compare
Pf6N2E2_5534 -3.8 -6.6 FIG000859: hypothetical protein YebC compare
Pf6N2E2_5430 -3.7 -9.3 Transglycosylase, Slt family compare
Pf6N2E2_3461 -3.4 -1.9 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_2646 -3.3 -2.5 FIG00953416: hypothetical protein compare
Pf6N2E2_4072 -3.3 -7.2 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_5014 -3.3 -1.6 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_3060 -3.2 -3.0 Outer membrane protein H precursor compare
Pf6N2E2_4075 -3.2 -6.9 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_5178 -3.2 -3.6 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_4362 -3.1 -5.0 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_5340 -3.0 -6.7 Stringent starvation protein A compare
Pf6N2E2_5316 -3.0 -3.7 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_4743 -2.8 -1.4 hypothetical protein compare
Pf6N2E2_5727 -2.8 -6.2 FIG00955360: hypothetical protein compare
Pf6N2E2_1141 -2.8 -2.9 Lipid-A-disaccharide synthase (EC 2.4.1.182) compare
Pf6N2E2_1211 -2.8 -2.3 Lactoylglutathione lyase compare
Pf6N2E2_1283 -2.7 -2.2 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_4773 -2.7 -1.6 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_5987 -2.7 -7.3 OmpA family protein compare
Pf6N2E2_3260 -2.6 -6.1 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_4187 -2.6 -4.7 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2487 -2.5 -1.5 FIG00956090: hypothetical protein compare
Pf6N2E2_5006 -2.5 -8.4 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_5406 -2.5 -3.2 FIG00958224: hypothetical protein compare
Pf6N2E2_4417 -2.5 -4.5 Protein of unknown function DUF484 compare
Pf6N2E2_2217 -2.4 -4.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_464 -2.3 -2.2 Sensory histidine kinase QseC compare
Pf6N2E2_4273 -2.3 -6.3 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_5183 -2.3 -10.5 Paraquat-inducible protein B compare
Pf6N2E2_3039 -2.2 -6.8 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_4153 -2.2 -2.5 Sensory box histidine kinase compare
Pf6N2E2_3770 -2.1 -3.0 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_987 -2.1 -2.5 hypothetical protein compare
Pf6N2E2_463 -2.0 -6.1 Transcriptional regulatory protein RstA compare
Pf6N2E2_4416 -2.0 -2.8 Tyrosine recombinase XerC compare
Pf6N2E2_5001 -2.0 -2.1 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_2218 -2.0 -4.2 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_2973 -2.0 -3.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5780 -1.9 -7.2 Periplasmic protease compare
Pf6N2E2_2574 -1.9 -1.9 Flagellar synthesis regulator FleN compare
Pf6N2E2_2992 -1.9 -4.0 Regulatory protein RecX compare
Pf6N2E2_5181 -1.8 -8.7 Paraquat-inducible protein A compare
Pf6N2E2_6058 -1.8 -5.2 FIG139976: hypothetical protein compare
Pf6N2E2_1391 -1.7 -2.0 DNA-binding response regulator, LuxR family compare
Pf6N2E2_3062 -1.7 -4.1 Membrane-associated zinc metalloprotease compare
Pf6N2E2_5182 -1.7 -5.1 Paraquat-inducible protein A compare
Pf6N2E2_865 -1.7 -2.1 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_5171 -1.7 -10.5 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_3833 -1.6 -3.2 hypothetical protein compare
Pf6N2E2_1116 -1.6 -1.5 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_622 -1.6 -4.5 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_6057 -1.6 -3.3 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_74 -1.6 -2.5 DedD protein compare
Pf6N2E2_3040 -1.5 -4.2 5-nucleotidase SurE (EC 3.1.3.5) compare
Pf6N2E2_158 -1.5 -6.8 Endonuclease I precursor (EC 3.1.21.1) conserved
Pf6N2E2_311 -1.4 -3.0 hypothetical protein compare
Pf6N2E2_3270 -1.4 -3.9 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_3667 -1.4 -1.5 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_2152 -1.4 -2.2 hypothetical protein compare
Pf6N2E2_5536 -1.4 -1.6 Holliday junction DNA helicase RuvA compare
Pf6N2E2_5766 -1.4 -1.6 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_4074 -1.4 -7.9 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_5160 -1.4 -2.2 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_3761 -1.4 -10.4 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_1040 -1.3 -1.4 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_3095 -1.3 -1.2 hypothetical protein compare
Pf6N2E2_1694 -1.3 -1.2 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_1445 -1.3 -2.4 Glutathione S-transferase compare
Pf6N2E2_620 -1.3 -5.1 BatD compare
Pf6N2E2_4205 -1.3 -2.8 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_621 -1.3 -4.6 TPR domain protein in aerotolerance operon compare
Pf6N2E2_3782 -1.2 -2.6 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_1784 -1.2 -1.6 Methyl-accepting chemotaxis protein compare
Pf6N2E2_624 -1.2 -4.7 hypothetical protein PA3071 compare
Pf6N2E2_1502 -1.2 -1.3 Two-component system regulatory protein compare
Pf6N2E2_6085 -1.2 -2.3 Aha1 domain superfamily compare
Pf6N2E2_4673 -1.2 -2.2 ATP-dependent 23S rRNA helicase DbpA compare
Pf6N2E2_5640 -1.2 -1.8 FIG00955597: hypothetical protein compare
Pf6N2E2_1303 -1.2 -1.8 TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter compare
Pf6N2E2_1339 -1.2 -1.7 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_2471 -1.2 -5.8 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_5794 -1.2 -1.9 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_3373 -1.2 -2.0 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_2286 -1.1 -2.0 FIG00953287: hypothetical protein compare
Pf6N2E2_5156 -1.1 -2.6 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_2313 -1.1 -2.0 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_2536 -1.1 -1.3 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf6N2E2_2772 -1.1 -5.1 Uracil-DNA glycosylase, family 1 conserved
Pf6N2E2_4517 -1.1 -3.1 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) compare
Pf6N2E2_5679 -1.1 -3.6 hypothetical protein compare
Pf6N2E2_2640 -1.1 -1.3 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_5076 -1.1 -4.8 DNA repair protein RadA compare
Pf6N2E2_1325 -1.1 -2.3 FIG00954773: hypothetical protein compare
Pf6N2E2_2755 -1.1 -1.5 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_1152 -1.1 -3.4 hypothetical protein compare
Pf6N2E2_2068 -1.1 -5.1 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) compare
Pf6N2E2_5845 -1.1 -4.1 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_5088 -1.1 -1.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1545 -1.1 -2.6 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_4624 -1.0 -1.0 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_5312 -1.0 -2.0 FIG00964214: hypothetical protein compare
Pf6N2E2_1315 -1.0 -0.9 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
Pf6N2E2_2938 -1.0 -3.3 Outer membrane lipoprotein compare
Pf6N2E2_3856 -1.0 -5.4 Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) compare
Pf6N2E2_3337 -1.0 -5.0 PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69) compare
Pf6N2E2_698 -1.0 -1.6 Heme d1 biosynthesis protein NirH compare
Pf6N2E2_623 -1.0 -0.9 FIG00954674: hypothetical protein compare
Pf6N2E2_1691 -1.0 -0.9 hypothetical protein compare
Pf6N2E2_2827 -1.0 -1.4 hypothetical protein compare
Pf6N2E2_1997 -1.0 -2.1 FIG00956406: hypothetical protein compare
Pf6N2E2_2318 -1.0 -4.8 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_4797 -1.0 -1.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_3504 -1.0 -6.4 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_3261 -1.0 -2.9 hypothetical protein compare
Pf6N2E2_5375 -1.0 -3.2 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_3834 -1.0 -2.9 Lipoprotein NlpD compare
Pf6N2E2_3370 -1.0 -6.4 DNA repair protein RecN compare
Pf6N2E2_1966 -1.0 -2.0 SAM-dependent methyltransferases compare
Pf6N2E2_4218 -1.0 -4.9 hypothetical protein compare
Pf6N2E2_625 -1.0 -3.0 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_248 -1.0 -4.2 hypothetical protein compare
Pf6N2E2_2699 -1.0 -4.9 Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO compare
Pf6N2E2_5768 -0.9 -1.8 DNA recombination-dependent growth factor C compare
Pf6N2E2_3841 -0.9 -4.7 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_5158 -0.9 -3.1 FIG00954153: hypothetical protein compare
Pf6N2E2_4545 -0.9 -1.5 hypothetical protein compare
Pf6N2E2_4397 -0.9 -2.7 Xanthine phosphoribosyltransferase (EC 2.4.2.22) compare
Pf6N2E2_529 -0.9 -2.3 FIG00954439: hypothetical protein compare
Pf6N2E2_4162 -0.9 -1.7 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_5610 -0.9 -3.8 two-component system sensor protein compare
Pf6N2E2_2387 -0.9 -3.2 Ribonuclease E inhibitor RraA compare
Pf6N2E2_1022 -0.9 -0.8 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf6N2E2_2098 -0.9 -2.3 heme uptake regulator compare
Pf6N2E2_4071 -0.9 -2.4 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_3842 -0.9 -2.3 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_64 -0.9 -2.4 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_4169 -0.9 -3.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1089 -0.9 -1.5 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_4272 -0.9 -2.9 putative membrane protein compare
Pf6N2E2_861 -0.9 -2.9 Transcriptional regulator, LysR family compare
Pf6N2E2_2674 -0.9 -0.8 FIG00953856: hypothetical protein compare
Pf6N2E2_4531 -0.8 -1.3 hypothetical protein compare
Pf6N2E2_122 -0.8 -0.9 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_2219 -0.8 -0.7 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_3849 -0.8 -2.2 FIG00954739: hypothetical protein compare
Pf6N2E2_547 -0.8 -1.9 Phophatidylinositol-4-phosphate 5-kinase (EC 2.7.1.68) compare
Pf6N2E2_4694 -0.8 -2.3 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_1343 -0.8 -1.6 Transcriptional regulator compare
Pf6N2E2_525 -0.8 -2.0 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_5499 -0.8 -0.8 hypothetical protein compare
Pf6N2E2_3642 -0.8 -3.6 lipoprotein, putative compare
Pf6N2E2_5243 -0.8 -1.4 hypothetical protein compare
Pf6N2E2_168 -0.8 -3.1 hypothetical protein compare
Pf6N2E2_1493 -0.8 -2.7 ABC-type polar amino acid transport system, ATPase component compare
Pf6N2E2_1812 -0.8 -1.4 peptide ABC transporter, ATP-binding protein compare
Pf6N2E2_1173 -0.8 -1.6 hypothetical protein compare
Pf6N2E2_2474 -0.8 -3.9 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_5749 -0.8 -1.8 hypothetical protein compare
Pf6N2E2_5862 -0.8 -1.1 Lipoprotein, putative compare
Pf6N2E2_1392 -0.8 -2.1 sensor histidine kinase compare
Pf6N2E2_5345 -0.8 -4.0 LppC putative lipoprotein compare
Pf6N2E2_1287 -0.8 -2.0 Mobile element protein compare
Pf6N2E2_893 -0.8 -1.4 hypothetical protein compare
Pf6N2E2_477 -0.8 -1.6 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf6N2E2_5623 -0.8 -2.1 YciL protein compare
Pf6N2E2_159 -0.8 -1.5 DNA damage resistance protein (from data) compare
Pf6N2E2_4607 -0.8 -1.9 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR compare
Pf6N2E2_2041 -0.8 -2.1 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) compare
Pf6N2E2_1435 -0.8 -1.6 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase compare
Pf6N2E2_3696 -0.8 -0.8 hypothetical protein compare
Pf6N2E2_4609 -0.8 -2.2 UPF0301 protein YqgE compare
Pf6N2E2_2067 -0.8 -6.5 cis/trans isomerase compare
Pf6N2E2_384 -0.8 -1.5 Glycine cleavage system transcriptional activator compare
Pf6N2E2_1385 -0.8 -1.4 FIG00956261: hypothetical protein compare
Pf6N2E2_1824 -0.8 -1.2 hypothetical protein compare
Pf6N2E2_4372 -0.8 -2.6 FIG00460773: hypothetical protein compare
Pf6N2E2_4057 -0.8 -0.6 lipoprotein, putative compare
Pf6N2E2_1782 -0.7 -1.5 STAS domain protein compare
Pf6N2E2_229 -0.7 -2.0 Putative fumarylacetoacetate (FAA) hydrolase compare
Pf6N2E2_5052 -0.7 -1.3 Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family compare
Pf6N2E2_5919 -0.7 -1.4 Flp pilus assembly protein TadD, contains TPR repeats compare
Pf6N2E2_5155 -0.7 -1.6 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_1656 -0.7 -1.1 hypothetical protein compare
Pf6N2E2_927 -0.7 -1.6 (AJ250023) putative polyketide synthase compare


Specific Phenotypes

For 7 genes in this experiment

For stress Nalidixic acid sodium salt in Pseudomonas fluorescens FW300-N2E2

For stress Nalidixic acid sodium salt across organisms