Experiment set3IT070 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Fusidic acid sodium salt 0.125 mg/ml

200 most important genes:

  gene name fitness t score description  
AO353_02940 -4.3 -4.2 DNA-binding protein compare
AO353_17300 -3.5 -5.3 antibiotic transporter compare
AO353_13160 -3.4 -2.4 membrane protease HflC compare
AO353_01410 -3.3 -3.9 ribonuclease E compare
AO353_03590 -3.2 -3.1 crossover junction endodeoxyribonuclease RuvC compare
AO353_17295 -3.2 -17.4 multidrug transporter compare
AO353_03715 -3.1 -3.0 H-NS histone compare
AO353_08245 -3.0 -3.6 cell division ATP-binding protein FtsE compare
AO353_20175 -3.0 -2.9 ATP-dependent Clp protease proteolytic subunit compare
AO353_17290 -3.0 -6.3 multidrug transporter compare
AO353_04565 -2.9 -5.8 nucleoid-associated protein compare
AO353_16495 -2.8 -6.8 zinc metallopeptidase RseP compare
AO353_20185 -2.7 -6.5 DNA-binding protein compare
AO353_09320 -2.6 -9.5 ATP-dependent DNA helicase RecG compare
AO353_15905 -2.6 -6.3 outer membrane protein assembly factor BamB compare
AO353_08350 -2.5 -8.4 hypothetical protein compare
AO353_04490 -2.5 -10.3 murein transglycosylase compare
AO353_15270 -2.5 -5.1 phospholipid-binding protein compare
AO353_09315 -2.5 -9.9 LysR family transcriptional regulator compare
AO353_10455 -2.5 -2.4 tRNA modification GTPase MnmE compare
AO353_07315 -2.4 -2.9 rRNA methyltransferase compare
AO353_07610 -2.4 -2.0 hypothetical protein compare
AO353_20815 -2.4 -3.9 LacI family transcriptional regulator compare
AO353_18225 -2.4 -9.4 ATP-dependent RNA helicase HrpA conserved
AO353_14775 -2.4 -5.2 hypothetical protein compare
AO353_10930 -2.3 -7.7 DNA polymerase I compare
AO353_09275 -2.3 -3.7 DNA-directed RNA polymerase subunit omega compare
AO353_06455 -2.2 -2.8 D-alanyl-D-alanine carboxypeptidase compare
AO353_22685 -2.2 -3.5 peroxidase compare
AO353_27650 -2.2 -4.5 cell division protein FtsK compare
AO353_12110 -2.1 -7.7 peptidase M23 compare
AO353_10055 -2.1 -10.7 DNA helicase II compare
AO353_13155 -2.0 -4.7 hypothetical protein compare
AO353_03720 -2.0 -10.5 exonuclease I compare
AO353_02440 -2.0 -10.8 peptidase S41 compare
AO353_20170 -2.0 -4.7 trigger factor compare
AO353_12105 -2.0 -5.3 peptidase S41 compare
AO353_14990 -2.0 -2.4 hypothetical protein compare
AO353_17865 -2.0 -9.7 hydroxyacid dehydrogenase conserved
AO353_15285 -2.0 -10.0 hypothetical protein compare
AO353_17640 -2.0 -2.6 serine peptidase compare
AO353_23715 -1.9 -7.2 hypothetical protein compare
AO353_13225 -1.9 -3.7 50S ribosomal protein L9 compare
AO353_00495 -1.9 -2.5 DNA topoisomerase I compare
AO353_05145 -1.9 -5.3 ABC transporter permease compare
AO353_08240 -1.8 -12.2 cell division protein FtsX compare
AO353_17645 -1.8 -9.3 peptidase M48 compare
AO353_08265 -1.8 -5.6 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_23720 -1.7 -3.9 BatB protein compare
AO353_19505 -1.7 -3.5 FAD-dependent oxidoreductase compare
AO353_09040 -1.7 -2.0 diaminopimelate epimerase compare
AO353_13130 -1.7 -2.3 N-acetylmuramoyl-L-alanine amidase compare
AO353_26115 -1.7 -1.4 hypothetical protein compare
AO353_15260 -1.7 -5.4 stringent starvation protein A compare
AO353_05690 -1.7 -3.7 SsrA-binding protein compare
AO353_12790 -1.6 -1.9 hypothetical protein compare
AO353_19810 -1.6 -2.7 filamentous hemagglutinin compare
AO353_20695 -1.6 -5.2 O-succinylhomoserine sulfhydrylase compare
AO353_09915 -1.5 -7.3 long-chain acyl-CoA thioester hydrolase compare
AO353_23710 -1.5 -4.5 protein BatD compare
AO353_20680 -1.5 -3.2 cell division protein compare
AO353_09745 -1.5 -2.0 hypothetical protein compare
AO353_12510 -1.5 -9.1 cell division protein compare
AO353_01220 -1.5 -2.3 hypothetical protein compare
AO353_15290 -1.5 -5.5 methyltransferase compare
AO353_21465 -1.5 -1.9 cation:proton antiporter compare
AO353_09720 -1.5 -1.9 hypothetical protein compare
AO353_26945 -1.4 -2.3 transcriptional regulator compare
AO353_00825 -1.4 -3.2 porin compare
AO353_12115 -1.4 -2.3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_09030 -1.4 -1.1 iron donor protein CyaY compare
AO353_03700 -1.4 -7.3 hypothetical protein compare
AO353_23590 -1.4 -1.8 ArsR family transcriptional regulator compare
AO353_03585 -1.4 -2.4 ATP-dependent DNA helicase RuvA compare
AO353_13405 -1.4 -2.8 urease accessory protein UreF compare
AO353_06415 -1.4 -3.7 hypothetical protein compare
AO353_01685 -1.4 -1.8 hypothetical protein compare
AO353_05135 -1.4 -6.5 toluene tolerance protein compare
AO353_14740 -1.4 -3.0 GTP-binding protein compare
AO353_08255 -1.4 -7.7 peptidase M16 compare
AO353_03580 -1.4 -3.1 ATP-dependent DNA helicase RuvB compare
AO353_10630 -1.4 -3.9 16S rRNA methyltransferase compare
AO353_26390 -1.4 -1.8 glyoxalase compare
AO353_00330 -1.4 -6.5 hypothetical protein compare
AO353_15280 -1.4 -4.3 hypothetical protein compare
AO353_18630 -1.4 -5.7 beta-ketoacyl-ACP synthase compare
AO353_03805 -1.4 -2.3 C4-dicarboxylate ABC transporter compare
AO353_20700 -1.3 -3.5 oxidoreductase compare
AO353_18325 -1.3 -2.7 hypothetical protein compare
AO353_20910 -1.3 -4.6 MerR family transcriptional regulator compare
AO353_06050 -1.3 -5.3 exodeoxyribonuclease V subunit gamma compare
AO353_05415 -1.3 -1.5 hypothetical protein compare
AO353_09250 -1.3 -2.8 exodeoxyribonuclease III compare
AO353_25815 -1.3 -3.5 hypothetical protein compare
AO353_28555 -1.3 -1.9 LysR family transcriptional regulator compare
AO353_29280 -1.2 -2.7 hypothetical protein compare
AO353_09600 -1.2 -3.9 hypothetical protein compare
AO353_14550 -1.2 -8.2 paraquat-inducible protein A compare
AO353_04970 -1.2 -2.7 cell division protein DedD compare
AO353_15900 -1.2 -2.0 GTP-binding protein compare
AO353_23735 -1.2 -5.1 AAA family ATPase compare
AO353_14560 -1.2 -8.7 mammalian cell entry protein compare
AO353_23730 -1.2 -2.3 hypothetical protein compare
AO353_03615 -1.2 -2.2 cold-shock protein compare
AO353_14480 -1.2 -6.2 hypothetical protein compare
AO353_05150 -1.2 -3.4 ABC transporter ATP-binding protein compare
AO353_21640 -1.1 -1.6 cobalt transporter compare
AO353_23785 -1.1 -1.2 hypothetical protein compare
AO353_03640 -1.1 -4.1 nucleotide-binding protein compare
AO353_07515 -1.1 -1.0 transporter compare
AO353_14055 -1.1 -7.1 ATP-dependent protease compare
AO353_25015 -1.1 -2.5 polyketide cyclase compare
AO353_27855 -1.1 -2.1 MarR family transcriptional regulator compare
AO353_19750 -1.1 -1.9 diaminopimelate epimerase compare
AO353_16915 -1.1 -6.4 hypothetical protein compare
AO353_20510 -1.1 -2.0 amidase compare
AO353_26520 -1.1 -2.3 TetR family transcriptional regulator compare
AO353_05740 -1.1 -2.7 hypothetical protein compare
AO353_13150 -1.1 -5.5 GTPase HflX compare
AO353_05725 -1.1 -3.8 tmRNA compare
AO353_21440 -1.1 -2.7 hypothetical protein compare
AO353_11055 -1.1 -5.4 Holliday junction resolvase compare
AO353_18780 -1.1 -4.9 cobyrinic acid a,c-diamide synthase compare
AO353_27010 -1.1 -1.9 alpha-ketoglutarate-dependent dioxygenase compare
AO353_28395 -1.1 -2.9 haloacid dehalogenase compare
AO353_05130 -1.1 -1.4 anti-anti-sigma factor compare
AO353_18170 -1.1 -4.4 aspartyl beta-hydroxylase compare
AO353_20200 -1.1 -3.3 peptidylprolyl isomerase compare
AO353_13395 -1.1 -2.2 protein hupE compare
AO353_22700 -1.1 -1.5 LexA family transcriptional regulator compare
AO353_06040 -1.1 -2.7 exodeoxyribonuclease V subunit alpha compare
AO353_01215 -1.1 -5.6 hypothetical protein compare
AO353_23495 -1.1 -2.2 SAM-dependent methyltransferase compare
AO353_02280 -1.1 -1.1 DNA mismatch repair protein MutS compare
AO353_07445 -1.1 -1.3 pyrroloquinoline quinone biosynthesis protein PqqD compare
AO353_06140 -1.1 -5.1 MFS transporter conserved
AO353_15480 -1.0 -1.5 hypothetical protein compare
AO353_17945 -1.0 -1.5 cyclic nucleotide-binding protein compare
AO353_13085 -1.0 -2.2 histidine kinase compare
AO353_17880 -1.0 -3.4 hypothetical protein compare
AO353_24340 -1.0 -1.6 TetR family transcriptional regulator compare
AO353_15265 -1.0 -3.6 peptidase compare
AO353_08775 -1.0 -1.2 cell division protein ZapA compare
AO353_14475 -1.0 -7.7 penicillin-binding protein 1B compare
AO353_15015 -1.0 -7.0 adhesin compare
AO353_13040 -1.0 -5.0 esterase compare
AO353_27155 -1.0 -1.7 hypothetical protein compare
AO353_14420 -1.0 -2.4 molecular chaperone DnaK compare
AO353_06795 -1.0 -1.3 Isochorismatase compare
AO353_23725 -1.0 -3.4 hypothetical protein compare
AO353_11045 -1.0 -6.9 hypothetical protein compare
AO353_14555 -1.0 -6.2 paraquat-inducible protein A compare
AO353_09890 -1.0 -3.2 phosphate ABC transporter ATP-binding protein compare
AO353_08260 -1.0 -5.9 peptidase M16 compare
AO353_16040 -1.0 -1.2 hypothetical protein compare
AO353_07495 -1.0 -7.0 acyl-CoA dehydrogenase compare
AO353_17955 -0.9 -3.5 MFS transporter compare
AO353_22115 -0.9 -1.9 peptidylprolyl isomerase compare
AO353_18925 -0.9 -2.0 ATPase compare
AO353_23935 -0.9 -3.3 hypothetical protein compare
AO353_02975 -0.9 -2.3 aspartate kinase compare
AO353_24135 -0.9 -2.0 hypothetical protein compare
AO353_25990 -0.9 -3.2 aspartyl beta-hydroxylase compare
AO353_17820 -0.9 -2.4 5-carboxymethyl-2-hydroxymuconate isomerase compare
AO353_13930 -0.9 -4.0 Killer protein compare
AO353_06250 -0.9 -2.6 GNAT family acetyltransferase compare
AO353_24740 -0.9 -2.2 hypothetical protein compare
AO353_01135 -0.9 -1.1 enoyl-CoA hydratase compare
AO353_11920 -0.9 -1.5 hypothetical protein compare
AO353_00115 -0.9 -1.7 hypothetical protein compare
AO353_07880 -0.9 -4.4 metal-dependent hydrolase compare
AO353_19020 -0.9 -2.1 hypothetical protein compare
AO353_26870 -0.9 -2.0 AP endonuclease compare
AO353_05140 -0.9 -4.1 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_12895 -0.9 -3.5 lipopolysaccharide kinase compare
AO353_24275 -0.9 -1.8 transcriptional regulator compare
AO353_24915 -0.9 -1.2 hypothetical protein compare
AO353_25925 -0.9 -1.3 hypothetical protein compare
AO353_23575 -0.9 -3.4 hypothetical protein compare
AO353_00725 -0.9 -3.4 GntR family transcriptional regulator compare
AO353_21835 -0.9 -4.5 excinuclease ABC subunit C compare
AO353_16825 -0.9 -3.2 hypothetical protein compare
AO353_02190 -0.8 -5.5 hypothetical protein compare
AO353_26080 -0.8 -1.1 hypothetical protein compare
AO353_22015 -0.8 -3.3 short-chain dehydrogenase compare
AO353_08725 -0.8 -3.5 aminotransferase DegT compare
AO353_13980 -0.8 -3.2 DNA repair protein RadA compare
AO353_22800 -0.8 -1.5 sulfite reductase compare
AO353_02600 -0.8 -1.7 alpha-ribazole phosphatase compare
AO353_24605 -0.8 -1.8 hypothetical protein compare
AO353_13415 -0.8 -2.9 TetR family transcriptional regulator compare
AO353_16765 -0.8 -1.8 hypothetical protein compare
AO353_02520 -0.8 -1.3 sodium transporter compare
AO353_14225 -0.8 -4.4 laccase compare
AO353_23165 -0.8 -2.0 cupin compare
AO353_16740 -0.8 -1.8 phage tail protein compare
AO353_04520 -0.8 -3.1 elongation factor 4 compare
AO353_11165 -0.8 -4.5 hypothetical protein compare
AO353_08640 -0.8 -1.9 hypothetical protein compare
AO353_20565 -0.8 -1.0 tRNA-Ala compare


Specific Phenotypes

For 27 genes in this experiment

For stress Fusidic acid sodium salt in Pseudomonas fluorescens FW300-N2E3

For stress Fusidic acid sodium salt across organisms