Experiment set3IT070 for Burkholderia phytofirmans PsJN

Compare to:

L-Citrulline nitrogen source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS16270 -7.9 -5.2 phosphoglycerate kinase compare
BPHYT_RS13705 -7.3 -5.0 chorismate synthase compare
BPHYT_RS17680 -7.2 -4.8 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS06555 -7.2 -5.0 ketol-acid reductoisomerase compare
BPHYT_RS17400 -7.2 -5.0 anthranilate phosphoribosyltransferase compare
BPHYT_RS17690 -7.2 -9.8 imidazole glycerol phosphate synthase compare
BPHYT_RS09500 -7.1 -4.9 glucose-6-phosphate isomerase compare
BPHYT_RS17675 -7.0 -2.4 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS16245 -6.7 -4.6 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS33880 -6.7 -8.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS14895 -6.6 -4.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS14915 -6.5 -6.4 phosphoserine aminotransferase compare
BPHYT_RS33835 -6.4 -8.8 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS33915 -6.3 -8.7 isopropylmalate isomerase compare
BPHYT_RS17715 -6.3 -8.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS17890 -6.1 -3.5 shikimate kinase compare
BPHYT_RS03150 -6.0 -13.9 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS15920 -5.9 -11.3 argininosuccinate synthase compare
BPHYT_RS17685 -5.7 -8.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS14845 -5.7 -4.9 cysteine synthase compare
BPHYT_RS33645 -5.6 -5.5 homoserine kinase compare
BPHYT_RS04740 -5.6 -6.7 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS04955 -5.6 -1.9 methionyl-tRNA synthetase compare
BPHYT_RS18320 -5.6 -9.6 orotate phosphoribosyltransferase compare
BPHYT_RS08955 -5.5 -3.8 homoserine dehydrogenase compare
BPHYT_RS17855 -5.5 -16.0 glutamate synthase compare
BPHYT_RS06900 -5.5 -3.8 aspartate aminotransferase compare
BPHYT_RS09515 -5.5 -3.8 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS33865 -5.5 -8.3 tryptophan synthase alpha chain compare
BPHYT_RS14910 -5.4 -13.3 chorismate mutase compare
BPHYT_RS33900 -5.3 -10.1 3-isopropylmalate dehydrogenase compare
BPHYT_RS04965 -5.3 -8.8 ATP-binding protein compare
BPHYT_RS05010 -5.3 -6.3 RpiR family transcriptional regulator compare
BPHYT_RS01590 -5.3 -7.4 methionine biosynthesis protein MetW compare
BPHYT_RS10100 -5.2 -5.0 dihydroxy-acid dehydratase compare
BPHYT_RS17405 -5.1 -1.7 indole-3-glycerol phosphate synthase compare
BPHYT_RS04725 -5.1 -6.5 sulfite reductase compare
BPHYT_RS12530 -5.0 -4.5 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS17885 -5.0 -7.3 3-dehydroquinate synthase compare
BPHYT_RS16675 -4.9 -3.4 dihydroorotase compare
BPHYT_RS17670 -4.9 -4.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS16840 -4.9 -3.4 transketolase compare
BPHYT_RS17390 -4.8 -12.7 anthranilate synthase subunit I compare
BPHYT_RS06545 -4.7 -11.0 acetolactate synthase compare
BPHYT_RS05225 -4.7 -8.3 phosphoenolpyruvate carboxylase compare
BPHYT_RS14190 -4.7 -10.4 carbamoyl phosphate synthase large subunit compare
BPHYT_RS33875 -4.6 -6.1 tryptophan synthase subunit alpha compare
BPHYT_RS16905 -4.5 -5.5 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS16255 -4.4 -3.1 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS16735 -4.4 -7.3 phosphogluconate dehydratase compare
BPHYT_RS03640 -4.4 -4.3 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS16835 -4.4 -7.9 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS05960 -4.4 -7.2 endoribonuclease L-PSP compare
BPHYT_RS06685 -4.4 -2.5 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS01595 -4.2 -8.3 homoserine O-acetyltransferase compare
BPHYT_RS12845 -4.2 -15.1 ATPase compare
BPHYT_RS17395 -4.1 -2.4 anthranilate synthase subunit II compare
BPHYT_RS02590 -4.1 -7.5 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS06045 -4.1 -8.2 transaldolase compare
BPHYT_RS03725 -4.0 -2.2 serine hydroxymethyltransferase compare
BPHYT_RS06405 -4.0 -5.7 phosphoribosylamine--glycine ligase compare
BPHYT_RS33840 -3.9 -6.0 amidophosphoribosyltransferase compare
BPHYT_RS33920 -3.9 -10.3 type II citrate synthase compare
BPHYT_RS05035 -3.8 -5.7 sugar ABC transporter permease compare
BPHYT_RS08850 -3.7 -3.1 transcriptional regulator compare
BPHYT_RS17700 -3.6 -4.0 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS07705 -3.6 -2.7 arginine succinyltransferase compare
BPHYT_RS05020 -3.4 -5.6 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS08960 -3.4 -2.5 threonine synthase compare
BPHYT_RS03535 -3.3 -6.4 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS04745 -3.1 -5.2 sulfate adenylyltransferase compare
BPHYT_RS23230 -3.1 -1.7 histidine kinase compare
BPHYT_RS17520 -3.1 -6.6 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS04720 -3.0 -3.6 transcriptional regulator compare
BPHYT_RS06920 -3.0 -7.7 iron permease FTR1 compare
BPHYT_RS13220 -3.0 -10.3 phosphomethylpyrimidine synthase compare
BPHYT_RS29620 -2.9 -1.4 hypothetical protein compare
BPHYT_RS29520 -2.9 -1.3 hypothetical protein compare
BPHYT_RS18705 -2.8 -2.2 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS02905 -2.8 -16.4 RNA polymerase subunit sigma-54 compare
BPHYT_RS04730 -2.8 -4.2 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS05025 -2.7 -3.0 sugar ABC transporter substrate-binding protein compare
BPHYT_RS12150 -2.7 -13.9 PII uridylyl-transferase compare
BPHYT_RS08565 -2.7 -1.1 dihydroorotate dehydrogenase compare
BPHYT_RS13605 -2.6 -1.5 tRNA-Pro compare
BPHYT_RS01455 -2.6 -1.2 peptide deformylase compare
BPHYT_RS06190 -2.6 -2.9 heptosyltransferase compare
BPHYT_RS12985 -2.4 -2.4 amino acid acetyltransferase compare
BPHYT_RS15670 -2.4 -7.6 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS05320 -2.3 -1.5 beta-lactamase compare
BPHYT_RS04290 -2.3 -1.9 glycosyl transferase family 2 compare
BPHYT_RS06105 -2.3 -2.3 hypothetical protein compare
BPHYT_RS03625 -2.2 -8.7 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS05040 -2.2 -4.9 sugar ABC transporter ATPase compare
BPHYT_RS20715 -2.2 -2.2 peptidase compare
BPHYT_RS05030 -2.2 -3.2 sugar ABC transporter permease compare
BPHYT_RS33905 -2.1 -1.8 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS03495 -2.1 -3.5 hypothetical protein compare
BPHYT_RS12935 -2.1 -5.9 chemotaxis protein CheY compare
BPHYT_RS12840 -2.0 -3.1 pyruvate dehydrogenase compare
BPHYT_RS17035 -2.0 -3.8 sugar kinase compare
BPHYT_RS14195 -2.0 -3.1 carbamoyl phosphate synthase small subunit compare
BPHYT_RS26685 -2.0 -2.0 precorrin-8X methylmutase compare
BPHYT_RS25005 -1.9 -1.5 FMN reductase compare
BPHYT_RS10540 -1.9 -1.4 secretion protein compare
BPHYT_RS04370 -1.9 -1.5 glycosyl transferase compare
BPHYT_RS04750 -1.9 -2.6 uroporphyrin-III C-methyltransferase compare
BPHYT_RS12940 -1.9 -4.8 signal transduction histidine kinase compare
BPHYT_RS08950 -1.9 -4.4 aminotransferase compare
BPHYT_RS02285 -1.8 -7.0 cell division protein compare
BPHYT_RS23875 -1.8 -1.3 sugar ABC transporter ATP-binding protein compare
BPHYT_RS10400 -1.8 -1.3 taurine ABC transporter permease compare
BPHYT_RS17760 -1.8 -4.4 ABC transporter permease compare
BPHYT_RS20840 -1.8 -2.3 beta-lactamase compare
BPHYT_RS04385 -1.8 -2.4 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS06195 -1.7 -1.2 membrane protein compare
BPHYT_RS04920 -1.7 -1.9 aspartate 1-decarboxylase compare
BPHYT_RS11795 -1.7 -1.3 membrane protein compare
BPHYT_RS07050 -1.7 -1.6 membrane protein compare
BPHYT_RS06925 -1.6 -7.1 membrane protein compare
BPHYT_RS02610 -1.6 -3.2 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS33215 -1.6 -4.7 glycosyltransferase compare
BPHYT_RS04285 -1.6 -2.3 rhamnosyltransferase compare
BPHYT_RS26080 -1.6 -1.5 ABC transporter ATPase compare
BPHYT_RS15075 -1.5 -1.8 dihydrokaempferol 4-reductase compare
BPHYT_RS03400 -1.5 -1.6 ATP-dependent DNA helicase RecG compare
BPHYT_RS17095 -1.5 -1.9 proline--tRNA ligase compare
BPHYT_RS36385 -1.5 -1.2 TetR family transcriptional regulator compare
BPHYT_RS09650 -1.5 -2.1 hypothetical protein compare
BPHYT_RS25335 -1.5 -1.1 hypothetical protein compare
BPHYT_RS18760 -1.5 -2.4 flagellar biosynthesis protein FliT compare
BPHYT_RS08150 -1.5 -1.1 membrane protein compare
BPHYT_RS09145 -1.5 -5.9 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS02595 -1.4 -1.5 sulfurtransferase compare
BPHYT_RS14865 -1.4 -2.9 UDP-glucose 6-dehydrogenase compare
BPHYT_RS19355 -1.4 -9.8 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase conserved
BPHYT_RS11310 -1.4 -1.2 LysR family transcriptional regulator compare
BPHYT_RS25270 -1.4 -2.4 multidrug MFS transporter compare
BPHYT_RS22360 -1.4 -2.2 response regulator receiver compare
BPHYT_RS17100 -1.4 -5.1 RNA pyrophosphohydrolase compare
BPHYT_RS14900 -1.4 -2.2 prephenate dehydrogenase compare
BPHYT_RS06910 -1.4 -4.3 membrane protein compare
BPHYT_RS36275 -1.4 -3.1 hypothetical protein compare
BPHYT_RS08360 -1.4 -2.2 LysR family transcriptional regulator compare
BPHYT_RS12465 -1.4 -3.8 inositol monophosphatase compare
BPHYT_RS29840 -1.3 -1.3 polysaccharide biosynthesis protein compare
BPHYT_RS31440 -1.3 -2.2 hypothetical protein compare
BPHYT_RS21025 -1.3 -1.3 cation-binding protein compare
BPHYT_RS31770 -1.3 -3.1 TetR family transcriptional regulator compare
BPHYT_RS15620 -1.3 -3.1 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS34655 -1.3 -1.4 2-amino-3-ketobutyrate CoA ligase compare
BPHYT_RS15710 -1.3 -1.2 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS06990 -1.3 -1.6 membrane protein compare
BPHYT_RS00690 -1.3 -1.0 transcriptional regulator compare
BPHYT_RS09565 -1.3 -1.5 acetyl-CoA acetyltransferase compare
BPHYT_RS27495 -1.2 -1.0 hypothetical protein compare
BPHYT_RS19920 -1.2 -1.0 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS11395 -1.2 -2.0 hypothetical protein compare
BPHYT_RS06930 -1.2 -2.9 hypothetical protein compare
BPHYT_RS35160 -1.2 -3.2 PKHD-type hydroxylase compare
BPHYT_RS24495 -1.2 -1.7 transcriptional regulator compare
BPHYT_RS04595 -1.2 -1.5 cytoplasmic protein compare
BPHYT_RS26925 -1.2 -1.7 NIPSNAP family containing protein compare
BPHYT_RS08335 -1.2 -1.1 hypothetical protein compare
BPHYT_RS20165 -1.2 -1.9 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BPHYT_RS08060 -1.2 -5.4 ribosome maturation factor RimP compare
BPHYT_RS02690 -1.2 -6.4 protoheme IX farnesyltransferase compare
BPHYT_RS24685 -1.1 -1.6 LysR family transcriptional regulator compare
BPHYT_RS24925 -1.1 -1.2 cytochrome O ubiquinol oxidase compare
BPHYT_RS12725 -1.1 -6.5 regulator compare
BPHYT_RS15950 -1.1 -4.7 tyrosine recombinase XerD compare
BPHYT_RS05610 -1.1 -4.8 DNA-cytosine methyltransferase compare
BPHYT_RS14550 -1.1 -1.0 tRNA-Asn compare
BPHYT_RS07660 -1.1 -1.9 sulfonate ABC transporter substrate-binding protein compare
BPHYT_RS26005 -1.1 -1.7 MarR family transcriptional regulator compare
BPHYT_RS14185 -1.1 -1.8 transcription elongation factor GreA compare
BPHYT_RS05905 -1.1 -1.0 hypothetical protein compare
BPHYT_RS30010 -1.1 -1.3 cell division protein compare
BPHYT_RS08125 -1.1 -4.9 ATPase compare
BPHYT_RS15325 -1.1 -2.5 ribonuclease PH compare
BPHYT_RS14400 -1.1 -2.4 anti-sigma factor compare
BPHYT_RS27655 -1.1 -0.8 potassium transporter compare
BPHYT_RS07055 -1.1 -1.6 sulfotransferase compare
BPHYT_RS08130 -1.1 -1.6 transposase compare
BPHYT_RS04820 -1.0 -3.7 LysR family transcriptional regulator compare
BPHYT_RS35155 -1.0 -5.9 TonB-denpendent receptor compare
BPHYT_RS33220 -1.0 -5.6 group 1 glycosyl transferase compare
BPHYT_RS21445 -1.0 -1.8 sugar ABC transporter ATP-binding protein compare
BPHYT_RS24220 -1.0 -1.5 alpha/beta hydrolase compare
BPHYT_RS10915 -1.0 -2.6 radical SAM protein compare
BPHYT_RS26525 -1.0 -1.0 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS20440 -1.0 -1.1 IclR family transcriptional regulator compare
BPHYT_RS29365 -1.0 -1.0 ATP-NAD kinase compare
BPHYT_RS15615 -1.0 -1.7 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS07165 -1.0 -1.4 peptide ABC transporter permease compare
BPHYT_RS31890 -1.0 -1.1 transposase compare
BPHYT_RS33990 -1.0 -0.7 ATPase compare
BPHYT_RS01965 -1.0 -1.4 tRNA-Ala compare
BPHYT_RS10285 -1.0 -1.8 hypothetical protein compare
BPHYT_RS33965 -1.0 -1.2 methylcitrate synthase compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source L-Citrulline in Burkholderia phytofirmans PsJN

For nitrogen source L-Citrulline across organisms