Experiment set3IT068 for Methanococcus maripaludis S2

Compare to:

Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 Vitamin & Casamino Acid FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS07345 -5.1 -9.7 glycine synthesis protein GlyXL (from data) compare
MMP_RS03450 -4.5 -3.5 glycine synthesis protein GlyXS (from data) compare
MMP_RS01175 -4.5 -7.3 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS07845 -4.1 -7.5 LL-diaminopimelate aminotransferase compare
MMP_RS01020 -4.1 -2.6 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS05500 -4.1 -14.7 2-isopropylmalate synthase compare
MMP_RS06685 -3.8 -18.6 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS05285 -3.7 -15.1 MMPL family transporter compare
MMP_RS05280 -3.6 -19.6 COG1361 S-layer family protein compare
MMP_RS03435 -3.4 -2.9 ketol-acid reductoisomerase compare
MMP_RS06680 -3.4 -19.7 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS01455 -3.4 -13.8 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS06345 -3.3 -15.1 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS04615 -3.3 -4.0 PDGLE domain-containing protein compare
MMP_RS06715 -3.2 -23.1 cache domain-containing protein compare
MMP_RS06720 -3.0 -15.2 response regulator transcription factor compare
MMP_RS05515 -3.0 -15.9 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS05920 -3.0 -1.8 50S ribosomal protein L37e compare
MMP_RS06350 -2.9 -11.9 HesA/MoeB/ThiF family protein compare
MMP_RS08745 -2.9 -9.3 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS03015 -2.9 -15.6 GTP 3' 8-cyclase MoaA compare
MMP_RS06375 -2.9 -8.9 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS06700 -2.9 -16.8 hypothetical protein compare
MMP_RS07730 -2.9 -3.6 pyruvate synthase subunit beta compare
MMP_RS06975 -2.8 -4.4 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS04215 -2.8 -9.9 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS04605 -2.7 -10.7 cobalt ECF transporter T component CbiQ compare
MMP_RS06355 -2.7 -5.3 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS06270 -2.6 -7.9 TIGR00300 family protein compare
MMP_RS01005 -2.6 -2.9 riboflavin synthase compare
MMP_RS07635 -2.6 -9.2 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS06625 -2.5 -4.0 DNA primase compare
MMP_RS01500 -2.4 -4.8 CBS domain-containing protein compare
MMP_RS07380 -2.4 -4.5 transcription elongation factor Spt5 compare
MMP_RS07605 -2.4 -5.4 diadenylate cyclase compare
MMP_RS01700 -2.3 -2.6 dihydroxy-acid dehydratase compare
MMP_RS03035 -2.3 -8.1 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS06705 -2.3 -8.2 formate/nitrite transporter family protein compare
MMP_RS02010 -2.3 -15.3 PHP domain-containing protein compare
MMP_RS08790 -2.3 -6.2 translation initiation factor IF-2 subunit alpha compare
MMP_RS05095 -2.3 -13.3 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS03640 -2.2 -7.0 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS04620 -2.2 -13.8 cobalt transporter CbiM compare
MMP_RS08300 -2.2 -2.9 metal-sulfur cluster assembly factor compare
MMP_RS07445 -2.2 -7.5 helix-turn-helix domain-containing protein compare
MMP_RS05100 -2.2 -17.4 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS05070 -2.2 -11.8 4Fe-4S dicluster domain-containing protein compare
MMP_RS00295 -2.2 -4.5 gamma carbonic anhydrase family protein compare
MMP_RS05265 -2.1 -3.8 2-isopropylmalate synthase compare
MMP_RS06400 -2.1 -2.1 4Fe-4S binding protein compare
MMP_RS05085 -2.1 -13.3 AAA family ATPase compare
MMP_RS06295 -2.1 -9.4 methanogenesis marker 14 protein compare
MMP_RS05060 -2.0 -11.9 AAA family ATPase compare
MMP_RS00695 -2.0 -2.1 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS05090 -2.0 -9.1 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS00300 -2.0 -1.9 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS05075 -2.0 -16.0 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS06340 -2.0 -10.0 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS05080 -2.0 -12.8 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS00305 -1.9 -3.5 phosphoribosyl-ATP diphosphatase compare
MMP_RS07735 -1.9 -1.8 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS05930 -1.9 -5.7 3-isopropylmalate dehydratase large subunit compare
MMP_RS07365 -1.9 -14.2 2-phosphoglycerate kinase compare
MMP_RS06120 -1.9 -5.1 UPF0147 family protein compare
MMP_RS06730 -1.9 -3.5 phosphopantothenate/pantothenate synthetase compare
MMP_RS00685 -1.9 -5.9 2-phospho-L-lactate guanylyltransferase compare
MMP_RS04890 -1.8 -1.9 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS07185 -1.8 -13.6 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS01985 -1.8 -8.4 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS09020 -1.8 -3.8 hypothetical protein compare
MMP_RS01610 -1.8 -5.1 hypothetical protein compare
MMP_RS05055 -1.8 -12.1 DUF166 domain-containing protein compare
MMP_RS06630 -1.7 -2.7 UPF0058 family protein compare
MMP_RS05425 -1.7 -5.7 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS01225 -1.7 -5.8 DUF5379 domain-containing protein compare
MMP_RS05065 -1.7 -5.7 CooT family nickel-binding protein compare
MMP_RS05555 -1.7 -1.9 DUF4040 domain-containing protein compare
MMP_RS06175 -1.7 -8.5 winged helix-turn-helix transcriptional regulator compare
MMP_RS01830 -1.6 -2.4 tRNA-Val compare
MMP_RS08095 -1.6 -10.1 dethiobiotin synthase compare
MMP_RS03025 -1.6 -7.2 molybdenum cofactor guanylyltransferase compare
MMP_RS05540 -1.6 -3.6 hypothetical protein compare
MMP_RS04500 -1.6 -11.9 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS08105 -1.6 -10.4 6-carboxyhexanoate--CoA ligase compare
MMP_RS06315 -1.5 -2.1 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS01800 -1.5 -4.3 TIGR00303 family protein compare
MMP_RS02340 -1.5 -3.9 DNA-directed RNA polymerase subunit E'' compare
MMP_RS06230 -1.4 -2.9 helix-turn-helix domain-containing protein compare
MMP_RS03445 -1.4 -2.2 methanogenesis marker 17 protein compare
MMP_RS07645 -1.4 -6.9 aldehyde dehydrogenase family protein compare
MMP_RS04585 -1.4 -9.2 AIR synthase related protein compare
MMP_RS01325 -1.4 -3.9 dihydroneopterin aldolase family protein compare
MMP_RS06930 -1.4 -10.4 MBL fold metallo-hydrolase compare
MMP_RS01755 -1.4 -1.9 DUF2097 domain-containing protein compare
MMP_RS04870 -1.4 -5.3 TIGR02253 family HAD-type hydrolase compare
MMP_RS02195 -1.4 -4.8 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS08330 -1.4 -6.8 NADH-quinone oxidoreductase subunit H compare
MMP_RS06020 -1.4 -5.5 archaeoflavoprotein AfpA compare
MMP_RS02800 -1.3 -5.7 nucleotidyltransferase domain-containing protein compare
MMP_RS05815 -1.3 -2.9 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS03315 -1.3 -1.2 ferrous iron transport protein A compare
MMP_RS03600 -1.3 -2.6 triose-phosphate isomerase compare
MMP_RS08210 -1.3 -3.6 phosphatidylglycerophosphatase A compare
MMP_RS05290 -1.3 -5.5 TetR/AcrR family transcriptional regulator compare
MMP_RS08100 -1.3 -7.1 8-amino-7-oxononanoate synthase compare
MMP_RS00290 -1.3 -6.9 hypothetical protein compare
MMP_RS08645 -1.3 -7.2 UPF0179 family protein compare
MMP_RS05925 -1.3 -3.9 small nuclear ribonucleoprotein compare
MMP_RS01265 -1.3 -3.1 hypothetical protein compare
MMP_RS08720 -1.3 -2.5 4Fe-4S binding protein compare
MMP_RS02345 -1.3 -3.4 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS06285 -1.3 -2.4 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS02240 -1.2 -5.0 methanogenesis marker 7 protein compare
MMP_RS06885 -1.2 -3.4 50S ribosome-binding GTPase compare
MMP_RS06370 -1.2 -5.9 biotin synthase BioB compare
MMP_RS03400 -1.2 -3.9 archease compare
MMP_RS01220 -1.2 -7.5 hypothetical protein compare
MMP_RS08635 -1.2 -2.3 UbiA family prenyltransferase compare
MMP_RS01545 -1.2 -2.0 CBS domain-containing protein compare
MMP_RS07580 -1.1 -2.4 DUF356 domain-containing protein compare
MMP_RS00750 -1.1 -3.1 fumarate hydratase compare
MMP_RS00720 -1.1 -7.0 metal-dependent hydrolase compare
MMP_RS03700 -1.1 -6.5 sodium:proton antiporter compare
MMP_RS04780 -1.1 -3.5 ribonuclease P compare
MMP_RS04790 -1.1 -7.2 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS06105 -1.1 -6.7 hydrogenase maturation peptidase HycI compare
MMP_RS07575 -1.1 -2.9 RNA ligase partner protein compare
MMP_RS06925 -1.1 -2.2 ribonuclease VapC4 compare
MMP_RS08460 -1.1 -3.3 proteasome-activating nucleotidase compare
MMP_RS05550 -1.1 -1.1 cation:proton antiporter compare
MMP_RS02875 -1.1 -7.9 chorismate pyruvate-lyase family protein compare
MMP_RS03250 -1.1 -3.1 MJ1244 family protein compare
MMP_RS05850 -1.1 -5.7 Ldh family oxidoreductase compare
MMP_RS07600 -1.0 -2.6 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS02190 -1.0 -2.7 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS03145 -1.0 -6.7 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS00040 -1.0 -6.4 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS04685 -1.0 -3.3 DUF126 domain-containing protein compare
MMP_RS01380 -1.0 -3.4 PHP domain-containing protein compare
MMP_RS08820 -1.0 -4.7 hypothetical protein compare
MMP_RS03960 -0.9 -1.6 hypothetical protein compare
MMP_RS07710 -0.9 -5.8 cell division protein FtsZ compare
MMP_RS08165 -0.9 -1.8 phosphoglycerate dehydrogenase compare
MMP_RS05430 -0.9 -5.8 TIGR00288 family NYN domain-containing protein compare
MMP_RS00555 -0.9 -7.3 MFS transporter compare
MMP_RS07005 -0.9 -1.0 4Fe-4S binding protein compare
MMP_RS07705 -0.9 -6.0 transcriptional regulator compare
MMP_RS05505 -0.9 -6.4 class IV adenylate cyclase compare
MMP_RS02165 -0.9 -4.9 tRNA-dihydrouridine synthase compare
MMP_RS07420 -0.9 -3.6 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS04090 -0.9 -3.6 hypothetical protein compare
MMP_RS02355 -0.9 -3.1 30S ribosomal protein S27ae compare
MMP_RS06130 -0.9 -3.1 peptidylprolyl isomerase compare
MMP_RS03580 -0.8 -3.0 signal recognition particle-docking protein FtsY compare
MMP_RS07200 -0.8 -4.1 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS01725 -0.8 -3.5 class I SAM-dependent methyltransferase family protein compare
MMP_RS03110 -0.8 -5.1 glycosyltransferase family 2 protein compare
MMP_RS07195 -0.8 -6.7 M20 family metallo-hydrolase compare
MMP_RS08370 -0.8 -1.0 cation:proton antiporter subunit C compare
MMP_RS04710 -0.8 -1.7 hypothetical protein compare
MMP_RS05845 -0.8 -2.2 tRNA-intron lyase compare
MMP_RS07410 -0.8 -6.4 4-demethylwyosine synthase TYW1 compare
MMP_RS03140 -0.8 -7.0 hypothetical protein compare
MMP_RS04955 -0.8 -2.9 DNA topoisomerase I compare
MMP_RS06840 -0.8 -1.1 DNA-directed RNA polymerase subunit N compare
MMP_RS01720 -0.8 -1.1 replication factor C large subunit compare
MMP_RS01385 -0.8 -0.9 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS08435 -0.8 -2.9 Era-like GTP-binding protein compare
MMP_RS08320 -0.8 -4.4 molybdopterin molybdotransferase MoeA compare
MMP_RS00455 -0.8 -5.8 orotate phosphoribosyltransferase-like protein compare
MMP_RS04775 -0.8 -3.1 adenosylhomocysteinase compare
MMP_RS07425 -0.8 -4.1 GTP-binding protein compare
MMP_RS05345 -0.8 -4.2 hypothetical protein compare
MMP_RS01795 -0.7 -1.0 methanogenesis marker 6 protein compare
MMP_RS02930 -0.7 -3.0 class I SAM-dependent methyltransferase compare
MMP_RS07350 -0.7 -2.0 preprotein translocase subunit Sec61beta compare
MMP_RS05440 -0.7 -4.6 winged helix-turn-helix transcriptional regulator compare
MMP_RS00130 -0.7 -1.4 nickel-responsive transcriptional regulator NikR compare
MMP_RS07630 -0.7 -1.2 ATP-binding cassette domain-containing protein compare
MMP_RS03095 -0.7 -4.6 diphthine synthase compare
MMP_RS07525 -0.7 -4.8 4Fe-4S binding protein compare
MMP_RS00985 -0.7 -3.5 CDC48 family AAA ATPase compare
MMP_RS02135 -0.7 -2.8 DUF5612 domain-containing protein compare
MMP_RS02280 -0.7 -0.9 DUF211 domain-containing protein compare
MMP_RS06895 -0.7 -2.0 selenocysteine-specific translation elongation factor compare
MMP_RS00475 -0.7 -4.6 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS08240 -0.7 -3.8 methanogenesis marker 16 metalloprotein compare
MMP_RS01240 -0.7 -1.0 7-cyano-7-deazaguanine synthase QueC compare
MMP_RS03305 -0.7 -3.8 winged helix-turn-helix domain-containing protein compare
MMP_RS00110 -0.7 -1.8 hypothetical protein compare
MMP_RS06865 -0.7 -1.4 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS03155 -0.7 -4.4 precorrin-6A reductase compare
MMP_RS05875 -0.6 -3.6 hydroxyethylthiazole kinase compare
MMP_RS06980 -0.6 -3.8 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS01445 -0.6 -4.0 hypothetical protein compare
MMP_RS00060 -0.6 -1.2 3-dehydroquinate synthase II compare
MMP_RS00320 -0.6 -2.1 class I SAM-dependent methyltransferase compare
MMP_RS00515 -0.6 -1.3 DUF655 domain-containing protein compare
MMP_RS02780 -0.6 -4.6 hypothetical protein compare
MMP_RS02170 -0.6 -3.0 CBS domain-containing protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 Sodium acetate across organisms