Experiment set3IT068 for Methanococcus maripaludis S2

Compare to:

Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 Vitamin & Casamino Acid FREE

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS01370 +1.5 13.1 acetate--CoA ligase family protein compare
MMP_RS01650 +0.9 1.7 sulfurtransferase TusA family protein compare
MMP_RS06940 +0.7 2.1 polyprenyl diphosphate synthase compare
MMP_RS00675 +0.7 1.4 nitroreductase family protein compare
MMP_RS02605 +0.6 1.1 MotA/TolQ/ExbB proton channel family protein compare
MMP_RS08930 +0.6 1.3 hypothetical protein compare
MMP_RS06575 +0.5 3.0 fluoride efflux transporter CrcB compare
MMP_RS01865 +0.5 1.9 GPR1/FUN34/YaaH family transporter compare
MMP_RS01570 +0.5 1.5 hypothetical protein compare
MMP_RS07125 +0.4 3.1 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS02745 +0.4 1.1 hypothetical protein compare
MMP_RS08980 +0.4 2.7 hypothetical protein compare
MMP_RS05970 +0.4 1.8 class II SORL domain-containing protein compare
MMP_RS08455 +0.4 1.7 multiprotein bridging factor aMBF1 compare
MMP_RS07895 +0.4 1.8 cytochrome c compare
MMP_RS01975 +0.4 3.2 hypothetical protein compare
MMP_RS03215 +0.4 2.7 MBL fold metallo-hydrolase compare
MMP_RS04740 +0.4 2.4 DUF473 domain-containing protein compare
MMP_RS03390 +0.3 2.2 malate dehydrogenase compare
MMP_RS00915 +0.3 2.4 DUF116 domain-containing protein compare
MMP_RS07130 +0.3 3.1 coenzyme F420 hydrogenase subunit gamma compare
MMP_RS01435 +0.3 1.6 DMT family transporter compare
MMP_RS08345 +0.3 2.8 4Fe-4S binding protein compare
MMP_RS06570 +0.3 2.0 DUF190 domain-containing protein compare
MMP_RS08280 +0.3 1.9 proteasome assembly chaperone family protein compare
MMP_RS06965 +0.3 2.4 TIGR04014 family B12-binding domain/radical SAM domain-containing protein compare
MMP_RS00945 +0.3 0.9 PadR family transcriptional regulator compare
MMP_RS06540 +0.3 1.2 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMP_RS05525 +0.3 1.8 calcium/sodium antiporter compare
MMP_RS06650 +0.3 2.3 glycoside hydrolase family 57 protein compare
MMP_RS07120 +0.3 2.2 coenzyme F420 hydrogenase subunit alpha compare
MMP_RS07620 +0.3 1.6 energy-coupling factor ABC transporter substrate-binding protein compare
MMP_RS01885 +0.3 1.8 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS08260 +0.3 1.9 DUF99 family protein compare
MMP_RS07090 +0.3 1.8 tRNA (adenine-N1)-methyltransferase compare
MMP_RS03340 +0.3 0.5 ABC transporter ATP-binding protein compare
MMP_RS07970 +0.3 1.6 hypothetical protein compare
MMP_RS06430 +0.3 1.9 6-carboxytetrahydropterin synthase QueD compare
MMP_RS03220 +0.3 1.0 RNA 2' 3'-cyclic phosphodiesterase compare
MMP_RS06610 +0.3 0.8 DUF2334 domain-containing protein compare
MMP_RS06860 +0.3 1.0 4Fe-4S binding protein compare
MMP_RS04165 +0.3 2.0 TetR/AcrR family transcriptional regulator compare
MMP_RS06005 +0.2 1.0 heavy-metal-associated domain-containing protein compare
MMP_RS02045 +0.2 0.8 tRNA-Met compare
MMP_RS08235 +0.2 1.4 hypothetical protein compare
MMP_RS08775 +0.2 1.2 methanogenesis marker 9 domain-containing protein compare
MMP_RS00395 +0.2 0.9 MGMT family protein compare
MMP_RS06600 +0.2 0.7 class III signal peptide-containing protein compare
MMP_RS03300 +0.2 0.4 TOBE domain-containing protein compare
MMP_RS00655 +0.2 1.3 hypothetical protein compare
MMP_RS03385 +0.2 0.5 cation diffusion facilitator family transporter compare
MMP_RS01090 +0.2 1.6 ABC transporter substrate-binding protein compare
MMP_RS02370 +0.2 1.2 NifB/NifX family molybdenum-iron cluster-binding protein compare
MMP_RS05780 +0.2 1.8 multidrug resistance efflux transporter family protein compare
MMP_RS06770 +0.2 1.4 DHH family phosphoesterase compare
MMP_RS08265 +0.2 1.4 rubrerythrin compare
MMP_RS06910 +0.2 1.8 RlmF-related methyltransferase compare
MMP_RS05950 +0.2 1.5 nickel-dependent hydrogenase large subunit compare
MMP_RS08090 +0.2 1.3 hypothetical protein compare
MMP_RS07910 +0.2 1.3 NAD(P)H-hydrate dehydratase compare
MMP_RS05945 +0.2 1.3 CBS domain-containing protein compare
MMP_RS08700 +0.2 1.5 hypothetical protein compare
MMP_RS07100 +0.2 1.7 hypothetical protein compare
MMP_RS01940 +0.2 0.9 MoxR family ATPase compare
MMP_RS01875 +0.2 1.4 N-acetyltransferase compare
MMP_RS04480 +0.2 1.9 lysine 2 3-aminomutase compare
MMP_RS05820 +0.2 1.6 RNA-binding transcriptional accessory protein compare
MMP_RS01420 +0.2 0.9 hypothetical protein compare
MMP_RS02705 +0.2 1.2 formylmethanofuran dehydrogenase subunit B compare
MMP_RS05830 +0.2 1.1 peptidyl-prolyl cis-trans isomerase compare
MMP_RS01970 +0.2 1.7 TIGR04279 domain-containing protein compare
MMP_RS06320 +0.2 1.3 hypothetical protein compare
MMP_RS00545 +0.2 1.4 XRE family transcriptional regulator compare
MMP_RS07840 +0.2 0.7 ribonuclease III compare
MMP_RS02790 +0.2 0.5 class III signal peptide-containing protein compare
MMP_RS03790 +0.2 1.5 hypothetical protein compare
MMP_RS03965 +0.2 0.9 hypothetical protein compare
MMP_RS02445 +0.2 1.7 putative DNA binding domain-containing protein compare
MMP_RS08835 +0.2 1.7 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein compare
MMP_RS01880 +0.2 1.1 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS05700 +0.2 1.7 TfuA-related McrA-glycine thioamidation protein compare
MMP_RS08500 +0.2 1.2 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS09050 +0.2 1.4 CAP domain-containing protein compare
MMP_RS01465 +0.2 0.8 hypothetical protein compare
MMP_RS06560 +0.2 1.4 hypothetical protein compare
MMP_RS06155 +0.2 1.0 DUF4186 domain-containing protein compare
MMP_RS08630 +0.2 0.9 archaellar assembly protein FlaJ compare
MMP_RS05985 +0.2 0.5 hypothetical protein compare
MMP_RS05790 +0.2 1.2 HDIG domain-containing protein compare
MMP_RS08470 +0.2 1.3 ATP-binding cassette domain-containing protein compare
MMP_RS08580 +0.2 1.1 flagellin compare
MMP_RS00660 +0.2 1.4 alkaline phosphatase family protein compare
MMP_RS01150 +0.2 1.1 aldo/keto reductase compare
MMP_RS06655 +0.2 1.3 glycoside hydrolase family 15 protein compare
MMP_RS05660 +0.2 1.2 phosphate ABC transporter substrate-binding protein compare
MMP_RS05990 +0.2 1.3 DsrE family protein compare
MMP_RS01550 +0.2 1.4 DUF1624 domain-containing protein compare
MMP_RS08310 +0.2 0.7 TMEM165/GDT1 family protein compare
MMP_RS03465 +0.2 0.4 adenine phosphoribosyltransferase compare
MMP_RS07135 +0.2 1.3 coenzyme F420 hydrogenase subunit beta compare
MMP_RS05445 +0.2 1.1 CoB--CoM heterodisulfide reductase subunit B compare
MMP_RS05450 +0.2 1.1 CoB--CoM heterodisulfide reductase subunit C compare
MMP_RS04795 +0.2 1.3 tRNA (pseudouridine(54)-N(1))-methyltransferase TrmY compare
MMP_RS08130 +0.2 1.3 IGHMBP2 family helicase compare
MMP_RS02295 +0.2 1.3 TatD family hydrolase compare
MMP_RS06190 +0.2 1.3 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO compare
MMP_RS02675 +0.2 0.5 hypothetical protein compare
MMP_RS08075 +0.2 0.9 DUF749 domain-containing protein compare
MMP_RS07985 +0.2 1.4 nitroreductase family protein compare
MMP_RS07640 +0.2 0.9 mechanosensitive ion channel family protein compare
MMP_RS05490 +0.2 0.8 IMPACT family protein compare
MMP_RS04030 +0.2 0.9 hypothetical protein compare
MMP_RS01100 +0.2 0.4 ABC transporter ATP-binding protein compare
MMP_RS05275 +0.2 1.3 AI-2E family transporter compare
MMP_RS03405 +0.1 0.9 RNA 3'-terminal phosphate cyclase compare
MMP_RS01890 +0.1 0.5 nucleotide sugar dehydrogenase compare
MMP_RS05435 +0.1 1.1 5'/3'-nucleotidase SurE compare
MMP_RS00910 +0.1 1.1 2-phosphosulfolactate phosphatase compare
MMP_RS01950 +0.1 1.3 hypothetical protein compare
MMP_RS06670 +0.1 0.7 glucose-6-phosphate isomerase compare
MMP_RS04485 +0.1 1.3 putative beta-lysine N-acetyltransferase compare
MMP_RS06150 +0.1 1.2 hypothetical protein compare
MMP_RS03320 +0.1 0.6 metal-dependent transcriptional regulator compare
MMP_RS06520 +0.1 0.8 DUF1786 domain-containing protein compare
MMP_RS08535 +0.1 1.0 bis-aminopropyl spermidine synthase family protein compare
MMP_RS06495 +0.1 0.6 YkgJ family cysteine cluster protein compare
MMP_RS07775 +0.1 0.8 alanine dehydrogenase compare
MMP_RS04945 +0.1 0.8 hypothetical protein compare
MMP_RS08245 +0.1 1.1 DUF4013 domain-containing protein compare
MMP_RS06275 +0.1 1.0 ATP-dependent DNA helicase compare
MMP_RS07155 +0.1 1.0 MFS transporter compare
MMP_RS04815 +0.1 1.0 chemotaxis protein CheD compare
MMP_RS04530 +0.1 1.1 ABC transporter permease compare
MMP_RS08085 +0.1 1.1 hypothetical protein compare
MMP_RS08160 +0.1 0.9 EamA family transporter compare
MMP_RS07890 +0.1 0.5 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS04020 +0.1 0.9 hypothetical protein compare
MMP_RS00865 +0.1 0.9 SLC13 family permease compare
MMP_RS00905 +0.1 0.8 phenylacetate--CoA ligase compare
MMP_RS07850 +0.1 0.5 prephenate dehydratase compare
MMP_RS07805 +0.1 0.9 ABC transporter permease compare
MMP_RS08610 +0.1 1.0 flagellar protein F compare
MMP_RS05455 +0.1 1.0 DUF167 domain-containing protein compare
MMP_RS08860 +0.1 0.9 MinD/ParA family protein compare
MMP_RS08390 +0.1 0.7 DUF5400 domain-containing protein compare
MMP_RS01630 +0.1 1.1 N-glycosylase/DNA lyase compare
MMP_RS01065 +0.1 1.1 alpha/beta hydrolase compare
MMP_RS02290 +0.1 0.8 MBL fold metallo-hydrolase compare
MMP_RS05575 +0.1 1.1 hypothetical protein compare
MMP_RS00140 +0.1 0.9 DUF192 domain-containing protein compare
MMP_RS07595 +0.1 1.1 hypothetical protein compare
MMP_RS03820 +0.1 0.8 EamA family transporter compare
MMP_RS08405 +0.1 1.0 MFS transporter compare
MMP_RS01955 +0.1 0.5 hypothetical protein compare
MMP_RS02510 +0.1 0.9 site-specific integrase compare
MMP_RS00155 +0.1 0.8 heavy metal-binding domain-containing protein compare
MMP_RS00285 +0.1 0.9 TIGR04013 family B12-binding domain/radical SAM domain-containing protein compare
MMP_RS02970 +0.1 1.0 hypothetical protein compare
MMP_RS08275 +0.1 1.0 hypothetical protein compare
MMP_RS04050 +0.1 0.9 hypothetical protein compare
MMP_RS07675 +0.1 1.2 S-layer protein compare
MMP_RS08945 +0.1 1.0 hypothetical protein compare
MMP_RS03325 +0.1 1.0 hypothetical protein compare
MMP_RS02020 +0.1 0.5 gamma-glutamylcyclotransferase compare
MMP_RS07115 +0.1 0.9 MBL fold metallo-hydrolase compare
MMP_RS08480 +0.1 0.9 molybdate ABC transporter substrate-binding protein compare
MMP_RS00955 +0.1 1.0 coenzyme gamma-F420-2:alpha-L-glutamate ligase compare
MMP_RS04725 +0.1 0.9 hypothetical protein compare
MMP_RS04015 +0.1 0.5 hypothetical protein compare
MMP_RS02910 +0.1 0.9 ABC transporter substrate-binding protein compare
MMP_RS06555 +0.1 0.7 cupin domain-containing protein compare
MMP_RS02840 +0.1 0.7 DUF123 domain-containing protein compare
MMP_RS02305 +0.1 0.9 DUF378 domain-containing protein compare
MMP_RS00800 +0.1 0.9 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS03670 +0.1 0.5 DUF1890 domain-containing protein compare
MMP_RS08485 +0.1 0.8 tungstate ABC transporter substrate-binding protein WtpA compare
MMP_RS02890 +0.1 0.8 TIGR00296 family protein compare
MMP_RS02005 +0.1 0.8 RNA ligase compare
MMP_RS05235 +0.1 0.9 exodeoxyribonuclease III compare
MMP_RS01980 +0.1 1.0 trimeric intracellular cation channel family protein compare
MMP_RS03740 +0.1 0.7 indolepyruvate oxidoreductase subunit beta compare
MMP_RS02400 +0.1 1.0 site-2 protease family protein compare
MMP_RS01485 +0.1 0.9 right-handed parallel beta-helix repeat-containing protein compare
MMP_RS03205 +0.1 0.2 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS06290 +0.1 0.8 DNA repair and recombination protein RadA compare
MMP_RS05360 +0.1 0.7 hypothetical protein compare
MMP_RS01540 +0.1 0.7 DUF504 domain-containing protein compare
MMP_RS00375 +0.1 1.0 ammonium transporter compare
MMP_RS04340 +0.1 1.0 uroporphyrinogen decarboxylase compare
MMP_RS00640 +0.1 0.8 ABC transporter substrate-binding protein compare
MMP_RS02895 +0.1 0.8 DHH family phosphoesterase compare
MMP_RS05960 +0.1 0.9 CoB--CoM heterodisulfide reductase subunit B compare
MMP_RS06660 +0.1 0.9 glycosyltransferase family 4 protein compare
MMP_RS04365 +0.1 0.9 M48 family metallopeptidase compare
MMP_RS01900 +0.1 0.8 hypothetical protein compare
MMP_RS07770 +0.1 0.7 alanine racemase compare
MMP_RS01960 +0.1 0.1 hypothetical protein compare
MMP_RS07590 +0.1 0.9 hypothetical protein compare
MMP_RS01920 +0.1 0.9 glycosyltransferase family 2 protein compare
MMP_RS04445 +0.1 0.8 P-II family nitrogen regulator compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 Sodium acetate across organisms