Experiment set3IT068 for Burkholderia phytofirmans PsJN

Compare to:

D-Alanine nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS18935 +1.7 8.7 flagellar biosynthesis regulator FlhF compare
BPHYT_RS26775 +1.6 1.8 chemotaxis protein CheB compare
BPHYT_RS31050 +1.5 1.9 epimerase compare
BPHYT_RS25845 +1.5 1.8 RND transporter MFP subunit compare
BPHYT_RS18945 +1.5 9.3 flagellar biosynthesis protein FlhB compare
BPHYT_RS18885 +1.5 8.7 flagellar basal body rod modification protein FlgD compare
BPHYT_RS18830 +1.5 7.2 flagellar biosynthesis protein FliQ compare
BPHYT_RS18780 +1.4 6.0 flagellar motor switch protein FliG compare
BPHYT_RS14255 +1.4 10.1 ABC transporter compare
BPHYT_RS18775 +1.3 9.1 flagellar M-ring protein FliF compare
BPHYT_RS14250 +1.3 6.0 glycosyl transferase compare
BPHYT_RS18800 +1.3 6.9 flagellar hook-length control protein compare
BPHYT_RS18880 +1.3 9.6 flagellar hook protein FlgE compare
BPHYT_RS26550 +1.3 1.6 Fis family transcriptional regulator compare
BPHYT_RS36495 +1.3 2.3 peptidase compare
BPHYT_RS18790 +1.3 7.1 ATP synthase compare
BPHYT_RS18940 +1.2 7.5 flagellar biosynthesis protein FlhA compare
BPHYT_RS10305 +1.2 2.1 hypothetical protein compare
BPHYT_RS18865 +1.2 3.6 flagellar L-ring protein FlgH compare
BPHYT_RS18875 +1.2 7.8 flagellar basal body rod protein FlgF compare
BPHYT_RS29320 +1.2 2.4 histidine kinase compare
BPHYT_RS23090 +1.2 2.0 histidine kinase compare
BPHYT_RS22470 +1.2 1.9 hydrolase compare
BPHYT_RS03025 +1.2 2.5 methyl-accepting chemotaxis protein compare
BPHYT_RS18795 +1.2 8.1 flagellar export protein FliJ compare
BPHYT_RS28065 +1.2 1.4 hypothetical protein compare
BPHYT_RS18870 +1.1 5.0 flagellar basal body rod protein FlgG compare
BPHYT_RS09385 +1.1 1.3 FAD-dependent oxidoreductase compare
BPHYT_RS18890 +1.1 6.3 flagellar basal body rod protein FlgC compare
BPHYT_RS18925 +1.1 6.1 RNA polymerase sigma70 compare
BPHYT_RS18825 +1.1 4.9 flagellar biosynthesis protein FliP compare
BPHYT_RS27920 +1.1 1.7 tricarballylate utilization protein B compare
BPHYT_RS23880 +1.1 2.0 sugar ABC transporter permease compare
BPHYT_RS33990 +1.1 1.3 ATPase compare
BPHYT_RS18810 +1.1 6.3 flagellar motor switch protein FliM compare
BPHYT_RS05395 +1.1 1.6 hypothetical protein compare
BPHYT_RS16335 +1.1 1.0 membrane protein compare
BPHYT_RS18785 +1.1 2.4 flagellar assembly protein FliH compare
BPHYT_RS23520 +1.1 1.4 peroxidase compare
BPHYT_RS11960 +1.1 1.2 MarR family transcriptional regulator compare
BPHYT_RS18900 +1.1 8.3 flagella basal body P-ring formation protein FlgA compare
BPHYT_RS26910 +1.1 2.1 hypothetical protein compare
BPHYT_RS22295 +1.1 1.4 LysR family transcriptional regulator compare
BPHYT_RS09585 +1.0 1.3 hypothetical protein compare
BPHYT_RS18820 +1.0 2.1 flagellar biosynthesis protein FliO compare
BPHYT_RS13245 +1.0 4.8 hypothetical protein compare
BPHYT_RS26465 +1.0 1.3 metallophosphoesterase compare
BPHYT_RS01010 +1.0 2.9 hypothetical protein compare
BPHYT_RS18860 +1.0 3.5 flagellar P-ring protein FlgI compare
BPHYT_RS16250 +1.0 1.2 N5-carboxyaminoimidazole ribonucleotide mutase compare
BPHYT_RS20940 +1.0 2.2 citrate synthase compare
BPHYT_RS04010 +1.0 1.4 glycosyl transferase compare
BPHYT_RS20095 +1.0 1.0 transcriptional regulator compare
BPHYT_RS00770 +1.0 1.2 conjugal transfer protein TraC compare
BPHYT_RS07690 +1.0 2.8 AraC family transcriptional regulator compare
BPHYT_RS02725 +1.0 2.0 GntR family transcriptional regulator compare
BPHYT_RS06930 +1.0 3.7 hypothetical protein compare
BPHYT_RS27860 +1.0 2.1 membrane protein compare
BPHYT_RS31030 +1.0 2.9 tyrosine protein kinase compare
BPHYT_RS28240 +1.0 3.3 L-rhamnonate dehydratase compare
BPHYT_RS01630 +1.0 2.6 ATP-dependent protease ATPase subunit HslU compare
BPHYT_RS31125 +0.9 3.0 hypothetical protein compare
BPHYT_RS18895 +0.9 4.4 flagellar basal body rod protein FlgB compare
BPHYT_RS23270 +0.9 1.5 enoyl-CoA hydratase compare
BPHYT_RS06710 +0.9 1.3 hypothetical protein compare
BPHYT_RS31515 +0.9 1.4 agmatinase compare
BPHYT_RS09185 +0.9 1.4 hypothetical protein compare
BPHYT_RS29085 +0.9 2.0 LysR family transcriptional regulator compare
BPHYT_RS26965 +0.9 1.0 L-lactate dehydrogenase, LldG subunit (from data) compare
BPHYT_RS05335 +0.9 2.1 AraC family transcriptional regulator compare
BPHYT_RS01795 +0.9 4.5 histidine kinase compare
BPHYT_RS12820 +0.9 3.8 D-alanyl-D-alanine carboxypeptidase compare
BPHYT_RS13835 +0.9 1.0 S-adenosylhomocysteine nucleosidase compare
BPHYT_RS33030 +0.9 0.8 hypothetical protein compare
BPHYT_RS14205 +0.9 4.9 lytic transglycosylase compare
BPHYT_RS20805 +0.9 2.5 LacI family transcriptional regulator compare
BPHYT_RS24665 +0.9 1.2 ABC transporter permease compare
BPHYT_RS18805 +0.9 3.0 flagellar basal body protein FliL compare
BPHYT_RS09970 +0.9 2.5 glutathione S-transferase compare
BPHYT_RS27785 +0.9 1.4 hypothetical protein compare
BPHYT_RS32150 +0.9 1.3 hypothetical protein compare
BPHYT_RS16180 +0.8 0.8 TetR family transcriptional regulator compare
BPHYT_RS29110 +0.8 1.3 DNA-directed DNA polymerase compare
BPHYT_RS07380 +0.8 2.2 membrane protein compare
BPHYT_RS28170 +0.8 3.2 nitrate ABC transporter substrate-binding protein compare
BPHYT_RS22095 +0.8 4.9 porin compare
BPHYT_RS13080 +0.8 1.1 hypothetical protein compare
BPHYT_RS03090 +0.8 1.1 hypothetical protein compare
BPHYT_RS29820 +0.8 1.8 hypothetical protein compare
BPHYT_RS25210 +0.8 1.2 drug:proton antiporter compare
BPHYT_RS26300 +0.8 1.1 ATP-dependent DNA ligase compare
BPHYT_RS30185 +0.8 1.4 DNA-directed RNA polymerase subunit alpha compare
BPHYT_RS02965 +0.8 2.0 membrane protein compare
BPHYT_RS21460 +0.8 1.6 UDP-N-acetylglucosamine 2-epimerase compare
BPHYT_RS25575 +0.8 0.9 alpha/beta hydrolase compare
BPHYT_RS13380 +0.8 3.0 porin compare
BPHYT_RS00370 +0.8 3.3 ABC transporter ATP-binding protein compare
BPHYT_RS23830 +0.8 1.4 acetyl-CoA hydrolase compare
BPHYT_RS18855 +0.8 3.4 flagellar rod assembly protein FlgJ compare
BPHYT_RS09235 +0.8 2.2 hypothetical protein compare
BPHYT_RS00020 +0.8 3.4 PAAR compare
BPHYT_RS29250 +0.8 2.0 dihydrodipicolinate synthase compare
BPHYT_RS26540 +0.8 1.2 hypothetical protein compare
BPHYT_RS35730 +0.8 2.7 hypothetical protein compare
BPHYT_RS22265 +0.8 0.7 hypothetical protein compare
BPHYT_RS31900 +0.8 0.9 short-chain dehydrogenase/reductase SDR compare
BPHYT_RS26770 +0.7 1.8 histidine kinase compare
BPHYT_RS28350 +0.7 1.2 fatty acid desaturase compare
BPHYT_RS30425 +0.7 1.2 LysR family transcriptional regulator compare
BPHYT_RS18835 +0.7 0.7 flagellar biosynthesis protein FliR compare
BPHYT_RS08000 +0.7 1.3 antibiotic biosynthesis monooxygenase compare
BPHYT_RS06535 +0.7 2.2 membrane protein compare
BPHYT_RS36040 +0.7 1.5 hypothetical protein compare
BPHYT_RS36035 +0.7 1.0 hypothetical protein compare
BPHYT_RS10300 +0.7 2.9 racemase compare
BPHYT_RS15360 +0.7 1.9 hypothetical protein compare
BPHYT_RS11805 +0.7 0.8 hypothetical protein compare
BPHYT_RS23895 +0.7 1.7 hypothetical protein compare
BPHYT_RS27545 +0.7 1.3 histidine kinase compare
BPHYT_RS04215 +0.7 2.0 hypothetical protein compare
BPHYT_RS20165 +0.7 1.4 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BPHYT_RS05440 +0.7 2.9 hypothetical protein compare
BPHYT_RS09725 +0.7 2.3 exopolysaccharide biosynthesis protein compare
BPHYT_RS27995 +0.7 1.9 hypothetical protein compare
BPHYT_RS20725 +0.7 0.9 histidine kinase compare
BPHYT_RS32750 +0.7 1.2 lipoprotein compare
BPHYT_RS18930 +0.7 3.3 flagellar biosynthesis protein FlhG compare
BPHYT_RS05405 +0.7 1.8 GCN5 family acetyltransferase compare
BPHYT_RS28660 +0.7 1.1 polyvinylalcohol dehydrogenase compare
BPHYT_RS28605 +0.7 1.7 NADPH-dependent FMN reductase compare
BPHYT_RS25100 +0.7 1.6 serine dehydratase compare
BPHYT_RS26515 +0.7 1.8 HAD family hydrolase compare
BPHYT_RS23860 +0.7 1.4 malonic semialdehyde reductase compare
BPHYT_RS30775 +0.7 1.4 gluconate 2-dehydrogenase compare
BPHYT_RS08415 +0.7 1.5 hypothetical protein compare
BPHYT_RS27430 +0.7 1.2 LysR family transcriptional regulator compare
BPHYT_RS30235 +0.7 2.3 tartrate dehydrogenase compare
BPHYT_RS26705 +0.7 2.4 hypothetical protein compare
BPHYT_RS20085 +0.7 1.5 mannosyltransferase compare
BPHYT_RS29020 +0.7 1.8 hypothetical protein compare
BPHYT_RS08525 +0.7 0.6 SAM-dependent methyltransferase compare
BPHYT_RS08425 +0.7 2.9 hypothetical protein compare
BPHYT_RS16090 +0.7 1.0 hypothetical protein compare
BPHYT_RS35165 +0.7 1.1 peptidase compare
BPHYT_RS07095 +0.7 1.4 LysR family transcriptional regulator compare
BPHYT_RS20695 +0.7 1.2 ribokinase compare
BPHYT_RS30590 +0.7 1.6 transcriptional regulator compare
BPHYT_RS26285 +0.7 1.6 glycogen debranching protein compare
BPHYT_RS26975 +0.7 1.1 L-lactate dehydrogenase, LldE subunit (from data) compare
BPHYT_RS23225 +0.7 0.9 hypothetical protein compare
BPHYT_RS10740 +0.7 0.9 LuxR family transcriptional regulator compare
BPHYT_RS07320 +0.7 0.9 dihydrodipicolinate synthetase compare
BPHYT_RS32605 +0.7 1.5 hypothetical protein compare
BPHYT_RS06500 +0.7 1.6 LOG family protein compare
BPHYT_RS29090 +0.7 1.5 oxidoreductase compare
BPHYT_RS34490 +0.7 0.7 hypothetical protein compare
BPHYT_RS30315 +0.7 1.3 LysR family transcriptional regulator compare
BPHYT_RS20060 +0.6 0.9 hypothetical protein compare
BPHYT_RS16570 +0.6 3.4 glutathione S-transferase compare
BPHYT_RS11915 +0.6 1.7 hypothetical protein compare
BPHYT_RS36355 +0.6 0.9 hypothetical protein compare
BPHYT_RS01790 +0.6 4.2 LuxR family transcriptional regulator compare
BPHYT_RS00335 +0.6 1.9 peptidase M19 compare
BPHYT_RS04625 +0.6 1.1 urea ABC transporter ATP-binding protein compare
BPHYT_RS27500 +0.6 3.4 hypothetical protein compare
BPHYT_RS08340 +0.6 0.3 chemotaxis protein CheY compare
BPHYT_RS33185 +0.6 3.3 methyltransferase type 11 compare
BPHYT_RS36600 +0.6 1.8 lytic transglycosylase compare
BPHYT_RS06335 +0.6 0.9 CopG family transcriptional regulator compare
BPHYT_RS30900 +0.6 2.0 transcriptional regulator compare
BPHYT_RS09600 +0.6 1.6 hypothetical protein compare
BPHYT_RS10850 +0.6 0.8 LysR family transcriptional regulator compare
BPHYT_RS29840 +0.6 1.1 polysaccharide biosynthesis protein compare
BPHYT_RS02105 +0.6 2.4 multidrug DMT transporter permease compare
BPHYT_RS22555 +0.6 2.4 transcriptional regulator compare
BPHYT_RS10345 +0.6 0.6 flagellar motor protein MotB compare
BPHYT_RS00980 +0.6 0.8 GCN5 family acetyltransferase compare
BPHYT_RS20135 +0.6 1.9 UDP-N-acetyl-D-mannosamine transferase compare
BPHYT_RS05290 +0.6 0.6 hypothetical protein compare
BPHYT_RS30560 +0.6 1.7 transcriptional regulator compare
BPHYT_RS28620 +0.6 1.3 enoyl-CoA hydratase compare
BPHYT_RS33135 +0.6 1.5 LysR family transcriptional regulator compare
BPHYT_RS16265 +0.6 1.4 hypothetical protein compare
BPHYT_RS30340 +0.6 1.4 AraC family transcriptional regulator compare
BPHYT_RS04400 +0.6 1.1 Crp/Fnr family transcriptional regulator compare
BPHYT_RS20935 +0.6 1.8 dehydrogenase compare
BPHYT_RS07940 +0.6 1.2 3-beta hydroxysteroid dehydrogenase compare
BPHYT_RS26900 +0.6 2.3 isoprenylcysteine carboxyl methyltransferase compare
BPHYT_RS23720 +0.6 4.3 nH(3)-dependent NAD(+) synthetase compare
BPHYT_RS09480 +0.6 0.9 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS14410 +0.6 1.6 hypothetical protein compare
BPHYT_RS20715 +0.6 1.2 peptidase compare
BPHYT_RS16880 +0.6 0.9 malic enzyme compare
BPHYT_RS17925 +0.6 2.1 hypothetical protein compare
BPHYT_RS16055 +0.6 1.6 sugar ABC transporter permease compare
BPHYT_RS08765 +0.6 0.6 ABC transporter ATP-binding protein compare
BPHYT_RS08615 +0.6 0.8 hypothetical protein compare
BPHYT_RS29310 +0.6 1.8 oxidoreductase compare
BPHYT_RS27570 +0.6 0.8 universal stress protein UspA compare
BPHYT_RS07870 +0.6 2.1 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare


Specific Phenotypes

For 6 genes in this experiment

For nitrogen source D-Alanine in Burkholderia phytofirmans PsJN

For nitrogen source D-Alanine across organisms