Experiment set3IT067 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Spectinomycin dihydrochloride pentahydrate 0.0125 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -6.8 -6.6 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_5178 -4.7 -3.2 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_4352 -4.6 -5.4 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_2753 -4.6 -5.4 HtrA protease/chaperone protein compare
Pf6N2E2_4353 -4.3 -7.1 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_4072 -4.1 -8.3 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_623 -3.9 -2.4 FIG00954674: hypothetical protein compare
Pf6N2E2_4362 -3.7 -5.1 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_2825 -3.7 -6.6 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_5430 -3.6 -12.2 Transglycosylase, Slt family compare
Pf6N2E2_3611 -3.5 -2.7 HflC protein compare
Pf6N2E2_4372 -3.4 -7.1 FIG00460773: hypothetical protein compare
Pf6N2E2_4599 -3.3 -4.0 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_1661 -3.3 -10.3 RND efflux system, inner membrane transporter CmeB conserved
Pf6N2E2_4162 -3.1 -5.2 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_3612 -3.0 -3.5 HflK protein compare
Pf6N2E2_5340 -3.0 -6.9 Stringent starvation protein A compare
Pf6N2E2_4272 -3.0 -6.0 putative membrane protein compare
Pf6N2E2_3770 -3.0 -3.5 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_1660 -2.9 -5.7 RND efflux system, membrane fusion protein CmeA compare
Pf6N2E2_463 -2.9 -8.4 Transcriptional regulatory protein RstA compare
Pf6N2E2_464 -2.5 -2.2 Sensory histidine kinase QseC compare
Pf6N2E2_3603 -2.5 -5.5 FIG003573: hypothetical protein compare
Pf6N2E2_621 -2.4 -6.9 TPR domain protein in aerotolerance operon compare
Pf6N2E2_5006 -2.3 -8.3 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_2824 -2.3 -9.9 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_620 -2.2 -9.1 BatD compare
Pf6N2E2_3351 -2.2 -4.8 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_2189 -2.1 -6.5 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_624 -2.1 -6.9 hypothetical protein PA3071 compare
Pf6N2E2_3826 -2.1 -7.1 Nitrogen regulation protein NR(I) compare
Pf6N2E2_5536 -2.1 -2.5 Holliday junction DNA helicase RuvA compare
Pf6N2E2_2823 -2.0 -3.9 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_3270 -1.9 -5.5 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_4369 -1.9 -3.1 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_625 -1.9 -4.5 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_2574 -1.9 -2.5 Flagellar synthesis regulator FleN compare
Pf6N2E2_622 -1.9 -7.3 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_2274 -1.8 -6.9 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_4187 -1.7 -5.2 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2605 -1.6 -6.1 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_3607 -1.6 -5.7 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_2218 -1.6 -5.4 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_1056 -1.5 -1.9 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_2277 -1.5 -3.0 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_3504 -1.5 -9.1 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_5406 -1.5 -2.7 FIG00958224: hypothetical protein compare
Pf6N2E2_865 -1.5 -3.9 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_3666 -1.5 -5.6 InaA protein compare
Pf6N2E2_4416 -1.5 -3.0 Tyrosine recombinase XerC compare
Pf6N2E2_144 -1.4 -12.4 Uncharacterized protein YtfM precursor compare
Pf6N2E2_3825 -1.4 -4.2 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_2217 -1.4 -5.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_5520 -1.4 -4.5 Sensory box histidine kinase compare
Pf6N2E2_178 -1.3 -1.6 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_649 -1.3 -2.3 General secretion pathway protein L compare
Pf6N2E2_145 -1.3 -6.1 putative exported protein compare
Pf6N2E2_601 -1.3 -5.8 GlpG protein (membrane protein of glp regulon) compare
Pf6N2E2_4414 -1.3 -3.8 FIG00953808: hypothetical protein compare
Pf6N2E2_2010 -1.3 -2.7 hypothetical protein compare
Pf6N2E2_5534 -1.3 -4.1 FIG000859: hypothetical protein YebC compare
Pf6N2E2_338 -1.3 -2.5 Transcriptional regulator, AraC family compare
Pf6N2E2_3062 -1.2 -4.1 Membrane-associated zinc metalloprotease compare
Pf6N2E2_2261 -1.2 -5.9 VacJ-like lipoprotein precursor compare
Pf6N2E2_4614 -1.2 -3.1 twitching motility protein PilH compare
Pf6N2E2_3460 -1.2 -1.2 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_75 -1.2 -2.5 Colicin V production protein compare
Pf6N2E2_3198 -1.2 -1.9 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_3656 -1.2 -4.0 Probable transcription regulator Mig-14 compare
Pf6N2E2_4615 -1.2 -1.4 type IV pili signal transduction protein PilI compare
Pf6N2E2_5771 -1.2 -5.9 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_302 -1.2 -5.4 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_1239 -1.1 -5.7 Putative TEGT family carrier/transport protein compare
Pf6N2E2_4120 -1.1 -7.5 Trk system potassium uptake protein TrkA compare
Pf6N2E2_2253 -1.1 -2.1 hypothetical protein compare
Pf6N2E2_4585 -1.1 -7.1 Cell division protein FtsX compare
Pf6N2E2_2073 -1.1 -5.4 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_3876 -1.1 -4.0 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_3505 -1.1 -1.6 Translation initiation factor SUI1-related protein compare
Pf6N2E2_2549 -1.0 -1.7 hypothetical protein compare
Pf6N2E2_3516 -1.0 -2.0 Probable transmembrane protein compare
Pf6N2E2_2634 -1.0 -6.5 Potassium uptake protein TrkH compare
Pf6N2E2_5723 -1.0 -6.0 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_5544 -1.0 -5.8 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_5001 -1.0 -2.2 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_1147 -1.0 -2.5 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_5605 -0.9 -3.2 FxsA protein compare
Pf6N2E2_5252 -0.9 -2.1 FIG00956396: hypothetical protein compare
Pf6N2E2_3908 -0.9 -4.3 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_1545 -0.9 -3.1 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_754 -0.9 -2.2 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf6N2E2_4584 -0.9 -2.3 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_4803 -0.9 -1.5 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_586 -0.9 -5.7 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) compare
Pf6N2E2_5242 -0.9 -1.6 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_5245 -0.9 -4.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1014 -0.9 -2.3 Nitrate/nitrite transporter compare
Pf6N2E2_2465 -0.9 -4.3 Cys regulon transcriptional activator CysB compare
Pf6N2E2_4204 -0.8 -1.4 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_1433 -0.8 -3.2 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_469 -0.8 -2.2 lipoprotein, putative compare
Pf6N2E2_2285 -0.8 -1.1 FIG00954079: hypothetical protein compare
Pf6N2E2_5555 -0.8 -1.2 Cold shock protein CspA compare
Pf6N2E2_1673 -0.8 -1.5 Transcriptional regulator, TetR family compare
Pf6N2E2_2694 -0.8 -4.4 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) compare
Pf6N2E2_3515 -0.8 -4.4 Probable transmembrane protein compare
Pf6N2E2_2586 -0.8 -1.6 Hpt domain protein compare
Pf6N2E2_447 -0.8 -3.6 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Pf6N2E2_3834 -0.8 -3.1 Lipoprotein NlpD compare
Pf6N2E2_4048 -0.8 -4.0 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_4273 -0.8 -3.9 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_2750 -0.8 -4.5 Putative permease PerM (= YfgO) compare
Pf6N2E2_288 -0.8 -1.4 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_3698 -0.8 -3.1 Nicotinamidase family protein YcaC compare
Pf6N2E2_1440 -0.8 -2.0 Putative tRNA-m1A22 methylase compare
Pf6N2E2_5261 -0.8 -1.1 FIG00956983: hypothetical protein compare
Pf6N2E2_3616 -0.8 -4.4 DNA mismatch repair protein MutL compare
Pf6N2E2_2074 -0.8 -1.7 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_2827 -0.8 -1.3 hypothetical protein compare
Pf6N2E2_1323 -0.8 -1.8 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_3641 -0.8 -2.2 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Pf6N2E2_2707 -0.8 -2.7 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_2708 -0.8 -3.1 Lactam utilization protein LamB compare
Pf6N2E2_5727 -0.7 -3.4 FIG00955360: hypothetical protein compare
Pf6N2E2_2788 -0.7 -1.0 Transcriptional regulator, AsnC family compare
Pf6N2E2_4843 -0.7 -4.0 FIG00956941: hypothetical protein compare
Pf6N2E2_734 -0.7 -2.2 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_4091 -0.7 -5.6 Oligopeptidase A (EC 3.4.24.70) compare
Pf6N2E2_5190 -0.7 -5.5 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_2018 -0.7 -1.1 hypothetical protein compare
Pf6N2E2_3493 -0.7 -3.4 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_3257 -0.7 -2.2 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_4279 -0.7 -5.1 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_5758 -0.7 -0.8 FIG00957314: hypothetical protein compare
Pf6N2E2_2541 -0.7 -3.8 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC compare
Pf6N2E2_2128 -0.7 -3.3 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_5733 -0.7 -2.6 NLP/P60 family protein compare
Pf6N2E2_5342 -0.7 -1.8 21 kDa hemolysin precursor compare
Pf6N2E2_4077 -0.7 -1.2 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_2384 -0.7 -2.8 CmpX compare
Pf6N2E2_2325 -0.7 -3.3 Recombination protein RecR compare
Pf6N2E2_43 -0.7 -2.7 Histidine permease YuiF compare
Pf6N2E2_2938 -0.7 -2.7 Outer membrane lipoprotein compare
Pf6N2E2_5961 -0.7 -4.4 Transcriptional regulator, TetR family compare
Pf6N2E2_1584 -0.7 -2.5 Transcriptional regulator, MarR family / Acetyltransferase (GNAT) compare
Pf6N2E2_3617 -0.7 -2.4 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_5428 -0.7 -3.7 DNA recombination and repair protein RecO compare
Pf6N2E2_4886 -0.7 -4.6 Catalase (EC 1.11.1.6) compare
Pf6N2E2_6164 -0.7 -0.9 tRNA-Val-TAC compare
Pf6N2E2_1705 -0.7 -1.4 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_5571 -0.7 -1.6 hypothetical protein compare
Pf6N2E2_4007 -0.7 -2.2 FIG00956018: hypothetical protein compare
Pf6N2E2_3568 -0.7 -1.6 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf6N2E2_156 -0.7 -1.9 Carbon storage regulator compare
Pf6N2E2_4146 -0.7 -1.6 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Pf6N2E2_3753 -0.6 -5.3 DamX, an inner membrane protein involved in bile resistance compare
Pf6N2E2_96 -0.6 -2.3 FIG011065: hypothetical protein compare
Pf6N2E2_5494 -0.6 -2.7 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_4254 -0.6 -2.9 HflK protein compare
Pf6N2E2_2501 -0.6 -1.7 hypothetical protein compare
Pf6N2E2_2503 -0.6 -1.7 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_5419 -0.6 -2.9 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf6N2E2_3328 -0.6 -1.1 transcriptional regulator compare
Pf6N2E2_248 -0.6 -4.4 hypothetical protein compare
Pf6N2E2_4075 -0.6 -2.3 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_5610 -0.6 -3.7 two-component system sensor protein compare
Pf6N2E2_4617 -0.6 -5.0 Signal transduction histidine kinase CheA (EC 2.7.3.-) compare
Pf6N2E2_2640 -0.6 -1.4 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_170 -0.6 -1.1 lipoprotein, putative compare
Pf6N2E2_5766 -0.6 -1.0 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_1652 -0.6 -1.7 Transcriptional regulator, TetR family compare
Pf6N2E2_1774 -0.6 -1.4 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_4394 -0.6 -3.8 Putrescine utilization regulator compare
Pf6N2E2_4155 -0.6 -4.6 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_6063 -0.6 -2.6 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_4607 -0.6 -1.4 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR compare
Pf6N2E2_5967 -0.6 -1.6 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf6N2E2_5677 -0.6 -1.1 Carbon storage regulator compare
Pf6N2E2_5785 -0.6 -1.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3260 -0.6 -2.2 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_2722 -0.6 -2.4 FIG00954807: hypothetical protein compare
Pf6N2E2_3687 -0.6 -2.3 FIG00959437: hypothetical protein compare
Pf6N2E2_94 -0.6 -2.5 Cyn operon transcriptional activator compare
Pf6N2E2_5633 -0.6 -4.5 Aromatic amino acid transport protein AroP compare
Pf6N2E2_5877 -0.6 -1.8 Phosphohistidine phosphatase SixA compare
Pf6N2E2_114 -0.6 -1.2 Polysaccharide biosynthesis protein compare
Pf6N2E2_5331 -0.6 -2.6 ATPase, AFG1 family compare
Pf6N2E2_2479 -0.6 -1.9 Transcription elongation factor GreB compare
Pf6N2E2_1501 -0.6 -1.2 Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) compare
Pf6N2E2_2606 -0.6 -2.7 hypothetical protein compare
Pf6N2E2_5345 -0.6 -3.9 LppC putative lipoprotein compare
Pf6N2E2_3655 -0.6 -4.2 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_4762 -0.5 -1.9 Biotin synthesis protein BioH compare
Pf6N2E2_4025 -0.5 -1.2 hypothetical protein compare
Pf6N2E2_4478 -0.5 -3.1 FIG019278: hypothetical protein compare
Pf6N2E2_1220 -0.5 -2.2 hypothetical protein compare
Pf6N2E2_4454 -0.5 -2.5 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_1739 -0.5 -2.7 Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) compare
Pf6N2E2_4197 -0.5 -3.6 DNA recombination and repair protein RecF compare
Pf6N2E2_4073 -0.5 -2.1 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare


Specific Phenotypes

For 2 genes in this experiment

For stress Spectinomycin dihydrochloride pentahydrate in Pseudomonas fluorescens FW300-N2E2

For stress Spectinomycin dihydrochloride pentahydrate across organisms